Wall clock time and date at job start Sun Mar 29 2020 22:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47048 * 267.07362 * 3 2 1 5 5 C 1.37094 * 119.99791 * 264.23087 * 4 3 2 6 6 H 1.08000 * 120.00271 * 197.72022 * 5 4 3 7 7 C 1.38950 * 120.00317 * 17.72765 * 5 4 3 8 8 N 1.31409 * 119.99771 * 21.39409 * 7 5 4 9 9 Si 1.86803 * 120.00141 * 201.40062 * 7 5 4 10 10 H 1.48503 * 109.47183 * 89.99871 * 9 7 5 11 11 H 1.48498 * 109.47018 * 209.99604 * 9 7 5 12 12 H 1.48496 * 109.46981 * 329.99682 * 9 7 5 13 13 C 1.34773 * 120.00380 * 84.23059 * 4 3 2 14 14 O 1.21288 * 120.00178 * 179.97438 * 13 4 3 15 15 C 1.50703 * 119.99660 * 0.02562 * 13 4 3 16 16 C 1.53008 * 109.47055 * 180.02562 * 15 13 4 17 17 H 1.09000 * 110.79884 * 302.82044 * 16 15 13 18 18 C 1.54805 * 110.90642 * 179.15996 * 16 15 13 19 19 C 1.54098 * 104.18559 * 220.91807 * 18 16 15 20 20 O 1.43748 * 107.29362 * 357.97282 * 19 18 16 21 21 C 1.44379 * 106.97602 * 26.51227 * 20 19 18 22 22 H 1.08997 * 109.46985 * 147.07299 * 3 2 1 23 23 H 1.09004 * 109.47330 * 27.07054 * 3 2 1 24 24 H 0.97008 * 120.00105 * 180.02562 * 8 7 5 25 25 H 1.08997 * 109.47436 * 59.99975 * 15 13 4 26 26 H 1.08997 * 109.46901 * 299.99589 * 15 13 4 27 27 H 1.09001 * 110.48763 * 339.59157 * 18 16 15 28 28 H 1.09000 * 110.49235 * 102.11057 * 18 16 15 29 29 H 1.09008 * 109.87850 * 117.39298 * 19 18 16 30 30 H 1.08996 * 109.87972 * 238.54460 * 19 18 16 31 31 H 1.08994 * 110.61466 * 201.44282 * 21 20 19 32 32 H 1.08994 * 110.61736 * 78.44463 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0963 0.0714 1.3794 5 6 3.4368 1.2822 1.9248 6 1 4.0531 1.3214 2.8108 7 6 2.9888 2.4593 1.3377 8 7 1.9355 2.4422 0.5522 9 14 3.8840 4.0658 1.6649 10 1 4.9486 4.2555 0.6471 11 1 2.9207 5.1935 1.5896 12 1 4.4944 4.0257 3.0181 13 6 3.2108 -1.0538 2.1123 14 8 3.6155 -0.9953 3.2542 15 6 2.8371 -2.3849 1.5126 16 6 3.0581 -3.4905 2.5471 17 1 4.0910 -3.4939 2.8953 18 6 2.6638 -4.8724 1.9715 19 6 1.9384 -5.5736 3.1363 20 8 1.9766 -4.6812 4.2626 21 6 2.0742 -3.3407 3.7353 22 1 2.9709 0.8634 -0.5586 23 1 2.9718 -0.9143 -0.4677 24 1 1.6229 3.2639 0.1420 25 1 3.4580 -2.5764 0.6375 26 1 1.7880 -2.3686 1.2173 27 1 1.9932 -4.7540 1.1205 28 1 3.5527 -5.4323 1.6807 29 1 0.9038 -5.7772 2.8598 30 1 2.4482 -6.5047 3.3836 31 1 2.4790 -2.6617 4.4856 32 1 1.1015 -2.9936 3.3869 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322014125.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:27 Heat of formation + Delta-G solvation = -49.100677 kcal Electronic energy + Delta-G solvation = -17123.929121 eV Core-core repulsion = 14278.057081 eV Total energy + Delta-G solvation = -2845.872039 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.56916 -38.40181 -35.84519 -34.42471 -33.09864 -31.84820 -29.64107 -27.56540 -26.84769 -24.41841 -22.43883 -20.59800 -19.01452 -17.95910 -16.76229 -16.31338 -15.97063 -15.40546 -15.02891 -14.61582 -14.16579 -13.99934 -13.22431 -13.03647 -12.92855 -12.46185 -11.99936 -11.83176 -11.55811 -11.42050 -11.34844 -11.15566 -11.02421 -10.65957 -10.56280 -10.41224 -10.38646 -10.26607 -9.43932 -9.29140 -8.59801 -8.07924 -6.53643 -4.03013 3.07975 3.20650 3.24672 3.51377 3.75511 3.93853 4.08116 4.19740 4.62104 4.81955 4.89676 4.99548 5.11983 5.20621 5.30232 5.44288 5.58676 5.77479 5.83355 5.84837 5.92701 5.96396 6.08173 6.19715 6.41203 6.47653 6.54153 7.10360 7.44500 7.87233 8.24972 8.69585 8.97396 9.16745 9.70534 10.52556 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.034781 B = 0.006979 C = 0.006267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.837319 B = 4010.799337 C = 4466.646978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.245 3.755 3 C 0.221 3.779 4 N -0.444 5.444 5 C -0.314 4.314 6 H 0.109 0.891 7 C 0.031 3.969 8 N -0.878 5.878 9 Si 0.927 3.073 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.454 3.546 14 O -0.571 6.571 15 C -0.128 4.128 16 C -0.097 4.097 17 H 0.092 0.908 18 C -0.155 4.155 19 C 0.047 3.953 20 O -0.385 6.385 21 C 0.056 3.944 22 H 0.127 0.873 23 H 0.084 0.916 24 H 0.273 0.727 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.340 -9.600 -3.306 10.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.073 4.073 3 C 0.093 3.907 4 N -0.164 5.164 5 C -0.441 4.441 6 H 0.127 0.873 7 C -0.172 4.172 8 N -0.517 5.517 9 Si 0.754 3.246 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.193 1.193 13 C 0.243 3.757 14 O -0.454 6.454 15 C -0.169 4.169 16 C -0.116 4.116 17 H 0.110 0.890 18 C -0.193 4.193 19 C -0.030 4.030 20 O -0.304 6.304 21 C -0.020 4.020 22 H 0.145 0.855 23 H 0.102 0.898 24 H 0.084 0.916 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.126 0.874 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.755 -9.468 -2.612 9.977 hybrid contribution 0.571 1.126 -0.360 1.313 sum 2.326 -8.342 -2.972 9.156 Atomic orbital electron populations 1.80903 1.13610 1.12339 1.08416 1.29331 0.95387 0.90051 0.92534 1.18741 0.81591 1.03370 0.86968 1.43661 1.56603 1.06705 1.09468 1.19738 1.30013 0.80887 1.13490 0.87328 1.25280 0.94970 0.99774 0.97191 1.69859 1.19849 1.29514 1.32454 0.85895 0.79008 0.80499 0.79201 1.20146 1.21124 1.19328 1.20124 0.83840 0.85274 0.86451 1.90531 1.50175 1.86667 1.18009 1.21637 1.02543 0.93657 0.99033 1.22380 1.01541 0.92442 0.95278 0.89002 1.23039 1.01032 0.96514 0.98713 1.23090 0.99399 0.93971 0.86572 1.88849 1.95212 1.16974 1.29373 1.23698 0.97750 0.83793 0.96803 0.85518 0.89848 0.91619 0.89586 0.90200 0.90667 0.90572 0.92885 0.90385 0.87352 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.00 18.54 42.15 0.78 -10.22 16 2 C 0.25 5.26 12.95 -20.76 -0.27 5.00 16 3 C 0.22 4.21 4.91 -6.83 -0.03 4.17 16 4 N -0.44 -10.00 2.60 -117.93 -0.31 -10.31 16 5 C -0.31 -7.92 9.32 -14.93 -0.14 -8.06 16 6 H 0.11 2.90 7.39 -52.49 -0.39 2.52 16 7 C 0.03 0.76 4.87 -17.47 -0.09 0.68 16 8 N -0.88 -21.85 9.48 55.50 0.53 -21.32 16 9 Si 0.93 19.40 29.60 -169.99 -5.03 14.37 16 10 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 11 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 12 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 13 C 0.45 9.77 7.36 -10.99 -0.08 9.69 16 14 O -0.57 -14.12 14.23 5.55 0.08 -14.04 16 15 C -0.13 -2.07 3.71 -27.88 -0.10 -2.17 16 16 C -0.10 -1.50 2.71 -88.61 -0.24 -1.74 16 17 H 0.09 1.49 8.06 -51.93 -0.42 1.07 16 18 C -0.16 -1.85 6.60 -25.21 -0.17 -2.02 16 19 C 0.05 0.59 7.70 37.73 0.29 0.88 16 20 O -0.38 -6.41 11.52 -35.23 -0.41 -6.82 16 21 C 0.06 0.96 6.46 38.21 0.25 1.21 16 22 H 0.13 2.49 6.46 -51.93 -0.34 2.15 16 23 H 0.08 1.18 6.68 -51.93 -0.35 0.83 16 24 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 25 H 0.09 1.13 7.42 -51.93 -0.39 0.74 16 26 H 0.08 1.28 7.47 -51.93 -0.39 0.90 16 27 H 0.07 0.81 7.86 -51.93 -0.41 0.41 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.62 8.14 -51.92 -0.42 0.19 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.11 2.10 7.13 -51.93 -0.37 1.73 16 32 H 0.05 0.95 8.02 -51.93 -0.42 0.53 16 LS Contribution 273.09 15.07 4.12 4.12 Total: -1.00 -29.97 273.09 -4.68 -34.65 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -3.86 Total: 1.93 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -0.58 Total: 7.64 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 1.00 Total: -41.85 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.33 Total: -20.85 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.97 -4.68 -34.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322014125.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.451 kcal (2) G-P(sol) polarization free energy of solvation -29.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds