Wall clock time and date at job start Sun Mar 29 2020 22:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39866 * 125.89915 * 2 1 4 4 C 1.35320 * 107.91898 * 179.97438 * 3 2 1 5 5 N 1.34951 * 107.74569 * 359.97438 * 4 3 2 6 6 C 1.46504 * 126.03463 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.46651 * 155.03042 * 6 5 4 8 8 C 1.52997 * 109.47189 * 35.02674 * 6 5 4 9 9 C 1.52998 * 109.46978 * 275.02274 * 6 5 4 10 10 C 1.50700 * 109.47233 * 184.99861 * 9 6 5 11 11 O 1.21213 * 119.99768 * 0.02562 * 10 9 6 12 12 O 1.34309 * 120.00139 * 180.02562 * 10 9 6 13 13 C 1.34920 * 117.00034 * 180.02562 * 12 10 9 14 14 H 1.08000 * 119.99931 * 359.97438 * 13 12 10 15 15 C 1.38754 * 120.00119 * 180.02562 * 13 12 10 16 16 N 1.31441 * 119.99688 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99925 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46745 * 60.00346 * 17 15 13 19 19 H 1.48499 * 109.46789 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47274 * 300.00378 * 17 15 13 21 21 N 1.30844 * 125.89476 * 179.97438 * 2 1 3 22 22 H 1.09006 * 109.47315 * 270.01690 * 1 2 3 23 23 H 1.08994 * 109.47486 * 30.01360 * 1 2 3 24 24 H 1.09006 * 109.47537 * 150.01822 * 1 2 3 25 25 H 1.07993 * 126.04141 * 359.97438 * 3 2 1 26 26 H 1.07996 * 126.12765 * 180.02562 * 4 3 2 27 27 H 1.09004 * 109.46920 * 180.02562 * 8 6 5 28 28 H 1.09002 * 109.47246 * 299.99451 * 8 6 5 29 29 H 1.08998 * 109.47038 * 59.99763 * 8 6 5 30 30 H 1.08996 * 109.47339 * 305.00744 * 9 6 5 31 31 H 1.09003 * 109.47028 * 65.00600 * 9 6 5 32 32 H 0.97006 * 119.99934 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7153 0.0006 5 7 3.6087 -0.6342 0.0015 6 6 4.7899 -1.5009 0.0029 7 1 4.5313 -2.4666 0.4372 8 6 5.8993 -0.8497 0.8311 9 6 5.2767 -1.7018 -1.4336 10 6 6.4147 -2.6896 -1.4448 11 8 6.7981 -3.1843 -0.4068 12 8 7.0042 -3.0218 -2.6050 13 6 8.0164 -3.9119 -2.5450 14 1 8.3185 -4.3226 -1.5929 15 6 8.6698 -4.2988 -3.7063 16 7 8.3023 -3.7985 -4.8649 17 14 10.0716 -5.5307 -3.6230 18 1 9.5755 -6.8069 -3.0483 19 1 10.5982 -5.7744 -4.9900 20 1 11.1558 -4.9896 -2.7646 21 7 2.2741 -1.0600 0.0005 22 1 -0.3634 0.0003 1.0277 23 1 -0.3634 0.8898 -0.5140 24 1 -0.3634 -0.8902 -0.5136 25 1 1.9923 2.1597 -0.0004 26 1 4.4891 1.3484 0.0011 27 1 6.7782 -1.4944 0.8317 28 1 6.1578 0.1160 0.3967 29 1 5.5524 -0.7066 1.8545 30 1 4.4585 -2.0830 -2.0446 31 1 5.6187 -0.7490 -1.8379 32 1 8.7594 -4.0688 -5.6768 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330220756.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:13 Heat of formation + Delta-G solvation = -11.062197 kcal Electronic energy + Delta-G solvation = -16440.035870 eV Core-core repulsion = 13595.813303 eV Total energy + Delta-G solvation = -2844.222567 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.15279 -39.18195 -36.17469 -34.65388 -32.21327 -31.59873 -29.86635 -28.35192 -27.18004 -25.25300 -22.89735 -20.64709 -19.78366 -19.42337 -17.83345 -17.24994 -16.02795 -15.38982 -15.05994 -14.52934 -14.37446 -14.10809 -13.78333 -13.29921 -13.25843 -12.79472 -12.41760 -12.29686 -12.04766 -11.92804 -11.60329 -11.24353 -11.12738 -10.95529 -10.49937 -10.46059 -10.36902 -9.87846 -9.17734 -9.06562 -8.62995 -8.45045 -6.46279 -4.14967 2.01593 2.55079 2.87298 3.08142 3.16009 3.20119 3.43281 3.91466 4.50542 4.60269 4.85089 4.94966 4.99464 5.08778 5.27729 5.32526 5.56901 5.63454 5.72573 5.75551 5.84388 5.86805 5.97452 6.10505 6.21168 6.37887 6.65717 6.79049 7.17615 7.33997 7.88363 7.88980 8.61760 9.01898 9.76821 10.71341 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.051760 B = 0.004675 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.832995 B = 5987.347062 C = 6193.419948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.061 3.939 3 C -0.280 4.280 4 C 0.060 3.940 5 N -0.360 5.360 6 C 0.175 3.825 7 H 0.111 0.889 8 C -0.166 4.166 9 C -0.116 4.116 10 C 0.403 3.597 11 O -0.555 6.555 12 O -0.210 6.210 13 C -0.385 4.385 14 H 0.097 0.903 15 C 0.043 3.957 16 N -0.864 5.864 17 Si 0.945 3.055 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.269 1.269 21 N -0.295 5.295 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.143 0.857 26 H 0.171 0.829 27 H 0.107 0.893 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.190 9.219 7.516 15.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.105 4.105 3 C -0.310 4.310 4 C -0.087 4.087 5 N -0.142 5.142 6 C 0.074 3.926 7 H 0.129 0.871 8 C -0.224 4.224 9 C -0.155 4.155 10 C 0.249 3.751 11 O -0.454 6.454 12 O -0.117 6.117 13 C -0.461 4.461 14 H 0.115 0.885 15 C -0.162 4.162 16 N -0.500 5.500 17 Si 0.770 3.230 18 H -0.194 1.194 19 H -0.203 1.203 20 H -0.194 1.194 21 N -0.118 5.118 22 H 0.091 0.909 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.161 0.839 26 H 0.188 0.812 27 H 0.125 0.875 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.853 7.703 7.519 13.937 hybrid contribution 0.732 0.412 -0.132 0.850 sum -8.121 8.115 7.387 13.652 Atomic orbital electron populations 1.20126 0.87017 1.03060 1.02596 1.22335 0.96837 0.90974 1.00324 1.21319 0.91667 0.99542 1.18434 1.22511 0.99521 0.85499 1.01174 1.48937 1.05095 1.04611 1.55530 1.21009 0.81315 0.94487 0.95835 0.87095 1.22323 0.99336 1.01732 0.99001 1.21438 0.97283 0.99881 0.96859 1.22675 0.84895 0.84003 0.83534 1.90531 1.65604 1.55566 1.33687 1.83870 1.43234 1.53410 1.31138 1.21204 1.09157 1.19982 0.95755 0.88545 1.25363 0.98658 0.98069 0.94064 1.69988 1.40284 1.41630 0.98113 0.85722 0.79805 0.79856 0.77665 1.19416 1.20332 1.19433 1.77338 0.86689 1.22960 1.24798 0.90875 0.90689 0.91081 0.83883 0.81172 0.87465 0.92230 0.92039 0.88360 0.88609 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.45 36.00 0.38 -0.30 16 2 C 0.06 0.85 7.22 -82.41 -0.59 0.25 16 3 C -0.28 -3.49 10.74 -40.01 -0.43 -3.92 16 4 C 0.06 0.78 10.59 -17.22 -0.18 0.59 16 5 N -0.36 -5.60 3.53 -54.86 -0.19 -5.80 16 6 C 0.17 2.84 3.05 -67.93 -0.21 2.64 16 7 H 0.11 1.97 7.95 -51.93 -0.41 1.55 16 8 C -0.17 -2.38 8.58 37.16 0.32 -2.06 16 9 C -0.12 -2.11 5.61 -27.88 -0.16 -2.27 16 10 C 0.40 9.57 7.62 36.01 0.27 9.84 16 11 O -0.56 -13.88 13.20 -19.05 -0.25 -14.14 16 12 O -0.21 -5.95 9.75 -20.69 -0.20 -6.15 16 13 C -0.38 -11.24 9.65 30.92 0.30 -10.94 16 14 H 0.10 2.80 6.86 -52.49 -0.36 2.44 16 15 C 0.04 1.20 5.49 -17.53 -0.10 1.10 16 16 N -0.86 -25.22 13.67 55.48 0.76 -24.46 16 17 Si 0.95 21.09 29.55 -169.99 -5.02 16.06 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 21 N -0.30 -4.91 12.58 33.67 0.42 -4.48 16 22 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 26 H 0.17 1.69 7.26 -52.49 -0.38 1.31 16 27 H 0.11 1.81 5.95 -51.93 -0.31 1.50 16 28 H 0.06 0.73 7.16 -51.93 -0.37 0.36 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 31 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 32 H 0.27 7.25 8.31 -40.82 -0.34 6.92 16 LS Contribution 282.98 15.07 4.26 4.26 Total: -1.00 -33.13 282.98 -4.55 -37.68 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -3.93 Total: 2.08 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -0.40 Total: -5.06 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.99 Total: -34.74 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.45 Total: -20.29 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -33.13 -4.55 -37.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330220756.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.618 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds