Wall clock time and date at job start Sun Mar 29 2020 22:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 C 1.52995 * 109.47164 * 124.99894 * 3 2 1 5 5 H 1.09005 * 110.53644 * 305.70490 * 4 3 2 6 6 N 1.47314 * 110.59811 * 68.53280 * 4 3 2 7 7 C 1.34870 * 106.43823 * 118.47820 * 6 4 3 8 8 O 1.21540 * 123.73096 * 180.02562 * 7 6 4 9 9 N 1.33800 * 112.49785 * 0.13858 * 7 6 4 10 10 C 1.46497 * 124.17464 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47384 * 269.95924 * 10 9 7 12 12 C 1.50703 * 109.47280 * 180.02562 * 11 10 9 13 13 H 1.07994 * 120.00031 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99892 * 179.97438 * 12 11 10 15 15 N 1.31520 * 120.00232 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00068 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46981 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46591 * 120.00282 * 16 14 12 19 19 H 1.48499 * 109.47421 * 239.99996 * 16 14 12 20 20 C 1.34759 * 111.64496 * 359.91022 * 9 7 6 21 21 O 1.21236 * 127.15564 * 179.97438 * 20 9 7 22 22 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 23 23 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 24 24 H 1.08002 * 120.00350 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47600 * 245.00508 * 3 2 1 26 26 H 1.09004 * 109.46937 * 5.00335 * 3 2 1 27 27 H 0.96994 * 126.68961 * 298.48329 * 6 4 3 28 28 H 1.09009 * 109.47371 * 29.95936 * 10 9 7 29 29 H 1.09004 * 109.46946 * 149.95539 * 10 9 7 30 30 H 1.09009 * 109.46876 * 300.00315 * 11 10 9 31 31 H 1.09004 * 109.47393 * 59.99889 * 11 10 9 32 32 H 0.96999 * 120.00303 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 1 2.5076 1.1362 2.1150 6 7 4.1201 0.3566 0.9836 7 6 5.2677 1.0640 0.9448 8 8 6.3645 0.5631 0.7918 9 7 5.0646 2.3779 1.0957 10 6 6.1323 3.3810 1.0946 11 6 6.6392 3.5879 2.5233 12 6 7.7370 4.6203 2.5223 13 1 8.0429 5.0824 1.5953 14 6 8.3509 4.9750 3.7048 15 7 7.9787 4.4120 4.8336 16 14 9.7122 6.2542 3.7034 17 1 9.9417 6.7313 2.3161 18 1 9.3156 7.3998 4.5612 19 1 10.9608 5.6489 4.2322 20 6 3.7566 2.6645 1.2474 21 8 3.2603 3.7594 1.4043 22 1 -0.5401 0.9353 -0.0004 23 1 -0.5400 -0.9354 -0.0045 24 1 1.8500 -0.9353 -0.0004 25 1 2.6212 1.4027 -0.9314 26 1 1.3585 2.1317 0.0896 27 1 4.0260 -0.6050 0.8982 28 1 6.9527 3.0380 0.4641 29 1 5.7452 4.3232 0.7064 30 1 5.8188 3.9310 3.1538 31 1 7.0263 2.6458 2.9115 32 1 8.4104 4.6617 5.6656 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321236948.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:51 Heat of formation + Delta-G solvation = -58.954276 kcal Electronic energy + Delta-G solvation = -16697.468397 eV Core-core repulsion = 13851.169074 eV Total energy + Delta-G solvation = -2846.299323 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.41247 -39.66873 -37.74369 -36.91905 -35.51765 -34.54259 -31.82817 -30.25652 -27.45171 -25.65169 -24.04010 -23.12670 -21.48693 -20.40387 -19.19550 -18.62775 -18.03046 -17.44925 -16.57603 -16.52556 -16.30012 -16.11288 -15.27536 -15.22552 -14.92603 -14.44545 -14.17063 -13.93022 -13.53500 -12.91071 -12.77558 -12.72260 -12.21194 -12.11157 -12.05379 -11.88360 -11.41610 -11.16550 -10.77485 -10.63239 -10.52143 -10.14890 -8.26219 -6.39306 0.55882 1.21092 1.40729 1.41524 1.44907 1.55428 1.96808 2.20842 2.39713 2.93321 3.08263 3.65853 3.91940 4.08953 4.13181 4.34349 4.41122 4.47620 4.59179 4.71380 4.72716 4.96190 5.13869 5.34653 5.41166 5.70943 5.78751 5.82751 5.89532 6.06689 6.12291 6.38355 6.75129 7.11866 7.30755 8.86964 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.048252 B = 0.005236 C = 0.004996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.148131 B = 5346.213769 C = 5603.153211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.164 4.164 3 C -0.083 4.083 4 C 0.113 3.887 5 H 0.153 0.847 6 N -0.700 5.700 7 C 0.696 3.304 8 O -0.582 6.582 9 N -0.580 5.580 10 C 0.134 3.866 11 C 0.023 3.977 12 C -0.545 4.545 13 H 0.071 0.929 14 C 0.000 4.000 15 N -0.933 5.933 16 Si 0.975 3.025 17 H -0.257 1.257 18 H -0.276 1.276 19 H -0.278 1.278 20 C 0.514 3.486 21 O -0.498 6.498 22 H 0.101 0.899 23 H 0.113 0.887 24 H 0.124 0.876 25 H 0.082 0.918 26 H 0.098 0.902 27 H 0.453 0.547 28 H 0.086 0.914 29 H 0.091 0.909 30 H -0.008 1.008 31 H -0.011 1.011 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.051 -9.292 -9.855 20.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.182 4.182 3 C -0.122 4.122 4 C 0.005 3.995 5 H 0.171 0.829 6 N -0.367 5.367 7 C 0.397 3.603 8 O -0.459 6.459 9 N -0.324 5.324 10 C 0.013 3.987 11 C -0.015 4.015 12 C -0.583 4.583 13 H 0.090 0.910 14 C -0.198 4.198 15 N -0.573 5.573 16 Si 0.798 3.202 17 H -0.181 1.181 18 H -0.202 1.202 19 H -0.203 1.203 20 C 0.303 3.697 21 O -0.370 6.370 22 H 0.119 0.881 23 H 0.131 0.869 24 H 0.142 0.858 25 H 0.100 0.900 26 H 0.116 0.884 27 H 0.301 0.699 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.010 0.990 31 H 0.008 0.992 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.654 -8.886 -9.685 19.685 hybrid contribution 0.874 0.231 0.498 1.032 sum -13.780 -8.655 -9.187 18.687 Atomic orbital electron populations 1.24121 0.95735 1.03020 0.98457 1.22736 0.96151 0.97193 1.02148 1.20914 0.96997 0.98774 0.95483 1.22179 0.89276 0.83481 1.04556 0.82947 1.45450 1.03917 1.10225 1.77074 1.16174 0.85481 0.81300 0.77368 1.90969 1.25986 1.72856 1.56048 1.46692 1.10625 1.09024 1.66083 1.21729 0.87791 0.89430 0.99727 1.19197 0.95277 0.95694 0.91353 1.21508 1.19227 1.23007 0.94567 0.91040 1.26050 0.99953 0.98858 0.94929 1.70122 1.43670 1.44342 0.99147 0.85252 0.77930 0.78048 0.78923 1.18063 1.20189 1.20335 1.21568 0.82285 0.91950 0.73889 1.90767 1.72341 1.27414 1.46478 0.88073 0.86875 0.85774 0.89982 0.88396 0.69936 0.89585 0.89060 0.99014 0.99243 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 14.32 67.79 0.97 -0.73 16 2 C -0.16 -1.77 9.37 25.65 0.24 -1.53 16 3 C -0.08 -1.25 5.41 29.85 0.16 -1.08 16 4 C 0.11 2.32 3.64 44.37 0.16 2.48 16 5 H 0.15 2.45 8.14 -2.38 -0.02 2.43 16 6 N -0.70 -15.51 6.11 -459.10 -2.80 -18.32 16 7 C 0.70 24.39 8.63 179.33 1.55 25.94 16 8 O -0.58 -25.22 17.48 -3.84 -0.07 -25.28 16 9 N -0.58 -21.89 2.60 -772.79 -2.01 -23.90 16 10 C 0.13 5.95 5.64 86.38 0.49 6.43 16 11 C 0.02 1.27 5.30 29.85 0.16 1.42 16 12 C -0.54 -31.79 9.11 25.60 0.23 -31.56 16 13 H 0.07 3.91 7.74 -2.91 -0.02 3.89 16 14 C 0.00 0.02 5.46 84.65 0.46 0.48 16 15 N -0.93 -58.31 13.29 21.45 0.28 -58.02 16 16 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 17 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 18 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 20 C 0.51 16.80 7.65 87.94 0.67 17.47 16 21 O -0.50 -19.15 17.76 -2.89 -0.05 -19.20 16 22 H 0.10 0.95 7.84 -2.91 -0.02 0.92 16 23 H 0.11 0.81 8.06 -2.91 -0.02 0.78 16 24 H 0.12 1.01 7.97 -2.91 -0.02 0.99 16 25 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.10 1.44 7.79 -2.38 -0.02 1.42 16 27 H 0.45 6.87 8.88 -92.71 -0.82 6.05 16 28 H 0.09 3.77 7.86 -2.38 -0.02 3.75 16 29 H 0.09 3.86 8.00 -2.38 -0.02 3.84 16 30 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 31 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 32 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -76.28 287.65 2.77 -73.51 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: 0.30 Total: 4.90 kcal Atomic # 6 Polarization: 14.22 SS G_CDS: 5.09 Total: 19.32 kcal Atomic # 7 Polarization: -95.71 SS G_CDS: -4.53 Total: -100.24 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -0.12 Total: -44.49 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -76.28 2.77 -73.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321236948.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.554 kcal (2) G-P(sol) polarization free energy of solvation -76.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds