Wall clock time and date at job start Sun Mar 29 2020 22:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.50702 * 109.54552 * 47.53115 * 3 2 1 5 5 O 1.21283 * 120.00262 * 239.82348 * 4 3 2 6 6 N 1.34777 * 119.99928 * 59.54254 * 4 3 2 7 7 C 1.46499 * 120.00199 * 180.27479 * 6 4 3 8 8 C 1.50694 * 109.47550 * 180.02562 * 7 6 4 9 9 H 1.08008 * 119.99963 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00446 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00374 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99796 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.47502 * 89.99760 * 12 10 8 14 14 H 1.48498 * 109.47116 * 209.99875 * 12 10 8 15 15 H 1.48503 * 109.46936 * 329.99405 * 12 10 8 16 16 C 1.53178 * 109.61703 * 167.75228 * 3 2 1 17 17 C 1.53092 * 109.16226 * 62.92663 * 16 3 2 18 18 O 1.42908 * 109.41124 * 57.61522 * 17 16 3 19 19 C 1.42906 * 114.09178 * 298.83637 * 18 17 16 20 20 C 1.53091 * 109.41581 * 61.16661 * 19 18 17 21 21 H 0.97000 * 120.00317 * 0.28382 * 6 4 3 22 22 H 1.08998 * 109.47134 * 300.00670 * 7 6 4 23 23 H 1.09002 * 109.46857 * 59.99862 * 7 6 4 24 24 H 0.97000 * 120.00464 * 179.97438 * 11 10 8 25 25 H 1.08996 * 109.52537 * 182.83559 * 16 3 2 26 26 H 1.09004 * 109.51981 * 303.02939 * 16 3 2 27 27 H 1.08996 * 109.48152 * 297.62763 * 17 16 3 28 28 H 1.08998 * 109.48162 * 177.59419 * 17 16 3 29 29 H 1.08999 * 109.48550 * 301.17518 * 19 18 17 30 30 H 1.09007 * 109.48496 * 181.14836 * 19 18 17 31 31 H 1.08998 * 109.52431 * 182.48583 * 20 19 18 32 32 H 1.09004 * 109.52737 * 62.28768 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1126 -0.9580 -1.0476 5 8 3.8135 -1.8941 -0.7258 6 7 2.7805 -0.7784 -2.3414 7 6 3.2660 -1.7137 -3.3590 8 6 2.7568 -1.2918 -4.7131 9 1 2.1340 -0.4143 -4.8064 10 6 3.0867 -2.0253 -5.8330 11 7 2.6419 -1.6573 -7.0147 12 14 4.1643 -3.5425 -5.6717 13 1 3.3091 -4.7356 -5.4469 14 1 4.9514 -3.7253 -6.9176 15 1 5.0892 -3.3728 -4.5223 16 6 3.1217 1.4109 -0.3061 17 6 2.6700 2.3624 0.8050 18 8 3.1544 1.8877 2.0628 19 6 2.6691 0.5929 2.4238 20 6 3.1207 -0.4297 1.3778 21 1 2.2200 -0.0297 -2.5988 22 1 4.3560 -1.7114 -3.3641 23 1 2.9060 -2.7171 -3.1315 24 1 2.8743 -2.1731 -7.8026 25 1 4.2104 1.3993 -0.3555 26 1 2.7163 1.7470 -1.2605 27 1 1.5811 2.4045 0.8271 28 1 3.0686 3.3588 0.6146 29 1 1.5801 0.6118 2.4672 30 1 3.0670 0.3145 3.3997 31 1 2.7147 -1.4099 1.6276 32 1 4.2095 -0.4784 1.3624 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326671965.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:05 Heat of formation + Delta-G solvation = -62.606307 kcal Electronic energy + Delta-G solvation = -16936.941435 eV Core-core repulsion = 14090.483748 eV Total energy + Delta-G solvation = -2846.457687 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.72639 -38.52523 -36.48720 -34.59171 -33.82863 -32.44973 -31.40199 -28.40681 -26.27781 -23.88084 -22.37590 -21.92298 -20.52677 -18.23261 -17.15411 -16.50117 -16.28100 -15.58765 -15.30613 -14.88797 -14.67219 -14.36182 -14.16336 -13.60591 -13.32690 -12.73639 -12.64168 -12.61385 -12.37861 -12.25832 -12.00826 -11.60489 -11.15702 -10.95106 -10.84517 -10.82145 -10.05902 -10.00258 -9.58348 -9.37881 -8.86814 -8.36922 -6.27848 -4.31449 2.40719 2.56397 2.86088 3.21754 3.28719 3.35330 3.53218 3.69098 3.75523 4.26872 4.36476 4.41268 4.64990 4.84361 4.95526 5.07103 5.15011 5.29494 5.32729 5.43779 5.51314 5.73333 5.79840 5.95474 6.64830 6.91038 6.94056 6.96662 7.25362 7.33736 7.94093 8.33553 8.54179 8.71896 9.30604 10.83947 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.039935 B = 0.006000 C = 0.005773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.968605 B = 4665.721543 C = 4849.263498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C 0.211 3.789 3 C 0.018 3.982 4 C 0.516 3.484 5 O -0.536 6.536 6 N -0.695 5.695 7 C 0.219 3.781 8 C -0.548 4.548 9 H 0.080 0.920 10 C 0.079 3.921 11 N -0.890 5.890 12 Si 0.876 3.124 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.260 1.260 16 C -0.143 4.143 17 C 0.060 3.940 18 O -0.377 6.377 19 C 0.057 3.943 20 C -0.128 4.128 21 H 0.397 0.603 22 H 0.031 0.969 23 H 0.024 0.976 24 H 0.269 0.731 25 H 0.103 0.897 26 H 0.092 0.908 27 H 0.051 0.949 28 H 0.106 0.894 29 H 0.049 0.951 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.948 6.502 15.635 17.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.083 5.083 2 C -0.107 4.107 3 C 0.011 3.989 4 C 0.297 3.703 5 O -0.413 6.413 6 N -0.342 5.342 7 C 0.098 3.902 8 C -0.585 4.585 9 H 0.098 0.902 10 C -0.125 4.125 11 N -0.526 5.526 12 Si 0.703 3.297 13 H -0.198 1.198 14 H -0.208 1.208 15 H -0.184 1.184 16 C -0.182 4.182 17 C -0.017 4.017 18 O -0.295 6.295 19 C -0.020 4.020 20 C -0.167 4.167 21 H 0.231 0.769 22 H 0.049 0.951 23 H 0.041 0.959 24 H 0.079 0.921 25 H 0.121 0.879 26 H 0.110 0.890 27 H 0.069 0.931 28 H 0.124 0.876 29 H 0.067 0.933 30 H 0.123 0.877 31 H 0.108 0.892 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.849 5.864 15.719 16.798 hybrid contribution 0.364 -0.682 -0.592 0.974 sum 1.212 5.182 15.127 16.035 Atomic orbital electron populations 1.81229 1.12039 1.07594 1.07417 1.28503 0.94229 0.93938 0.94074 1.18651 0.82786 0.98697 0.98734 1.19673 0.81805 0.85363 0.83420 1.90699 1.38494 1.31096 1.81027 1.46240 1.50814 1.30903 1.06268 1.19599 0.95484 0.88783 0.86363 1.21047 1.33965 1.14362 0.89168 0.90220 1.24786 0.95344 0.97484 0.94878 1.69872 1.44438 1.39772 0.98554 0.86825 0.81301 0.83303 0.78320 1.19818 1.20775 1.18415 1.22349 1.03999 0.90959 1.00920 1.22643 0.98525 0.97704 0.82837 1.87957 1.71578 1.33146 1.36821 1.22696 0.98378 0.82611 0.98266 1.22127 1.04069 1.00242 0.90248 0.76875 0.95108 0.95860 0.92143 0.87880 0.88950 0.93071 0.87550 0.93286 0.87683 0.89160 0.87795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -6.55 18.54 42.16 0.78 -5.77 16 2 C 0.21 3.02 11.48 -20.76 -0.24 2.78 16 3 C 0.02 0.24 0.58 -158.26 -0.09 0.15 16 4 C 0.52 9.01 6.46 -10.98 -0.07 8.94 16 5 O -0.54 -10.94 15.97 5.55 0.09 -10.85 16 6 N -0.69 -13.35 5.35 -61.47 -0.33 -13.68 16 7 C 0.22 5.16 4.50 -5.20 -0.02 5.13 16 8 C -0.55 -14.63 9.83 -34.44 -0.34 -14.97 16 9 H 0.08 2.23 7.84 -52.48 -0.41 1.82 16 10 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 11 N -0.89 -25.99 13.96 55.43 0.77 -25.22 16 12 Si 0.88 20.86 27.47 -169.99 -4.67 16.19 16 13 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 15 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 16 C -0.14 -1.49 4.78 -26.59 -0.13 -1.62 16 17 C 0.06 0.55 6.61 37.21 0.25 0.80 16 18 O -0.38 -3.98 10.77 -35.23 -0.38 -4.36 16 19 C 0.06 0.55 6.61 37.20 0.25 0.79 16 20 C -0.13 -1.43 4.21 -26.59 -0.11 -1.54 16 21 H 0.40 6.92 7.71 -40.82 -0.31 6.60 16 22 H 0.03 0.75 7.20 -51.93 -0.37 0.37 16 23 H 0.02 0.58 7.57 -51.93 -0.39 0.18 16 24 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.09 0.90 7.71 -51.93 -0.40 0.49 16 27 H 0.05 0.49 7.39 -51.93 -0.38 0.11 16 28 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.48 7.39 -51.93 -0.38 0.10 16 30 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.10 1.16 8.02 -51.93 -0.42 0.74 16 LS Contribution 275.02 15.07 4.14 4.14 Total: -1.00 -31.45 275.02 -4.13 -35.58 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -3.93 Total: 1.39 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -0.61 Total: 2.57 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 1.23 Total: -44.66 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.29 Total: -15.21 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.45 -4.13 -35.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326671965.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.028 kcal (2) G-P(sol) polarization free energy of solvation -31.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds