Wall clock time and date at job start Sun Mar 29 2020 22:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39866 * 125.89915 * 2 1 4 4 C 1.35320 * 107.91898 * 179.97438 * 3 2 1 5 5 N 1.34951 * 107.74569 * 359.97438 * 4 3 2 6 6 C 1.46504 * 126.03463 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.46651 * 155.03042 * 6 5 4 8 8 C 1.52997 * 109.47189 * 35.02674 * 6 5 4 9 9 C 1.52998 * 109.46978 * 275.02274 * 6 5 4 10 10 C 1.50700 * 109.47233 * 184.99861 * 9 6 5 11 11 O 1.21213 * 119.99768 * 0.02562 * 10 9 6 12 12 O 1.34309 * 120.00139 * 180.02562 * 10 9 6 13 13 C 1.34920 * 117.00034 * 180.02562 * 12 10 9 14 14 H 1.08000 * 119.99931 * 359.97438 * 13 12 10 15 15 C 1.38754 * 120.00119 * 180.02562 * 13 12 10 16 16 N 1.31441 * 119.99688 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99925 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46745 * 60.00346 * 17 15 13 19 19 H 1.48499 * 109.46789 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47274 * 300.00378 * 17 15 13 21 21 N 1.30844 * 125.89476 * 179.97438 * 2 1 3 22 22 H 1.09006 * 109.47315 * 270.01690 * 1 2 3 23 23 H 1.08994 * 109.47486 * 30.01360 * 1 2 3 24 24 H 1.09006 * 109.47537 * 150.01822 * 1 2 3 25 25 H 1.07993 * 126.04141 * 359.97438 * 3 2 1 26 26 H 1.07996 * 126.12765 * 180.02562 * 4 3 2 27 27 H 1.09004 * 109.46920 * 180.02562 * 8 6 5 28 28 H 1.09002 * 109.47246 * 299.99451 * 8 6 5 29 29 H 1.08998 * 109.47038 * 59.99763 * 8 6 5 30 30 H 1.08996 * 109.47339 * 305.00744 * 9 6 5 31 31 H 1.09003 * 109.47028 * 65.00600 * 9 6 5 32 32 H 0.97006 * 119.99934 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7153 0.0006 5 7 3.6087 -0.6342 0.0015 6 6 4.7899 -1.5009 0.0029 7 1 4.5313 -2.4666 0.4372 8 6 5.8993 -0.8497 0.8311 9 6 5.2767 -1.7018 -1.4336 10 6 6.4147 -2.6896 -1.4448 11 8 6.7981 -3.1843 -0.4068 12 8 7.0042 -3.0218 -2.6050 13 6 8.0164 -3.9119 -2.5450 14 1 8.3185 -4.3226 -1.5929 15 6 8.6698 -4.2988 -3.7063 16 7 8.3023 -3.7985 -4.8649 17 14 10.0716 -5.5307 -3.6230 18 1 9.5755 -6.8069 -3.0483 19 1 10.5982 -5.7744 -4.9900 20 1 11.1558 -4.9896 -2.7646 21 7 2.2741 -1.0600 0.0005 22 1 -0.3634 0.0003 1.0277 23 1 -0.3634 0.8898 -0.5140 24 1 -0.3634 -0.8902 -0.5136 25 1 1.9923 2.1597 -0.0004 26 1 4.4891 1.3484 0.0011 27 1 6.7782 -1.4944 0.8317 28 1 6.1578 0.1160 0.3967 29 1 5.5524 -0.7066 1.8545 30 1 4.4585 -2.0830 -2.0446 31 1 5.6187 -0.7490 -1.8379 32 1 8.7594 -4.0688 -5.6768 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330220756.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:13 Heat of formation + Delta-G solvation = -32.248891 kcal Electronic energy + Delta-G solvation = -16440.954594 eV Core-core repulsion = 13595.813303 eV Total energy + Delta-G solvation = -2845.141291 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.23899 -41.11804 -37.89289 -36.26565 -34.34044 -32.68298 -30.90093 -29.81060 -28.19148 -27.29260 -24.17929 -22.19246 -20.96094 -20.64957 -19.93315 -18.84554 -17.59237 -17.05718 -16.67546 -16.28595 -15.88001 -15.42930 -14.97796 -14.57377 -14.34059 -14.00780 -13.82647 -13.58323 -13.46445 -13.29395 -12.89887 -12.82822 -12.49315 -12.27874 -12.24118 -12.16710 -12.01784 -11.49466 -11.07295 -10.72280 -10.21847 -9.49544 -8.56621 -6.37202 0.95655 1.27200 1.31398 1.40644 1.51179 1.59587 1.90773 2.12602 2.77783 2.94833 3.39817 3.57743 3.92247 3.95274 4.03705 4.30339 4.42843 4.52675 4.59996 4.77221 4.79887 4.82809 4.86363 4.96714 5.07892 5.12297 5.21629 5.28670 5.79515 5.82581 6.13239 6.60193 6.83946 6.88223 7.70519 8.63808 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.051760 B = 0.004675 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.832995 B = 5987.347062 C = 6193.419948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.057 3.943 3 C -0.281 4.281 4 C 0.057 3.943 5 N -0.375 5.375 6 C 0.185 3.815 7 H 0.087 0.913 8 C -0.157 4.157 9 C -0.102 4.102 10 C 0.405 3.595 11 O -0.568 6.568 12 O -0.244 6.244 13 C -0.422 4.422 14 H 0.087 0.913 15 C -0.004 4.004 16 N -0.904 5.904 17 Si 1.018 2.982 18 H -0.262 1.262 19 H -0.261 1.261 20 H -0.259 1.259 21 N -0.347 5.347 22 H 0.087 0.913 23 H 0.099 0.901 24 H 0.065 0.935 25 H 0.174 0.826 26 H 0.202 0.798 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.343 10.580 7.938 16.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.109 4.109 3 C -0.310 4.310 4 C -0.089 4.089 5 N -0.157 5.157 6 C 0.083 3.917 7 H 0.105 0.895 8 C -0.215 4.215 9 C -0.141 4.141 10 C 0.252 3.748 11 O -0.466 6.466 12 O -0.153 6.153 13 C -0.498 4.498 14 H 0.105 0.895 15 C -0.205 4.205 16 N -0.541 5.541 17 Si 0.837 3.163 18 H -0.187 1.187 19 H -0.185 1.185 20 H -0.183 1.183 21 N -0.170 5.170 22 H 0.106 0.894 23 H 0.118 0.882 24 H 0.084 0.916 25 H 0.192 0.808 26 H 0.219 0.781 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.137 0.863 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.034 9.089 7.961 15.087 hybrid contribution 0.625 0.093 -0.188 0.659 sum -8.409 9.182 7.773 14.678 Atomic orbital electron populations 1.20284 0.84580 1.04046 1.03818 1.23073 0.98516 0.90877 0.98471 1.21757 0.91226 1.00615 1.17374 1.23150 1.01134 0.84573 1.00002 1.48789 1.04433 1.05364 1.57139 1.20725 0.82450 0.94324 0.94219 0.89517 1.22216 0.97333 1.02075 0.99887 1.21468 0.94769 0.99044 0.98811 1.23711 0.84990 0.83713 0.82335 1.90514 1.66106 1.56018 1.33996 1.83892 1.43962 1.54188 1.33209 1.21445 1.10660 1.21559 0.96121 0.89541 1.26573 1.01068 0.99669 0.93146 1.70077 1.41887 1.43139 0.99001 0.84673 0.76059 0.76932 0.78646 1.18696 1.18526 1.18300 1.77313 0.87492 1.24946 1.27268 0.89436 0.88196 0.91595 0.80824 0.78093 0.90274 0.89613 0.90451 0.88653 0.86281 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.19 10.45 71.23 0.74 -0.44 16 2 C 0.06 1.46 7.22 43.10 0.31 1.77 16 3 C -0.28 -6.15 10.74 21.99 0.24 -5.91 16 4 C 0.06 1.32 10.59 83.54 0.88 2.20 16 5 N -0.38 -11.24 3.53 -327.49 -1.15 -12.40 16 6 C 0.19 5.97 3.05 44.99 0.14 6.11 16 7 H 0.09 3.18 7.95 -2.39 -0.02 3.16 16 8 C -0.16 -4.32 8.58 71.98 0.62 -3.70 16 9 C -0.10 -3.73 5.61 29.85 0.17 -3.56 16 10 C 0.41 19.76 7.62 71.24 0.54 20.30 16 11 O -0.57 -29.23 13.20 20.77 0.27 -28.96 16 12 O -0.24 -14.29 9.75 14.90 0.15 -14.15 16 13 C -0.42 -25.36 9.65 67.94 0.66 -24.71 16 14 H 0.09 5.19 6.86 -2.91 -0.02 5.17 16 15 C 0.00 -0.24 5.49 84.87 0.47 0.23 16 16 N -0.90 -53.46 13.67 21.62 0.30 -53.17 16 17 Si 1.02 43.04 29.55 68.60 2.03 45.06 16 18 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 19 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 20 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 21 N -0.35 -11.36 12.58 -47.39 -0.60 -11.96 16 22 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 23 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 25 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 26 H 0.20 3.18 7.26 -2.91 -0.02 3.16 16 27 H 0.08 2.66 5.95 -2.38 -0.01 2.65 16 28 H 0.09 1.87 7.16 -2.39 -0.02 1.86 16 29 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 31 H 0.12 3.79 8.14 -2.39 -0.02 3.78 16 32 H 0.28 15.00 8.31 -92.70 -0.77 14.23 16 Total: -1.00 -73.79 282.98 6.87 -66.92 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 1.12 Total: 16.37 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: 4.76 Total: -7.72 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -1.46 Total: -77.52 kcal Atomic # 8 Polarization: -43.53 SS G_CDS: 0.42 Total: -43.11 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -73.79 6.87 -66.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330220756.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.670 kcal (2) G-P(sol) polarization free energy of solvation -73.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds