Wall clock time and date at job start Sun Mar 29 2020 22:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34754 * 126.44340 * 2 1 4 4 C 1.33964 * 107.75608 * 180.27022 * 3 2 1 5 5 N 1.30250 * 108.76067 * 359.73762 * 4 3 2 6 6 C 1.34327 * 126.44804 * 179.82856 * 2 1 3 7 7 C 1.50707 * 126.16055 * 359.97438 * 6 2 1 8 8 N 1.46494 * 109.47011 * 269.71800 * 7 6 2 9 9 C 1.34784 * 119.99635 * 180.02562 * 8 7 6 10 10 O 1.21279 * 119.99925 * 359.97438 * 9 8 7 11 11 C 1.50700 * 119.99961 * 180.02562 * 9 8 7 12 12 H 1.09004 * 109.46932 * 300.00223 * 11 9 8 13 13 C 1.53002 * 109.47318 * 59.99577 * 11 9 8 14 14 C 1.50697 * 109.47266 * 180.02562 * 11 9 8 15 15 H 1.08002 * 119.99865 * 359.97438 * 14 11 9 16 16 C 1.37876 * 119.99925 * 179.97438 * 14 11 9 17 17 N 1.31512 * 120.00389 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99821 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.47361 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.46957 * 119.99899 * 18 16 14 21 21 H 1.48497 * 109.47609 * 240.00146 * 18 16 14 22 22 H 1.09004 * 109.46272 * 270.17552 * 1 2 3 23 23 H 1.08999 * 109.47142 * 30.17109 * 1 2 3 24 24 H 1.08994 * 109.46959 * 150.18143 * 1 2 3 25 25 H 1.08001 * 125.61815 * 179.70693 * 4 3 2 26 26 H 1.09005 * 109.46877 * 149.71792 * 7 6 2 27 27 H 1.09002 * 109.46993 * 29.72139 * 7 6 2 28 28 H 0.96995 * 120.00292 * 0.27660 * 8 7 6 29 29 H 1.09002 * 109.46768 * 59.99928 * 13 11 9 30 30 H 1.08996 * 109.46948 * 180.02562 * 13 11 9 31 31 H 1.08996 * 109.46989 * 300.00583 * 13 11 9 32 32 H 0.96998 * 120.00138 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3075 1.0840 0.0000 4 6 3.5765 0.6548 -0.0060 5 7 3.5782 -0.6477 -0.0040 6 6 2.3050 -1.0805 0.0032 7 6 1.8546 -2.5187 0.0081 8 7 1.7156 -2.9822 1.3908 9 6 1.3213 -4.2465 1.6413 10 8 1.0811 -5.0001 0.7220 11 6 1.1777 -4.7232 3.0637 12 1 2.1379 -4.6410 3.5731 13 6 0.1409 -3.8622 3.7880 14 6 0.7286 -6.1617 3.0685 15 1 0.5632 -6.6789 2.1349 16 6 0.5289 -6.8175 4.2647 17 7 0.7298 -6.1876 5.4016 18 14 -0.0285 -8.6004 4.2707 19 1 -0.1826 -9.0756 2.8722 20 1 0.9846 -9.4334 4.9672 21 1 -1.3299 -8.7099 4.9774 22 1 -0.3632 0.0031 1.0278 23 1 -0.3633 0.8884 -0.5165 24 1 -0.3633 -0.8916 -0.5110 25 1 4.4536 1.2850 -0.0121 26 1 2.5927 -3.1323 -0.5084 27 1 0.8941 -2.6003 -0.5008 28 1 1.9039 -2.3782 2.1260 29 1 -0.8192 -3.9443 3.2786 30 1 0.0375 -4.2067 4.8169 31 1 0.4662 -2.8219 3.7845 32 1 0.5896 -6.6491 6.2431 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330771960.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:14 Heat of formation + Delta-G solvation = -23.540065 kcal Electronic energy + Delta-G solvation = -16597.009651 eV Core-core repulsion = 13752.246003 eV Total energy + Delta-G solvation = -2844.763648 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.48241 -38.75104 -35.56892 -33.84323 -33.68476 -32.36766 -30.46383 -27.91747 -25.75004 -25.09963 -22.57693 -22.15936 -20.83751 -19.38567 -17.40261 -16.84370 -16.22511 -15.88105 -15.33135 -15.00708 -14.43346 -14.23357 -13.84650 -13.25393 -12.98816 -12.81389 -12.67126 -12.33128 -12.03346 -11.44706 -11.35776 -11.00137 -10.69701 -10.64397 -10.59827 -10.22340 -9.93536 -9.00114 -8.92778 -8.52333 -8.43320 -8.28000 -6.00264 -4.03167 1.29078 2.47602 2.61026 3.34647 3.42067 3.50744 3.75911 3.95693 4.18512 4.51641 4.62679 4.71290 5.01238 5.25601 5.33157 5.36174 5.67698 5.74361 5.87804 5.98692 6.17125 6.30549 6.63959 6.84944 6.94621 7.06100 7.50792 7.59851 7.78200 8.02207 8.17495 8.47338 9.06484 9.25925 9.62378 11.07490 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.048671 B = 0.005036 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.158484 B = 5559.066882 C = 5629.598777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.025 4.025 3 O -0.206 6.206 4 C 0.162 3.838 5 N -0.472 5.472 6 C -0.028 4.028 7 C 0.203 3.797 8 N -0.741 5.741 9 C 0.521 3.479 10 O -0.546 6.546 11 C 0.029 3.971 12 H 0.053 0.947 13 C -0.131 4.131 14 C -0.498 4.498 15 H 0.075 0.925 16 C 0.057 3.943 17 N -0.897 5.897 18 Si 0.899 3.101 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.285 1.285 22 H 0.089 0.911 23 H 0.078 0.922 24 H 0.095 0.905 25 H 0.250 0.750 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.396 0.604 29 H 0.031 0.969 30 H 0.093 0.907 31 H 0.011 0.989 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.384 15.686 -7.909 17.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.079 4.079 3 O -0.093 6.093 4 C -0.064 4.064 5 N -0.200 5.200 6 C -0.148 4.148 7 C 0.079 3.921 8 N -0.396 5.396 9 C 0.311 3.689 10 O -0.422 6.422 11 C 0.008 3.992 12 H 0.070 0.930 13 C -0.189 4.189 14 C -0.537 4.537 15 H 0.093 0.907 16 C -0.143 4.143 17 N -0.537 5.537 18 Si 0.727 3.273 19 H -0.195 1.195 20 H -0.211 1.211 21 H -0.211 1.211 22 H 0.108 0.892 23 H 0.097 0.903 24 H 0.114 0.886 25 H 0.266 0.734 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.230 0.770 29 H 0.050 0.950 30 H 0.111 0.889 31 H 0.030 0.970 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.724 14.731 -8.411 17.051 hybrid contribution -0.446 0.003 0.449 0.633 sum 1.278 14.735 -7.962 16.797 Atomic orbital electron populations 1.20367 0.83637 1.04437 1.04394 1.23344 0.95083 0.84058 1.05427 1.84433 1.18475 1.36459 1.69927 1.28008 0.85602 0.91161 1.01669 1.70366 1.22844 1.10195 1.16592 1.21563 0.88162 0.97134 1.07907 1.19298 1.00704 0.85969 0.86178 1.46312 1.72260 1.14574 1.06462 1.21995 0.73507 0.79289 0.94091 1.90533 1.49587 1.54528 1.47517 1.18882 0.97746 0.96738 0.85837 0.92976 1.21735 0.97893 0.94714 1.04598 1.21194 1.44486 0.94607 0.93413 0.90681 1.24956 0.95493 0.98473 0.95403 1.69882 1.50082 1.36524 0.97216 0.86401 0.78087 0.84572 0.78213 1.19540 1.21079 1.21085 0.89232 0.90303 0.88611 0.73445 0.90438 0.90494 0.77019 0.94958 0.88858 0.97032 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.22 36.01 0.37 -0.27 16 2 C -0.02 -0.30 7.39 -35.69 -0.26 -0.56 16 3 O -0.21 -2.30 10.78 5.36 0.06 -2.24 16 4 C 0.16 1.66 13.23 52.09 0.69 2.35 16 5 N -0.47 -6.62 11.29 -11.18 -0.13 -6.75 16 6 C -0.03 -0.40 6.48 -82.81 -0.54 -0.93 16 7 C 0.20 3.25 6.01 -5.19 -0.03 3.21 16 8 N -0.74 -13.52 5.44 -61.47 -0.33 -13.85 16 9 C 0.52 12.07 7.15 -10.98 -0.08 12.00 16 10 O -0.55 -14.36 15.46 5.56 0.09 -14.27 16 11 C 0.03 0.73 2.64 -92.92 -0.25 0.49 16 12 H 0.05 1.37 8.14 -51.93 -0.42 0.95 16 13 C -0.13 -3.02 8.87 37.16 0.33 -2.69 16 14 C -0.50 -14.28 8.37 -34.44 -0.29 -14.57 16 15 H 0.08 2.27 6.75 -52.49 -0.35 1.92 16 16 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 17 N -0.90 -25.40 11.32 55.43 0.63 -24.77 16 18 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 19 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.10 0.83 7.16 -51.93 -0.37 0.46 16 25 H 0.25 1.21 8.06 -52.49 -0.42 0.79 16 26 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 27 H 0.08 1.16 7.16 -51.93 -0.37 0.78 16 28 H 0.40 6.63 7.87 -40.82 -0.32 6.31 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 31 H 0.01 0.21 7.56 -51.93 -0.39 -0.18 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 280.46 15.07 4.23 4.23 Total: -1.00 -33.49 280.46 -4.43 -37.92 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -3.80 Total: 2.28 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -0.15 Total: 0.54 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.17 Total: -45.38 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: 0.14 Total: -16.52 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.49 -4.43 -37.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330771960.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.382 kcal (2) G-P(sol) polarization free energy of solvation -33.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds