Wall clock time and date at job start Sun Mar 29 2020 22:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21303 * 120.00084 * 2 1 4 4 C 1.46758 * 119.99658 * 179.97438 * 2 1 3 5 5 N 1.32138 * 126.52036 * 0.02745 * 4 2 1 6 6 N 1.28429 * 110.23485 * 179.97438 * 5 4 2 7 7 C 1.46506 * 124.84906 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47289 * 265.02319 * 7 6 5 9 9 C 1.52999 * 109.46684 * 145.02246 * 7 6 5 10 10 C 1.35734 * 110.30117 * 0.26197 * 6 5 4 11 11 C 1.35978 * 107.11607 * 359.57622 * 10 6 5 12 12 O 1.35841 * 127.30899 * 180.15231 * 11 10 6 13 13 C 1.34776 * 116.99861 * 0.30099 * 12 11 10 14 14 H 1.07998 * 120.00291 * 0.02562 * 13 12 11 15 15 C 1.38664 * 119.99841 * 180.02562 * 13 12 11 16 16 N 1.31557 * 119.99780 * 180.02562 * 15 13 12 17 17 Si 1.86796 * 119.99927 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47262 * 89.99778 * 17 15 13 19 19 H 1.48501 * 109.46814 * 209.99508 * 17 15 13 20 20 H 1.48502 * 109.47104 * 329.99961 * 17 15 13 21 21 H 1.09001 * 109.47258 * 270.00562 * 1 2 3 22 22 H 1.09003 * 109.46879 * 30.00270 * 1 2 3 23 23 H 1.08996 * 109.47130 * 150.00194 * 1 2 3 24 24 H 1.08996 * 109.46660 * 25.03034 * 7 6 5 25 25 H 1.09002 * 109.47153 * 179.97438 * 8 7 6 26 26 H 1.09001 * 109.46832 * 60.00146 * 8 7 6 27 27 H 1.09004 * 109.47261 * 300.00128 * 8 7 6 28 28 H 1.09002 * 109.46716 * 180.02562 * 9 7 6 29 29 H 1.09000 * 109.47486 * 300.00065 * 9 7 6 30 30 H 1.09001 * 109.47362 * 60.00788 * 9 7 6 31 31 H 1.08003 * 126.44129 * 179.73306 * 10 6 5 32 32 H 0.97004 * 120.00105 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1136 1.0505 0.0000 4 6 2.2408 -1.2710 0.0006 5 7 1.7142 -2.4830 0.0006 6 7 2.6425 -3.3705 0.0006 7 6 2.4166 -4.8181 0.0012 8 6 2.4620 -5.3408 1.4384 9 6 3.5056 -5.5044 -0.8258 10 6 3.8626 -2.7759 0.0064 11 6 3.6531 -1.4324 0.0006 12 8 4.5938 -0.4524 0.0004 13 6 5.8838 -0.8426 0.0005 14 1 6.1300 -1.8942 0.0002 15 6 6.8951 0.1061 0.0008 16 7 8.1543 -0.2747 0.0004 17 14 6.4694 1.9249 0.0020 18 1 6.3568 2.4061 1.4024 19 1 7.5372 2.6836 -0.6977 20 1 5.1758 2.1310 -0.6977 21 1 -0.3634 0.0001 1.0277 22 1 -0.3633 0.8900 -0.5139 23 1 -0.3633 -0.8900 -0.5138 24 1 1.4404 -5.0336 -0.4332 25 1 2.2935 -6.4177 1.4388 26 1 1.6862 -4.8518 2.0275 27 1 3.4383 -5.1252 1.8728 28 1 3.3373 -6.5813 -0.8258 29 1 3.4732 -5.1320 -1.8497 30 1 4.4818 -5.2889 -0.3914 31 1 4.8199 -3.2759 0.0119 32 1 8.8618 0.3889 0.0010 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307396711.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:30 Heat of formation + Delta-G solvation = 11.634751 kcal Electronic energy + Delta-G solvation = -17001.130576 eV Core-core repulsion = 14157.892222 eV Total energy + Delta-G solvation = -2843.238353 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.91198 -38.34240 -37.35520 -35.40016 -32.22799 -30.75196 -29.31966 -28.70725 -27.33560 -25.19517 -23.59789 -21.30333 -19.94039 -19.06084 -17.50506 -17.12856 -15.70031 -15.50232 -15.21621 -14.51763 -14.30786 -14.11208 -13.76859 -13.34929 -13.24175 -12.59033 -12.45803 -12.36695 -12.29044 -11.97707 -11.71963 -11.58221 -11.37447 -11.18982 -10.74750 -10.37578 -10.09972 -9.59958 -9.21927 -8.78776 -8.54592 -7.40203 -6.29542 -3.96055 1.82115 2.85574 2.89988 3.37326 3.41715 3.66060 3.84976 4.42048 4.45265 4.60598 4.81198 4.95195 5.04388 5.17108 5.35642 5.39868 5.46546 5.56484 5.62255 5.72932 5.76316 5.85193 6.00396 6.04368 6.09618 6.26739 6.61318 6.96727 7.40551 7.76044 8.09779 8.13564 8.58415 9.07500 9.72662 10.78820 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.020180 B = 0.009459 C = 0.006698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.177754 B = 2959.371133 C = 4179.430468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.434 3.566 3 O -0.453 6.453 4 C -0.100 4.100 5 N -0.242 5.242 6 N -0.259 5.259 7 C 0.150 3.850 8 C -0.165 4.165 9 C -0.164 4.164 10 C -0.143 4.143 11 C 0.102 3.898 12 O -0.189 6.189 13 C -0.384 4.384 14 H 0.095 0.905 15 C 0.064 3.936 16 N -0.887 5.887 17 Si 0.899 3.101 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.250 1.250 21 H 0.089 0.911 22 H 0.079 0.921 23 H 0.085 0.915 24 H 0.103 0.897 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.176 0.824 32 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.542 -9.820 0.192 15.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.310 3.690 3 O -0.324 6.324 4 C -0.254 4.254 5 N -0.085 5.085 6 N -0.055 5.055 7 C 0.049 3.951 8 C -0.223 4.223 9 C -0.222 4.222 10 C -0.284 4.284 11 C 0.044 3.956 12 O -0.092 6.092 13 C -0.460 4.460 14 H 0.112 0.888 15 C -0.138 4.138 16 N -0.526 5.526 17 Si 0.724 3.276 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.174 1.174 21 H 0.108 0.892 22 H 0.098 0.902 23 H 0.103 0.897 24 H 0.121 0.879 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.193 0.807 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.993 -9.521 0.179 16.109 hybrid contribution 0.959 0.772 0.065 1.233 sum -12.034 -8.749 0.244 14.880 Atomic orbital electron populations 1.22078 0.93905 1.04122 1.04051 1.21089 0.90583 0.85587 0.71731 1.90605 1.72118 1.32836 1.36851 1.21795 0.90667 0.93064 1.19870 1.73298 1.19361 0.96890 1.18907 1.45048 1.03574 1.05887 1.51029 1.21401 1.01396 0.74416 0.97933 1.22226 1.03722 1.01450 0.94888 1.22166 0.98845 1.00611 1.00573 1.22240 0.90493 0.93001 1.22646 1.19046 0.89199 0.87726 0.99635 1.83670 1.14728 1.28286 1.82520 1.20589 0.77647 0.95371 1.52391 0.88756 1.24351 0.93702 1.00026 0.95750 1.69652 0.98436 1.35307 1.49242 0.86239 0.79232 0.82907 0.79220 1.20013 1.21076 1.17362 0.89222 0.90203 0.89657 0.87890 0.90537 0.91614 0.91361 0.90242 0.91325 0.90894 0.80731 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.58 10.15 36.01 0.37 -2.21 16 2 C 0.43 8.78 7.24 -30.86 -0.22 8.56 16 3 O -0.45 -11.01 17.28 3.26 0.06 -10.95 16 4 C -0.10 -2.15 7.05 -82.79 -0.58 -2.73 16 5 N -0.24 -4.49 11.66 33.39 0.39 -4.10 16 6 N -0.26 -4.45 3.23 -54.49 -0.18 -4.62 16 7 C 0.15 1.76 3.80 -67.93 -0.26 1.50 16 8 C -0.16 -1.67 9.52 37.16 0.35 -1.32 16 9 C -0.16 -1.68 8.81 37.16 0.33 -1.35 16 10 C -0.14 -2.96 9.65 -16.64 -0.16 -3.12 16 11 C 0.10 2.51 7.01 -38.89 -0.27 2.24 16 12 O -0.19 -5.40 8.20 -2.36 -0.02 -5.42 16 13 C -0.38 -11.28 10.10 30.89 0.31 -10.97 16 14 H 0.09 2.76 6.29 -52.49 -0.33 2.43 16 15 C 0.06 1.89 5.49 -17.51 -0.10 1.79 16 16 N -0.89 -26.50 13.96 55.48 0.77 -25.72 16 17 Si 0.90 23.61 28.62 -169.99 -4.86 18.75 16 18 H -0.27 -7.13 7.11 56.52 0.40 -6.72 16 19 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.25 -6.89 7.11 56.52 0.40 -6.49 16 21 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 22 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.08 1.08 7.93 -51.93 -0.41 0.66 16 24 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.82 7.06 -51.93 -0.37 0.46 16 31 H 0.18 3.49 5.97 -52.48 -0.31 3.18 16 32 H 0.28 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 283.79 15.07 4.28 4.28 Total: -1.00 -34.37 283.79 -3.74 -38.11 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: -3.94 Total: -2.71 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -0.24 Total: -7.61 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.99 Total: -34.44 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: 0.04 Total: -16.37 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -4.86 Total: 18.75 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -34.37 -3.74 -38.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307396711.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.740 kcal (2) G-P(sol) polarization free energy of solvation -34.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds