Wall clock time and date at job start Sun Mar 29 2020 22:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00237 * 2 1 4 4 H 1.48501 * 109.46909 * 270.00011 * 3 2 1 5 5 H 1.48505 * 109.47218 * 29.99707 * 3 2 1 6 6 H 1.48495 * 109.47005 * 149.99725 * 3 2 1 7 7 C 1.37878 * 119.99477 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99790 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00375 * 0.02562 * 7 2 1 10 10 O 1.42891 * 110.28691 * 60.67671 * 9 7 2 11 11 C 1.54259 * 110.32157 * 298.54694 * 9 7 2 12 12 C 1.54387 * 105.06271 * 241.10373 * 11 9 7 13 13 N 1.48559 * 104.58955 * 336.15098 * 12 11 9 14 14 C 1.46904 * 111.00066 * 159.04379 * 13 12 11 15 15 C 1.50698 * 109.47407 * 69.86567 * 14 13 12 16 16 C 1.35455 * 126.77083 * 90.00070 * 15 14 13 17 17 C 1.41385 * 103.97981 * 179.97438 * 16 15 14 18 18 N 1.30166 * 106.39832 * 0.02562 * 17 16 15 19 19 O 1.20921 * 111.60917 * 359.71846 * 18 17 16 20 20 C 1.48560 * 104.22567 * 39.48140 * 13 12 11 21 21 H 0.97001 * 119.99820 * 0.02562 * 1 2 3 22 22 H 0.96701 * 113.99998 * 299.32512 * 10 9 7 23 23 H 1.09000 * 110.32330 * 122.20959 * 11 9 7 24 24 H 1.09003 * 110.41347 * 0.04301 * 11 9 7 25 25 H 1.08999 * 110.41133 * 94.92454 * 12 11 9 26 26 H 1.08999 * 110.41276 * 217.37423 * 12 11 9 27 27 H 1.08996 * 109.47493 * 189.87547 * 14 13 12 28 28 H 1.09004 * 109.46624 * 309.87385 * 14 13 12 29 29 H 1.07999 * 128.00749 * 359.97438 * 16 15 14 30 30 H 1.08003 * 126.79732 * 179.97438 * 17 16 15 31 31 H 1.09004 * 110.40940 * 201.73469 * 20 13 12 32 32 H 1.08995 * 110.40669 * 79.29476 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 0.4352 -2.6003 -1.1683 11 6 0.3838 -2.6172 1.2709 12 6 0.9168 -3.8659 2.0059 13 7 1.5545 -4.6829 0.9415 14 6 2.5207 -5.6306 1.5129 15 6 1.7837 -6.6995 2.2778 16 6 1.3278 -7.8779 1.7893 17 6 0.7208 -8.4983 2.9054 18 7 0.8622 -7.6764 3.9047 19 8 1.4544 -6.6744 3.5769 20 6 2.2348 -3.6864 0.0747 21 1 -0.4850 0.8401 -0.0004 22 1 -0.2317 -1.9041 -1.2440 23 1 -0.6638 -2.7541 1.0029 24 1 0.5016 -1.7315 1.8953 25 1 1.6526 -3.5796 2.7574 26 1 0.0958 -4.4154 2.4663 27 1 3.0972 -6.0901 0.7101 28 1 3.1942 -5.1008 2.1866 29 1 1.4092 -8.2558 0.7809 30 1 0.2353 -9.4629 2.9246 31 1 2.4062 -4.1009 -0.9188 32 1 3.1768 -3.3721 0.5241 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328181069.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:09 Heat of formation + Delta-G solvation = 21.040776 kcal Electronic energy + Delta-G solvation = -17134.948456 eV Core-core repulsion = 14292.117978 eV Total energy + Delta-G solvation = -2842.830478 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.77205 -38.45051 -35.16259 -33.73153 -32.29468 -32.13785 -29.50645 -27.97573 -25.88427 -23.99173 -23.32683 -21.37781 -20.35668 -19.48049 -17.43157 -17.31900 -16.80748 -15.46964 -15.14265 -14.87214 -14.32247 -13.88205 -13.68280 -13.27965 -12.87672 -12.53013 -12.31447 -11.57797 -11.32332 -11.29845 -11.09648 -10.94725 -10.58948 -10.53842 -10.41020 -10.35549 -9.88876 -9.33548 -9.15288 -8.60571 -8.15668 -7.95104 -6.22659 -4.31910 1.58243 2.38993 3.20149 3.21461 3.28861 3.31242 4.27661 4.44815 4.61548 4.66274 5.05104 5.16873 5.34428 5.44352 5.65610 5.73543 5.79454 5.95085 5.97377 6.12560 6.15855 6.38527 6.54714 6.87131 7.00078 7.26501 7.43086 7.47462 7.55151 7.78114 8.16392 8.34729 8.71032 9.37164 9.53744 10.84070 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.051431 B = 0.005717 C = 0.005654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.283148 B = 4896.223972 C = 4950.820825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.070 3.930 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.061 0.939 9 C 0.254 3.746 10 O -0.586 6.586 11 C -0.119 4.119 12 C 0.031 3.969 13 N -0.506 5.506 14 C 0.118 3.882 15 C -0.006 4.006 16 C -0.225 4.225 17 C -0.014 4.014 18 N -0.373 5.373 19 O 0.094 5.906 20 C 0.051 3.949 21 H 0.267 0.733 22 H 0.380 0.620 23 H 0.055 0.945 24 H 0.073 0.927 25 H 0.039 0.961 26 H 0.062 0.938 27 H 0.105 0.895 28 H 0.058 0.942 29 H 0.171 0.829 30 H 0.188 0.812 31 H 0.077 0.923 32 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.188 -10.571 3.055 11.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.132 4.132 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.577 4.577 8 H 0.079 0.921 9 C 0.214 3.786 10 O -0.394 6.394 11 C -0.158 4.158 12 C -0.097 4.097 13 N -0.231 5.231 14 C -0.012 4.012 15 C -0.070 4.070 16 C -0.248 4.248 17 C -0.193 4.193 18 N -0.077 5.077 19 O 0.029 5.971 20 C -0.075 4.075 21 H 0.077 0.923 22 H 0.230 0.770 23 H 0.073 0.927 24 H 0.091 0.909 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.123 0.877 28 H 0.076 0.924 29 H 0.188 0.812 30 H 0.205 0.795 31 H 0.095 0.905 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.664 -11.327 3.964 12.293 hybrid contribution 0.676 1.533 -0.206 1.688 sum 3.340 -9.794 3.758 11.009 Atomic orbital electron populations 1.69707 1.05927 1.27493 1.50160 1.25000 0.94977 0.99426 0.93808 0.86483 0.79806 0.82764 0.78290 1.20437 1.21090 1.19835 1.21699 0.93504 0.90774 1.51772 0.92125 1.19196 0.86641 0.90424 0.82381 1.86123 1.51993 1.55543 1.45781 1.22860 0.99441 0.94485 0.99012 1.23216 0.97996 0.95249 0.93244 1.65521 1.25978 1.15171 1.16475 1.20732 0.92580 0.91611 0.96235 1.24523 1.00472 0.97979 0.84057 1.22524 1.05146 0.95639 1.01482 1.25017 1.03018 1.01807 0.89419 1.73857 1.12980 0.96012 1.24861 1.84808 1.53937 1.33189 1.25210 1.23114 0.96128 0.91893 0.96410 0.92269 0.77033 0.92660 0.90867 0.94272 0.91932 0.87695 0.92432 0.81166 0.79533 0.90507 0.93184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.59 10.81 55.43 0.60 -22.99 16 2 C 0.07 1.83 5.02 -17.82 -0.09 1.74 16 3 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 7 C -0.54 -14.06 8.08 -34.44 -0.28 -14.34 16 8 H 0.06 1.56 7.58 -52.48 -0.40 1.16 16 9 C 0.25 6.18 1.05 -90.39 -0.10 6.08 16 10 O -0.59 -15.23 12.94 -35.23 -0.46 -15.69 16 11 C -0.12 -2.75 5.55 -25.35 -0.14 -2.89 16 12 C 0.03 0.60 5.98 -2.18 -0.01 0.59 16 13 N -0.51 -9.39 5.36 -231.41 -1.24 -10.63 16 14 C 0.12 1.71 5.38 -4.97 -0.03 1.68 16 15 C -0.01 -0.09 6.48 -35.30 -0.23 -0.32 16 16 C -0.23 -2.88 11.09 -39.38 -0.44 -3.31 16 17 C -0.01 -0.18 12.17 -17.06 -0.21 -0.39 16 18 N -0.37 -5.76 12.07 30.35 0.37 -5.39 16 19 O 0.09 1.49 11.20 17.17 0.19 1.68 16 20 C 0.05 1.05 5.76 -2.18 -0.01 1.04 16 21 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 22 H 0.38 10.01 7.32 45.56 0.33 10.35 16 23 H 0.05 1.33 7.98 -51.93 -0.41 0.91 16 24 H 0.07 1.81 7.24 -51.93 -0.38 1.43 16 25 H 0.04 0.73 7.82 -51.93 -0.41 0.33 16 26 H 0.06 1.20 8.12 -51.93 -0.42 0.78 16 27 H 0.10 1.28 8.13 -51.93 -0.42 0.86 16 28 H 0.06 0.79 7.88 -51.93 -0.41 0.38 16 29 H 0.17 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.19 1.67 8.06 -52.48 -0.42 1.25 16 31 H 0.08 1.56 8.08 -51.93 -0.42 1.14 16 32 H 0.05 0.98 7.56 -51.93 -0.39 0.59 16 LS Contribution 271.96 15.07 4.10 4.10 Total: -1.00 -28.16 271.96 -6.30 -34.46 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -3.31 Total: 9.36 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -1.53 Total: -10.13 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: -0.28 Total: -39.01 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.26 Total: -14.01 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.16 -6.30 -34.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328181069.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.501 kcal (2) G-P(sol) polarization free energy of solvation -28.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds