Wall clock time and date at job start Sun Mar 29 2020 22:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47048 * 267.07362 * 3 2 1 5 5 C 1.37094 * 119.99791 * 264.23087 * 4 3 2 6 6 H 1.08000 * 120.00271 * 197.72022 * 5 4 3 7 7 C 1.38950 * 120.00317 * 17.72765 * 5 4 3 8 8 N 1.31409 * 119.99771 * 21.39409 * 7 5 4 9 9 Si 1.86803 * 120.00141 * 201.40062 * 7 5 4 10 10 H 1.48503 * 109.47183 * 89.99871 * 9 7 5 11 11 H 1.48498 * 109.47018 * 209.99604 * 9 7 5 12 12 H 1.48496 * 109.46981 * 329.99682 * 9 7 5 13 13 C 1.34773 * 120.00380 * 84.23059 * 4 3 2 14 14 O 1.21288 * 120.00178 * 179.97438 * 13 4 3 15 15 C 1.50703 * 119.99660 * 0.02562 * 13 4 3 16 16 C 1.53008 * 109.47055 * 180.02562 * 15 13 4 17 17 H 1.09000 * 110.79884 * 302.82044 * 16 15 13 18 18 C 1.54805 * 110.90642 * 179.15996 * 16 15 13 19 19 C 1.54098 * 104.18559 * 220.91807 * 18 16 15 20 20 O 1.43748 * 107.29362 * 357.97282 * 19 18 16 21 21 C 1.44379 * 106.97602 * 26.51227 * 20 19 18 22 22 H 1.08997 * 109.46985 * 147.07299 * 3 2 1 23 23 H 1.09004 * 109.47330 * 27.07054 * 3 2 1 24 24 H 0.97008 * 120.00105 * 180.02562 * 8 7 5 25 25 H 1.08997 * 109.47436 * 59.99975 * 15 13 4 26 26 H 1.08997 * 109.46901 * 299.99589 * 15 13 4 27 27 H 1.09001 * 110.48763 * 339.59157 * 18 16 15 28 28 H 1.09000 * 110.49235 * 102.11057 * 18 16 15 29 29 H 1.09008 * 109.87850 * 117.39298 * 19 18 16 30 30 H 1.08996 * 109.87972 * 238.54460 * 19 18 16 31 31 H 1.08994 * 110.61466 * 201.44282 * 21 20 19 32 32 H 1.08994 * 110.61736 * 78.44463 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0963 0.0714 1.3794 5 6 3.4368 1.2822 1.9248 6 1 4.0531 1.3214 2.8108 7 6 2.9888 2.4593 1.3377 8 7 1.9355 2.4422 0.5522 9 14 3.8840 4.0658 1.6649 10 1 4.9486 4.2555 0.6471 11 1 2.9207 5.1935 1.5896 12 1 4.4944 4.0257 3.0181 13 6 3.2108 -1.0538 2.1123 14 8 3.6155 -0.9953 3.2542 15 6 2.8371 -2.3849 1.5126 16 6 3.0581 -3.4905 2.5471 17 1 4.0910 -3.4939 2.8953 18 6 2.6638 -4.8724 1.9715 19 6 1.9384 -5.5736 3.1363 20 8 1.9766 -4.6812 4.2626 21 6 2.0742 -3.3407 3.7353 22 1 2.9709 0.8634 -0.5586 23 1 2.9718 -0.9143 -0.4677 24 1 1.6229 3.2639 0.1420 25 1 3.4580 -2.5764 0.6375 26 1 1.7880 -2.3686 1.2173 27 1 1.9932 -4.7540 1.1205 28 1 3.5527 -5.4323 1.6807 29 1 0.9038 -5.7772 2.8598 30 1 2.4482 -6.5047 3.3836 31 1 2.4790 -2.6617 4.4856 32 1 1.1015 -2.9936 3.3869 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322014125.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:27 Heat of formation + Delta-G solvation = -68.897312 kcal Electronic energy + Delta-G solvation = -17124.787567 eV Core-core repulsion = 14278.057081 eV Total energy + Delta-G solvation = -2846.730486 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.00095 -39.84185 -37.57345 -36.18086 -34.44461 -33.63728 -30.76529 -29.19996 -28.29178 -26.12323 -23.59390 -21.86532 -20.53728 -19.72720 -18.28947 -17.89989 -17.37586 -16.66065 -16.42310 -16.19585 -15.78894 -15.40385 -14.69727 -14.52219 -14.48817 -13.88202 -13.63994 -13.44750 -13.18490 -12.97832 -12.71813 -12.51981 -12.30871 -12.24869 -12.10840 -12.08416 -11.75094 -11.47780 -11.09343 -10.62351 -10.33025 -9.89833 -8.39612 -5.94704 1.40365 1.48608 1.58226 1.84393 2.08886 2.27297 2.36696 2.96396 3.01579 3.20186 3.60745 3.67606 3.86690 3.97365 4.09811 4.26593 4.36902 4.55264 4.58711 4.64464 4.86107 4.88745 4.92611 4.96099 4.98525 5.19822 5.35277 5.50145 5.94024 6.06727 6.42333 7.02419 7.15248 7.39109 7.96470 8.64049 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.034781 B = 0.006979 C = 0.006267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.837319 B = 4010.799337 C = 4466.646978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.258 3.742 3 C 0.221 3.779 4 N -0.458 5.458 5 C -0.340 4.340 6 H 0.081 0.919 7 C 0.005 3.995 8 N -0.894 5.894 9 Si 0.984 3.016 10 H -0.259 1.259 11 H -0.288 1.288 12 H -0.279 1.279 13 C 0.447 3.553 14 O -0.613 6.613 15 C -0.117 4.117 16 C -0.096 4.096 17 H 0.080 0.920 18 C -0.142 4.142 19 C 0.036 3.964 20 O -0.407 6.407 21 C 0.055 3.945 22 H 0.122 0.878 23 H 0.143 0.857 24 H 0.273 0.727 25 H 0.130 0.870 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.933 -10.981 -5.165 12.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.191 5.191 2 C -0.060 4.060 3 C 0.094 3.906 4 N -0.179 5.179 5 C -0.467 4.467 6 H 0.099 0.901 7 C -0.197 4.197 8 N -0.533 5.533 9 Si 0.809 3.191 10 H -0.183 1.183 11 H -0.214 1.214 12 H -0.204 1.204 13 C 0.238 3.762 14 O -0.498 6.498 15 C -0.157 4.157 16 C -0.116 4.116 17 H 0.099 0.901 18 C -0.179 4.179 19 C -0.041 4.041 20 O -0.327 6.327 21 C -0.021 4.021 22 H 0.140 0.860 23 H 0.161 0.839 24 H 0.083 0.917 25 H 0.148 0.852 26 H 0.105 0.895 27 H 0.112 0.888 28 H 0.121 0.879 29 H 0.083 0.917 30 H 0.119 0.881 31 H 0.092 0.908 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.346 -10.866 -4.499 11.993 hybrid contribution 0.375 1.512 0.296 1.586 sum 2.721 -9.354 -4.204 10.610 Atomic orbital electron populations 1.80908 1.14845 1.13766 1.09573 1.29830 0.95872 0.88860 0.91397 1.19103 0.79982 1.06139 0.85331 1.43845 1.56860 1.06196 1.10967 1.19604 1.30742 0.82798 1.13569 0.90124 1.25848 0.95179 1.01841 0.96844 1.69939 1.20333 1.30045 1.32942 0.85056 0.78166 0.77065 0.78790 1.18328 1.21413 1.20447 1.21148 0.82176 0.86889 0.86013 1.90514 1.51608 1.87594 1.20062 1.21641 1.03543 0.90209 1.00279 1.22344 1.00252 0.94512 0.94456 0.90141 1.23017 1.02432 0.93877 0.98600 1.23418 1.00754 0.94057 0.85830 1.88820 1.95377 1.16966 1.31550 1.23522 0.97771 0.83990 0.96866 0.86010 0.83947 0.91663 0.85200 0.89539 0.88762 0.87905 0.91737 0.88146 0.90767 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.29 18.54 20.01 0.37 -22.92 16 2 C 0.26 10.68 12.95 89.44 1.16 11.84 16 3 C 0.22 7.91 4.91 84.57 0.42 8.33 16 4 N -0.46 -20.35 2.60 -645.41 -1.68 -22.03 16 5 C -0.34 -17.33 9.32 84.04 0.78 -16.55 16 6 H 0.08 4.49 7.39 -2.91 -0.02 4.47 16 7 C 0.00 0.23 4.87 84.93 0.41 0.65 16 8 N -0.89 -44.06 9.48 21.66 0.21 -43.85 16 9 Si 0.98 39.78 29.60 68.60 2.03 41.81 16 10 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 11 H -0.29 -11.71 7.11 99.48 0.71 -11.01 16 12 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 13 C 0.45 18.98 7.36 87.66 0.64 19.63 16 14 O -0.61 -31.10 14.23 -3.05 -0.04 -31.15 16 15 C -0.12 -3.44 3.71 29.85 0.11 -3.33 16 16 C -0.10 -2.78 2.71 -9.49 -0.03 -2.81 16 17 H 0.08 2.51 8.06 -2.39 -0.02 2.49 16 18 C -0.14 -2.81 6.60 31.58 0.21 -2.60 16 19 C 0.04 0.80 7.70 72.35 0.56 1.36 16 20 O -0.41 -13.31 11.52 -148.98 -1.72 -15.03 16 21 C 0.05 1.92 6.46 72.66 0.47 2.39 16 22 H 0.12 4.56 6.46 -2.39 -0.02 4.54 16 23 H 0.14 3.37 6.68 -2.38 -0.02 3.35 16 24 H 0.27 13.07 8.31 -92.70 -0.77 12.30 16 25 H 0.13 2.71 7.42 -2.39 -0.02 2.69 16 26 H 0.09 2.51 7.47 -2.39 -0.02 2.49 16 27 H 0.09 1.55 7.86 -2.39 -0.02 1.53 16 28 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 3.05 7.13 -2.39 -0.02 3.03 16 32 H 0.05 1.65 8.02 -2.39 -0.02 1.63 16 Total: -1.00 -67.15 273.09 5.03 -62.12 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 1.13 Total: 12.14 kcal Atomic # 6 Polarization: 14.17 SS G_CDS: 4.73 Total: 18.90 kcal Atomic # 7 Polarization: -87.69 SS G_CDS: -1.10 Total: -88.80 kcal Atomic # 8 Polarization: -44.41 SS G_CDS: -1.76 Total: -46.17 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -67.15 5.03 -62.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322014125.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.779 kcal (2) G-P(sol) polarization free energy of solvation -67.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds