Wall clock time and date at job start Sun Mar 29 2020 22:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00237 * 2 1 4 4 H 1.48501 * 109.46909 * 270.00011 * 3 2 1 5 5 H 1.48505 * 109.47218 * 29.99707 * 3 2 1 6 6 H 1.48495 * 109.47005 * 149.99725 * 3 2 1 7 7 C 1.37878 * 119.99477 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99790 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00375 * 0.02562 * 7 2 1 10 10 O 1.42891 * 110.28691 * 60.67671 * 9 7 2 11 11 C 1.54259 * 110.32157 * 298.54694 * 9 7 2 12 12 C 1.54387 * 105.06271 * 241.10373 * 11 9 7 13 13 N 1.48559 * 104.58955 * 336.15098 * 12 11 9 14 14 C 1.46904 * 111.00066 * 159.04379 * 13 12 11 15 15 C 1.50698 * 109.47407 * 69.86567 * 14 13 12 16 16 C 1.35455 * 126.77083 * 90.00070 * 15 14 13 17 17 C 1.41385 * 103.97981 * 179.97438 * 16 15 14 18 18 N 1.30166 * 106.39832 * 0.02562 * 17 16 15 19 19 O 1.20921 * 111.60917 * 359.71846 * 18 17 16 20 20 C 1.48560 * 104.22567 * 39.48140 * 13 12 11 21 21 H 0.97001 * 119.99820 * 0.02562 * 1 2 3 22 22 H 0.96701 * 113.99998 * 299.32512 * 10 9 7 23 23 H 1.09000 * 110.32330 * 122.20959 * 11 9 7 24 24 H 1.09003 * 110.41347 * 0.04301 * 11 9 7 25 25 H 1.08999 * 110.41133 * 94.92454 * 12 11 9 26 26 H 1.08999 * 110.41276 * 217.37423 * 12 11 9 27 27 H 1.08996 * 109.47493 * 189.87547 * 14 13 12 28 28 H 1.09004 * 109.46624 * 309.87385 * 14 13 12 29 29 H 1.07999 * 128.00749 * 359.97438 * 16 15 14 30 30 H 1.08003 * 126.79732 * 179.97438 * 17 16 15 31 31 H 1.09004 * 110.40940 * 201.73469 * 20 13 12 32 32 H 1.08995 * 110.40669 * 79.29476 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 0.4352 -2.6003 -1.1683 11 6 0.3838 -2.6172 1.2709 12 6 0.9168 -3.8659 2.0059 13 7 1.5545 -4.6829 0.9415 14 6 2.5207 -5.6306 1.5129 15 6 1.7837 -6.6995 2.2778 16 6 1.3278 -7.8779 1.7893 17 6 0.7208 -8.4983 2.9054 18 7 0.8622 -7.6764 3.9047 19 8 1.4544 -6.6744 3.5769 20 6 2.2348 -3.6864 0.0747 21 1 -0.4850 0.8401 -0.0004 22 1 -0.2317 -1.9041 -1.2440 23 1 -0.6638 -2.7541 1.0029 24 1 0.5016 -1.7315 1.8953 25 1 1.6526 -3.5796 2.7574 26 1 0.0958 -4.4154 2.4663 27 1 3.0972 -6.0901 0.7101 28 1 3.1942 -5.1008 2.1866 29 1 1.4092 -8.2558 0.7809 30 1 0.2353 -9.4629 2.9246 31 1 2.4062 -4.1009 -0.9188 32 1 3.1768 -3.3721 0.5241 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328181069.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:09 Heat of formation + Delta-G solvation = 0.150036 kcal Electronic energy + Delta-G solvation = -17135.854346 eV Core-core repulsion = 14292.117978 eV Total energy + Delta-G solvation = -2843.736368 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.82057 -40.09583 -36.86955 -34.79269 -34.14764 -33.61002 -31.02027 -29.72491 -27.43096 -25.66878 -24.35570 -22.62475 -21.77294 -21.29602 -19.06390 -18.52093 -18.15359 -17.16892 -16.82320 -16.17703 -15.88651 -15.32358 -15.23836 -14.59205 -14.26823 -14.09884 -13.91862 -13.23904 -12.97621 -12.91376 -12.71422 -12.45780 -12.31767 -12.19029 -12.11014 -11.72466 -11.38968 -11.07010 -10.60277 -10.40011 -10.08237 -9.43907 -8.19632 -6.35961 0.50132 1.41704 1.42643 1.45013 1.53627 2.14714 2.40246 3.06102 3.19877 3.52135 3.61078 3.97360 4.07804 4.12045 4.23761 4.35299 4.48448 4.55897 4.69843 4.72470 4.84896 4.88406 5.13968 5.19762 5.21379 5.45135 5.59868 5.66706 5.83849 6.04846 6.24090 6.71773 7.29816 7.36109 7.48796 8.85747 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.051431 B = 0.005717 C = 0.005654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.283148 B = 4896.223972 C = 4950.820825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.028 3.972 3 Si 0.959 3.041 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.559 4.559 8 H 0.060 0.940 9 C 0.234 3.766 10 O -0.595 6.595 11 C -0.112 4.112 12 C 0.043 3.957 13 N -0.512 5.512 14 C 0.119 3.881 15 C -0.025 4.025 16 C -0.217 4.217 17 C -0.006 4.006 18 N -0.402 5.402 19 O 0.070 5.930 20 C 0.061 3.939 21 H 0.268 0.732 22 H 0.373 0.627 23 H 0.035 0.965 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.133 0.867 28 H 0.066 0.934 29 H 0.196 0.804 30 H 0.222 0.778 31 H 0.080 0.920 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.163 -11.786 2.980 12.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.173 4.173 3 Si 0.785 3.215 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.598 4.598 8 H 0.078 0.922 9 C 0.195 3.805 10 O -0.403 6.403 11 C -0.151 4.151 12 C -0.085 4.085 13 N -0.236 5.236 14 C -0.009 4.009 15 C -0.088 4.088 16 C -0.239 4.239 17 C -0.184 4.184 18 N -0.109 5.109 19 O 0.008 5.992 20 C -0.066 4.066 21 H 0.077 0.923 22 H 0.222 0.778 23 H 0.054 0.946 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.151 0.849 28 H 0.084 0.916 29 H 0.214 0.786 30 H 0.239 0.761 31 H 0.098 0.902 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.663 -12.541 3.889 13.631 hybrid contribution 0.338 1.840 -0.196 1.881 sum 4.001 -10.701 3.693 12.007 Atomic orbital electron populations 1.69802 1.06978 1.28114 1.50412 1.25702 0.95740 1.02342 0.93470 0.85548 0.78750 0.79082 0.78170 1.20265 1.20937 1.19272 1.21997 0.93672 0.91993 1.52106 0.92208 1.19515 0.87248 0.91729 0.82047 1.86116 1.52039 1.55254 1.46899 1.22655 0.98331 0.95336 0.98772 1.23032 0.98364 0.93818 0.93273 1.65430 1.27286 1.14723 1.16209 1.20835 0.91888 0.90904 0.97279 1.24621 1.01476 0.98754 0.83987 1.22935 1.03628 0.94764 1.02532 1.25654 1.01712 1.02466 0.88564 1.73860 1.14128 0.96673 1.26267 1.84778 1.54742 1.33765 1.25941 1.22940 0.95450 0.91005 0.97230 0.92257 0.77832 0.94593 0.93246 0.93393 0.91633 0.84901 0.91580 0.78639 0.76104 0.90209 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.93 10.81 21.45 0.23 -48.69 16 2 C 0.03 1.45 5.02 84.66 0.43 1.88 16 3 Si 0.96 41.45 29.54 68.60 2.03 43.48 16 4 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.56 -29.22 8.08 25.60 0.21 -29.01 16 8 H 0.06 3.05 7.58 -2.91 -0.02 3.03 16 9 C 0.23 11.44 1.05 -10.65 -0.01 11.43 16 10 O -0.60 -31.33 12.94 -148.98 -1.93 -33.26 16 11 C -0.11 -5.26 5.55 31.49 0.17 -5.08 16 12 C 0.04 1.66 5.98 86.45 0.52 2.17 16 13 N -0.51 -18.10 5.36 -886.03 -4.75 -22.85 16 14 C 0.12 3.16 5.38 85.56 0.46 3.62 16 15 C -0.02 -0.66 6.48 25.04 0.16 -0.49 16 16 C -0.22 -4.84 11.09 22.40 0.25 -4.60 16 17 C -0.01 -0.13 12.17 85.71 1.04 0.91 16 18 N -0.40 -11.76 12.07 -59.27 -0.72 -12.48 16 19 O 0.07 2.12 11.20 71.61 0.80 2.92 16 20 C 0.06 2.42 5.76 86.45 0.50 2.92 16 21 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 22 H 0.37 20.20 7.32 -74.06 -0.54 19.66 16 23 H 0.04 1.77 7.98 -2.39 -0.02 1.75 16 24 H 0.05 2.50 7.24 -2.39 -0.02 2.48 16 25 H 0.05 1.75 7.82 -2.39 -0.02 1.73 16 26 H 0.07 2.48 8.12 -2.39 -0.02 2.46 16 27 H 0.13 2.76 8.13 -2.39 -0.02 2.74 16 28 H 0.07 1.66 7.88 -2.38 -0.02 1.64 16 29 H 0.20 3.25 8.06 -2.91 -0.02 3.22 16 30 H 0.22 3.11 8.06 -2.91 -0.02 3.09 16 31 H 0.08 3.11 8.08 -2.39 -0.02 3.09 16 32 H 0.06 2.24 7.56 -2.39 -0.02 2.22 16 Total: -1.00 -60.14 271.96 -0.02 -60.16 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 0.59 Total: 26.97 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: 3.72 Total: -16.26 kcal Atomic # 7 Polarization: -78.79 SS G_CDS: -5.23 Total: -84.02 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -1.13 Total: -30.34 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -60.14 -0.02 -60.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328181069.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.313 kcal (2) G-P(sol) polarization free energy of solvation -60.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds