Wall clock time and date at job start Sun Mar 29 2020 22:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 C 1.52995 * 109.47164 * 124.99894 * 3 2 1 5 5 H 1.09005 * 110.53644 * 305.70490 * 4 3 2 6 6 N 1.47314 * 110.59811 * 68.53280 * 4 3 2 7 7 C 1.34870 * 106.43823 * 118.47820 * 6 4 3 8 8 O 1.21540 * 123.73096 * 180.02562 * 7 6 4 9 9 N 1.33800 * 112.49785 * 0.13858 * 7 6 4 10 10 C 1.46497 * 124.17464 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47384 * 269.95924 * 10 9 7 12 12 C 1.50703 * 109.47280 * 180.02562 * 11 10 9 13 13 H 1.07994 * 120.00031 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99892 * 179.97438 * 12 11 10 15 15 N 1.31520 * 120.00232 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00068 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46981 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46591 * 120.00282 * 16 14 12 19 19 H 1.48499 * 109.47421 * 239.99996 * 16 14 12 20 20 C 1.34759 * 111.64496 * 359.91022 * 9 7 6 21 21 O 1.21236 * 127.15564 * 179.97438 * 20 9 7 22 22 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 23 23 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 24 24 H 1.08002 * 120.00350 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47600 * 245.00508 * 3 2 1 26 26 H 1.09004 * 109.46937 * 5.00335 * 3 2 1 27 27 H 0.96994 * 126.68961 * 298.48329 * 6 4 3 28 28 H 1.09009 * 109.47371 * 29.95936 * 10 9 7 29 29 H 1.09004 * 109.46946 * 149.95539 * 10 9 7 30 30 H 1.09009 * 109.46876 * 300.00315 * 11 10 9 31 31 H 1.09004 * 109.47393 * 59.99889 * 11 10 9 32 32 H 0.96999 * 120.00303 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 1 2.5076 1.1362 2.1150 6 7 4.1201 0.3566 0.9836 7 6 5.2677 1.0640 0.9448 8 8 6.3645 0.5631 0.7918 9 7 5.0646 2.3779 1.0957 10 6 6.1323 3.3810 1.0946 11 6 6.6392 3.5879 2.5233 12 6 7.7370 4.6203 2.5223 13 1 8.0429 5.0824 1.5953 14 6 8.3509 4.9750 3.7048 15 7 7.9787 4.4120 4.8336 16 14 9.7122 6.2542 3.7034 17 1 9.9417 6.7313 2.3161 18 1 9.3156 7.3998 4.5612 19 1 10.9608 5.6489 4.2322 20 6 3.7566 2.6645 1.2474 21 8 3.2603 3.7594 1.4043 22 1 -0.5401 0.9353 -0.0004 23 1 -0.5400 -0.9354 -0.0045 24 1 1.8500 -0.9353 -0.0004 25 1 2.6212 1.4027 -0.9314 26 1 1.3585 2.1317 0.0896 27 1 4.0260 -0.6050 0.8982 28 1 6.9527 3.0380 0.4641 29 1 5.7452 4.3232 0.7064 30 1 5.8188 3.9310 3.1538 31 1 7.0263 2.6458 2.9115 32 1 8.4104 4.6617 5.6656 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321236948.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:52 Heat of formation + Delta-G solvation = -34.303297 kcal Electronic energy + Delta-G solvation = -16696.399451 eV Core-core repulsion = 13851.169074 eV Total energy + Delta-G solvation = -2845.230377 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.06790 -38.23013 -36.60859 -35.37146 -34.22119 -32.81175 -29.91497 -29.36414 -25.64037 -24.39520 -22.41783 -21.59370 -20.35455 -19.46655 -17.80685 -17.01257 -16.33590 -16.10866 -15.30780 -15.27743 -14.81960 -14.43429 -14.11123 -13.83395 -13.46285 -13.02657 -12.94111 -12.33761 -12.00102 -11.56647 -11.48848 -10.97547 -10.85124 -10.50843 -10.15562 -10.09043 -9.92239 -9.69409 -9.32515 -9.22988 -8.88366 -8.39016 -6.03569 -4.07361 1.81007 2.02415 2.59555 3.31837 3.32076 3.39145 3.39316 3.43732 4.10712 4.45184 4.53148 4.72816 4.81992 4.93772 5.33205 5.38869 5.46805 5.59880 5.67054 6.03505 6.13817 6.28390 6.31497 6.41223 6.65709 6.92444 7.37711 7.58003 7.69957 7.72392 7.93491 8.28225 8.45621 8.98029 9.56813 11.08227 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.048252 B = 0.005236 C = 0.004996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.148131 B = 5346.213769 C = 5603.153211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.155 4.155 3 C -0.092 4.092 4 C 0.097 3.903 5 H 0.124 0.876 6 N -0.732 5.732 7 C 0.700 3.300 8 O -0.538 6.538 9 N -0.567 5.567 10 C 0.119 3.881 11 C 0.011 3.989 12 C -0.521 4.521 13 H 0.060 0.940 14 C 0.059 3.941 15 N -0.892 5.892 16 Si 0.898 3.102 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.522 3.478 21 O -0.468 6.468 22 H 0.099 0.901 23 H 0.099 0.901 24 H 0.111 0.889 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.434 0.566 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.021 0.979 31 H 0.024 0.976 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.040 -8.925 -8.985 18.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.173 4.173 3 C -0.130 4.130 4 C -0.012 4.012 5 H 0.142 0.858 6 N -0.397 5.397 7 C 0.401 3.599 8 O -0.411 6.411 9 N -0.312 5.312 10 C 0.000 4.000 11 C -0.027 4.027 12 C -0.560 4.560 13 H 0.078 0.922 14 C -0.143 4.143 15 N -0.531 5.531 16 Si 0.725 3.275 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 C 0.308 3.692 21 O -0.338 6.338 22 H 0.118 0.882 23 H 0.117 0.883 24 H 0.129 0.871 25 H 0.103 0.897 26 H 0.111 0.889 27 H 0.278 0.722 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.575 -8.472 -8.797 18.260 hybrid contribution 0.664 0.143 0.213 0.712 sum -12.910 -8.329 -8.584 17.599 Atomic orbital electron populations 1.23928 0.95832 1.02184 1.00141 1.22780 0.95983 0.97821 1.00746 1.20945 0.97658 0.97256 0.97158 1.22032 0.89994 0.87407 1.01807 0.85810 1.45617 1.05608 1.09416 1.79105 1.16037 0.84813 0.81528 0.77489 1.91000 1.23998 1.72296 1.53840 1.46709 1.10227 1.08790 1.65462 1.22214 0.86553 0.87935 1.03266 1.19425 0.96536 0.97882 0.88822 1.21037 1.18611 1.22497 0.93849 0.92150 1.25001 0.97219 0.96555 0.95477 1.69985 1.42120 1.42673 0.98310 0.86443 0.81652 0.81171 0.78187 1.19578 1.20943 1.20925 1.20692 0.82860 0.90372 0.75244 1.90790 1.72061 1.25625 1.45287 0.88231 0.88270 0.87146 0.89745 0.88857 0.72180 0.89671 0.89855 0.96030 0.95748 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.20 14.32 29.02 0.42 -0.78 16 2 C -0.16 -1.10 9.37 -36.02 -0.34 -1.44 16 3 C -0.09 -0.81 5.41 -27.88 -0.15 -0.96 16 4 C 0.10 1.10 3.64 -68.21 -0.25 0.85 16 5 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 6 N -0.73 -8.79 6.11 -59.09 -0.36 -9.16 16 7 C 0.70 12.33 8.63 -87.70 -0.76 11.57 16 8 O -0.54 -11.48 17.48 5.33 0.09 -11.39 16 9 N -0.57 -10.59 2.60 -120.63 -0.31 -10.90 16 10 C 0.12 2.58 5.64 -4.04 -0.02 2.55 16 11 C 0.01 0.30 5.30 -27.88 -0.15 0.15 16 12 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 13 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -27.25 13.29 55.43 0.74 -26.51 16 16 Si 0.90 21.87 29.54 -169.99 -5.02 16.84 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 C 0.52 8.64 7.65 -10.56 -0.08 8.55 16 21 O -0.47 -8.97 17.76 5.60 0.10 -8.87 16 22 H 0.10 0.62 7.84 -52.49 -0.41 0.21 16 23 H 0.10 0.53 8.06 -52.48 -0.42 0.11 16 24 H 0.11 0.67 7.97 -52.49 -0.42 0.25 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.09 0.80 7.79 -51.93 -0.40 0.40 16 27 H 0.43 3.89 8.88 -40.82 -0.36 3.53 16 28 H 0.08 1.82 7.86 -51.92 -0.41 1.41 16 29 H 0.08 1.73 8.00 -51.93 -0.42 1.31 16 30 H 0.02 0.62 8.14 -51.92 -0.42 0.19 16 31 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 287.65 15.07 4.33 4.33 Total: -1.00 -34.16 287.65 -6.25 -40.41 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -4.08 Total: -1.66 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -1.74 Total: 6.89 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: 0.06 Total: -46.57 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: 0.19 Total: -20.26 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -34.16 -6.25 -40.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321236948.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.108 kcal (2) G-P(sol) polarization free energy of solvation -34.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds