Wall clock time and date at job start Sun Mar 29 2020 22:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.50702 * 109.54552 * 47.53115 * 3 2 1 5 5 O 1.21283 * 120.00262 * 239.82348 * 4 3 2 6 6 N 1.34777 * 119.99928 * 59.54254 * 4 3 2 7 7 C 1.46499 * 120.00199 * 180.27479 * 6 4 3 8 8 C 1.50694 * 109.47550 * 180.02562 * 7 6 4 9 9 H 1.08008 * 119.99963 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00446 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00374 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99796 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.47502 * 89.99760 * 12 10 8 14 14 H 1.48498 * 109.47116 * 209.99875 * 12 10 8 15 15 H 1.48503 * 109.46936 * 329.99405 * 12 10 8 16 16 C 1.53178 * 109.61703 * 167.75228 * 3 2 1 17 17 C 1.53092 * 109.16226 * 62.92663 * 16 3 2 18 18 O 1.42908 * 109.41124 * 57.61522 * 17 16 3 19 19 C 1.42906 * 114.09178 * 298.83637 * 18 17 16 20 20 C 1.53091 * 109.41581 * 61.16661 * 19 18 17 21 21 H 0.97000 * 120.00317 * 0.28382 * 6 4 3 22 22 H 1.08998 * 109.47134 * 300.00670 * 7 6 4 23 23 H 1.09002 * 109.46857 * 59.99862 * 7 6 4 24 24 H 0.97000 * 120.00464 * 179.97438 * 11 10 8 25 25 H 1.08996 * 109.52537 * 182.83559 * 16 3 2 26 26 H 1.09004 * 109.51981 * 303.02939 * 16 3 2 27 27 H 1.08996 * 109.48152 * 297.62763 * 17 16 3 28 28 H 1.08998 * 109.48162 * 177.59419 * 17 16 3 29 29 H 1.08999 * 109.48550 * 301.17518 * 19 18 17 30 30 H 1.09007 * 109.48496 * 181.14836 * 19 18 17 31 31 H 1.08998 * 109.52431 * 182.48583 * 20 19 18 32 32 H 1.09004 * 109.52737 * 62.28768 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1126 -0.9580 -1.0476 5 8 3.8135 -1.8941 -0.7258 6 7 2.7805 -0.7784 -2.3414 7 6 3.2660 -1.7137 -3.3590 8 6 2.7568 -1.2918 -4.7131 9 1 2.1340 -0.4143 -4.8064 10 6 3.0867 -2.0253 -5.8330 11 7 2.6419 -1.6573 -7.0147 12 14 4.1643 -3.5425 -5.6717 13 1 3.3091 -4.7356 -5.4469 14 1 4.9514 -3.7253 -6.9176 15 1 5.0892 -3.3728 -4.5223 16 6 3.1217 1.4109 -0.3061 17 6 2.6700 2.3624 0.8050 18 8 3.1544 1.8877 2.0628 19 6 2.6691 0.5929 2.4238 20 6 3.1207 -0.4297 1.3778 21 1 2.2200 -0.0297 -2.5988 22 1 4.3560 -1.7114 -3.3641 23 1 2.9060 -2.7171 -3.1315 24 1 2.8743 -2.1731 -7.8026 25 1 4.2104 1.3993 -0.3555 26 1 2.7163 1.7470 -1.2605 27 1 1.5811 2.4045 0.8271 28 1 3.0686 3.3588 0.6146 29 1 1.5801 0.6118 2.4672 30 1 3.0670 0.3145 3.3997 31 1 2.7147 -1.4099 1.6276 32 1 4.2095 -0.4784 1.3624 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326671965.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:05 Heat of formation + Delta-G solvation = -86.084175 kcal Electronic energy + Delta-G solvation = -16937.959512 eV Core-core repulsion = 14090.483748 eV Total energy + Delta-G solvation = -2847.475764 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.88111 -39.71445 -37.64907 -36.32905 -34.94057 -34.38457 -32.23423 -30.18752 -27.44149 -24.75674 -24.14397 -22.87429 -22.05391 -19.80767 -18.34773 -18.07095 -17.26602 -16.92137 -16.51754 -16.20206 -15.96421 -15.56239 -15.48504 -15.00012 -14.72986 -14.43094 -13.98805 -13.88250 -13.66357 -13.41565 -13.07337 -13.05290 -12.71598 -12.40867 -11.94562 -11.85570 -11.74066 -11.64809 -11.06896 -10.93628 -10.55035 -10.07303 -8.40839 -6.49060 1.12777 1.34085 1.36163 1.40822 1.47785 1.54142 2.21666 2.27978 2.55907 2.92627 2.94921 3.36209 3.45726 3.62298 3.85975 4.19447 4.31692 4.38440 4.56138 4.64997 4.73635 4.78250 4.97263 4.99307 5.00716 5.08325 5.21159 5.34856 6.02031 6.16521 6.17253 6.49214 6.64026 7.04319 7.20929 8.73924 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.039935 B = 0.006000 C = 0.005773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.968605 B = 4665.721543 C = 4849.263498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C 0.227 3.773 3 C 0.028 3.972 4 C 0.519 3.481 5 O -0.562 6.562 6 N -0.698 5.698 7 C 0.230 3.770 8 C -0.550 4.550 9 H 0.056 0.944 10 C 0.026 3.974 11 N -0.932 5.932 12 Si 0.938 3.062 13 H -0.268 1.268 14 H -0.274 1.274 15 H -0.252 1.252 16 C -0.143 4.143 17 C 0.061 3.939 18 O -0.384 6.384 19 C 0.061 3.939 20 C -0.127 4.127 21 H 0.406 0.594 22 H 0.028 0.972 23 H 0.014 0.986 24 H 0.273 0.727 25 H 0.112 0.888 26 H 0.098 0.902 27 H 0.048 0.952 28 H 0.132 0.868 29 H 0.046 0.954 30 H 0.130 0.870 31 H 0.087 0.913 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.843 6.736 17.163 18.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.112 5.112 2 C -0.091 4.091 3 C 0.021 3.979 4 C 0.303 3.697 5 O -0.441 6.441 6 N -0.347 5.347 7 C 0.107 3.893 8 C -0.588 4.588 9 H 0.074 0.926 10 C -0.174 4.174 11 N -0.570 5.570 12 Si 0.761 3.239 13 H -0.193 1.193 14 H -0.199 1.199 15 H -0.175 1.175 16 C -0.182 4.182 17 C -0.015 4.015 18 O -0.303 6.303 19 C -0.015 4.015 20 C -0.166 4.166 21 H 0.241 0.759 22 H 0.046 0.954 23 H 0.032 0.968 24 H 0.082 0.918 25 H 0.130 0.870 26 H 0.117 0.883 27 H 0.066 0.934 28 H 0.149 0.851 29 H 0.064 0.936 30 H 0.148 0.852 31 H 0.106 0.894 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.732 6.122 17.273 18.407 hybrid contribution 0.051 -0.710 -1.055 1.272 sum 1.783 5.413 16.218 17.190 Atomic orbital electron populations 1.81250 1.12962 1.08644 1.08392 1.28655 0.94300 0.92984 0.93149 1.18692 0.81858 0.99161 0.98146 1.20281 0.80805 0.85404 0.83250 1.90684 1.39618 1.32397 1.81434 1.46092 1.51373 1.30723 1.06500 1.19218 0.95068 0.89133 0.85894 1.21269 1.33215 1.13459 0.90867 0.92598 1.25624 0.96720 1.00526 0.94543 1.69985 1.46147 1.41428 0.99460 0.85851 0.79732 0.79547 0.78767 1.19346 1.19895 1.17531 1.22462 1.04531 0.89274 1.01912 1.22748 0.98491 0.98397 0.81879 1.87960 1.71731 1.33369 1.37217 1.22764 0.98322 0.81778 0.98671 1.22202 1.04196 1.00784 0.89398 0.75916 0.95430 0.96775 0.91829 0.86984 0.88302 0.93364 0.85067 0.93550 0.85244 0.89416 0.87460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -13.67 18.54 20.01 0.37 -13.29 16 2 C 0.23 6.22 11.48 89.44 1.03 7.25 16 3 C 0.03 0.69 0.58 -54.61 -0.03 0.66 16 4 C 0.52 17.52 6.46 87.66 0.57 18.09 16 5 O -0.56 -22.33 15.97 -3.04 -0.05 -22.38 16 6 N -0.70 -26.39 5.35 -466.79 -2.50 -28.89 16 7 C 0.23 10.71 4.50 85.63 0.38 11.10 16 8 C -0.55 -29.64 9.83 25.60 0.25 -29.39 16 9 H 0.06 3.20 7.84 -2.91 -0.02 3.18 16 10 C 0.03 1.46 5.47 84.66 0.46 1.92 16 11 N -0.93 -55.03 13.96 21.45 0.30 -54.73 16 12 Si 0.94 42.67 27.47 68.60 1.88 44.55 16 13 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 14 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 15 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 16 C -0.14 -2.65 4.78 30.68 0.15 -2.50 16 17 C 0.06 0.97 6.61 72.01 0.48 1.45 16 18 O -0.38 -6.99 10.77 -148.98 -1.60 -8.59 16 19 C 0.06 1.01 6.61 72.01 0.48 1.48 16 20 C -0.13 -2.58 4.21 30.68 0.13 -2.45 16 21 H 0.41 13.95 7.71 -92.71 -0.71 13.24 16 22 H 0.03 1.31 7.20 -2.39 -0.02 1.30 16 23 H 0.01 0.69 7.57 -2.39 -0.02 0.68 16 24 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 25 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.10 1.71 7.71 -2.38 -0.02 1.70 16 27 H 0.05 0.81 7.39 -2.39 -0.02 0.79 16 28 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.05 0.80 7.39 -2.39 -0.02 0.78 16 30 H 0.13 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.11 2.15 8.02 -2.38 -0.02 2.13 16 Total: -1.00 -66.65 275.02 2.66 -63.99 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.37 Total: 11.73 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 3.89 Total: 7.61 kcal Atomic # 7 Polarization: -95.08 SS G_CDS: -1.83 Total: -96.91 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -1.65 Total: -30.98 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.88 Total: 44.55 kcal Total: -66.65 2.66 -63.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326671965.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.093 kcal (2) G-P(sol) polarization free energy of solvation -66.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds