Wall clock time and date at job start Sun Mar 29 2020 22:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34754 * 126.44340 * 2 1 4 4 C 1.33964 * 107.75608 * 180.27022 * 3 2 1 5 5 N 1.30250 * 108.76067 * 359.73762 * 4 3 2 6 6 C 1.34327 * 126.44804 * 179.82856 * 2 1 3 7 7 C 1.50707 * 126.16055 * 359.97438 * 6 2 1 8 8 N 1.46494 * 109.47011 * 269.71800 * 7 6 2 9 9 C 1.34784 * 119.99635 * 180.02562 * 8 7 6 10 10 O 1.21279 * 119.99925 * 359.97438 * 9 8 7 11 11 C 1.50700 * 119.99961 * 180.02562 * 9 8 7 12 12 H 1.09004 * 109.46932 * 300.00223 * 11 9 8 13 13 C 1.53002 * 109.47318 * 59.99577 * 11 9 8 14 14 C 1.50697 * 109.47266 * 180.02562 * 11 9 8 15 15 H 1.08002 * 119.99865 * 359.97438 * 14 11 9 16 16 C 1.37876 * 119.99925 * 179.97438 * 14 11 9 17 17 N 1.31512 * 120.00389 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99821 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.47361 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.46957 * 119.99899 * 18 16 14 21 21 H 1.48497 * 109.47609 * 240.00146 * 18 16 14 22 22 H 1.09004 * 109.46272 * 270.17552 * 1 2 3 23 23 H 1.08999 * 109.47142 * 30.17109 * 1 2 3 24 24 H 1.08994 * 109.46959 * 150.18143 * 1 2 3 25 25 H 1.08001 * 125.61815 * 179.70693 * 4 3 2 26 26 H 1.09005 * 109.46877 * 149.71792 * 7 6 2 27 27 H 1.09002 * 109.46993 * 29.72139 * 7 6 2 28 28 H 0.96995 * 120.00292 * 0.27660 * 8 7 6 29 29 H 1.09002 * 109.46768 * 59.99928 * 13 11 9 30 30 H 1.08996 * 109.46948 * 180.02562 * 13 11 9 31 31 H 1.08996 * 109.46989 * 300.00583 * 13 11 9 32 32 H 0.96998 * 120.00138 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3075 1.0840 0.0000 4 6 3.5765 0.6548 -0.0060 5 7 3.5782 -0.6477 -0.0040 6 6 2.3050 -1.0805 0.0032 7 6 1.8546 -2.5187 0.0081 8 7 1.7156 -2.9822 1.3908 9 6 1.3213 -4.2465 1.6413 10 8 1.0811 -5.0001 0.7220 11 6 1.1777 -4.7232 3.0637 12 1 2.1379 -4.6410 3.5731 13 6 0.1409 -3.8622 3.7880 14 6 0.7286 -6.1617 3.0685 15 1 0.5632 -6.6789 2.1349 16 6 0.5289 -6.8175 4.2647 17 7 0.7298 -6.1876 5.4016 18 14 -0.0285 -8.6004 4.2707 19 1 -0.1826 -9.0756 2.8722 20 1 0.9846 -9.4334 4.9672 21 1 -1.3299 -8.7099 4.9774 22 1 -0.3632 0.0031 1.0278 23 1 -0.3633 0.8884 -0.5165 24 1 -0.3633 -0.8916 -0.5110 25 1 4.4536 1.2850 -0.0121 26 1 2.5927 -3.1323 -0.5084 27 1 0.8941 -2.6003 -0.5008 28 1 1.9039 -2.3782 2.1260 29 1 -0.8192 -3.9443 3.2786 30 1 0.0375 -4.2067 4.8169 31 1 0.4662 -2.8219 3.7845 32 1 0.5896 -6.6491 6.2431 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330771960.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:14 Heat of formation + Delta-G solvation = -49.865742 kcal Electronic energy + Delta-G solvation = -16598.151218 eV Core-core repulsion = 13752.246003 eV Total energy + Delta-G solvation = -2845.905215 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.37904 -40.54938 -36.78367 -35.76091 -35.07042 -33.46409 -32.38708 -29.05835 -27.20657 -26.79491 -24.25855 -23.21950 -21.85484 -21.15087 -18.59959 -18.24201 -17.76696 -17.44716 -16.76158 -16.45816 -16.18875 -15.63556 -15.05065 -14.66922 -14.42501 -14.04939 -13.87000 -13.66181 -13.30113 -13.13503 -12.96045 -12.67869 -12.57979 -12.34798 -12.18406 -12.01392 -11.52988 -11.02427 -10.64604 -10.38671 -10.04156 -9.71434 -8.14155 -6.24685 0.41266 1.40949 1.42710 1.49564 1.57099 1.80763 1.90904 2.41469 2.64561 3.15457 3.19403 3.70742 3.77278 4.21686 4.28088 4.53350 4.57024 4.68757 4.73188 4.76395 4.95633 5.00700 5.02649 5.15792 5.29737 5.48585 5.50448 5.75508 5.94977 6.21439 6.69088 6.71261 6.85867 7.39765 7.50859 8.92006 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.048671 B = 0.005036 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.158484 B = 5559.066882 C = 5629.598777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.012 4.012 3 O -0.206 6.206 4 C 0.184 3.816 5 N -0.518 5.518 6 C -0.058 4.058 7 C 0.208 3.792 8 N -0.720 5.720 9 C 0.525 3.475 10 O -0.584 6.584 11 C 0.024 3.976 12 H 0.037 0.963 13 C -0.118 4.118 14 C -0.527 4.527 15 H 0.050 0.950 16 C 0.019 3.981 17 N -0.912 5.912 18 Si 0.957 3.043 19 H -0.279 1.279 20 H -0.276 1.276 21 H -0.272 1.272 22 H 0.096 0.904 23 H 0.101 0.899 24 H 0.096 0.904 25 H 0.297 0.703 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.406 0.594 29 H 0.028 0.972 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.194 17.452 -7.887 19.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.067 4.067 3 O -0.092 6.092 4 C -0.043 4.043 5 N -0.246 5.246 6 C -0.176 4.176 7 C 0.084 3.916 8 N -0.373 5.373 9 C 0.314 3.686 10 O -0.463 6.463 11 C 0.003 3.997 12 H 0.055 0.945 13 C -0.176 4.176 14 C -0.566 4.566 15 H 0.068 0.932 16 C -0.180 4.180 17 N -0.552 5.552 18 Si 0.783 3.217 19 H -0.204 1.204 20 H -0.201 1.201 21 H -0.198 1.198 22 H 0.115 0.885 23 H 0.120 0.880 24 H 0.114 0.886 25 H 0.312 0.688 26 H 0.076 0.924 27 H 0.105 0.895 28 H 0.241 0.759 29 H 0.047 0.953 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.546 16.538 -8.375 18.602 hybrid contribution -0.312 -0.432 0.423 0.681 sum 1.234 16.106 -7.952 18.004 Atomic orbital electron populations 1.20531 0.81713 1.05635 1.05178 1.23713 0.96121 0.83517 1.03381 1.84481 1.18861 1.36053 1.69843 1.29058 0.86337 0.90526 0.98336 1.70312 1.23126 1.12301 1.18854 1.21230 0.89042 0.96325 1.10972 1.19249 1.00792 0.87379 0.84183 1.46026 1.70152 1.12959 1.08192 1.21546 0.73708 0.80515 0.92811 1.90510 1.51713 1.55992 1.48130 1.18821 0.97421 0.96005 0.87500 0.94539 1.21539 0.97115 0.96372 1.02539 1.21317 1.45863 0.96622 0.92763 0.93193 1.25614 0.95322 1.02097 0.95007 1.69961 1.49906 1.37781 0.97531 0.85515 0.78276 0.80152 0.77766 1.20367 1.20137 1.19783 0.88507 0.88005 0.88565 0.68794 0.92364 0.89507 0.75888 0.95261 0.91128 0.93239 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.13 10.22 71.24 0.73 -0.40 16 2 C -0.01 -0.27 7.39 24.79 0.18 -0.08 16 3 O -0.21 -3.96 10.78 -3.73 -0.04 -4.00 16 4 C 0.18 3.21 13.23 130.48 1.73 4.94 16 5 N -0.52 -13.76 11.29 -304.07 -3.43 -17.20 16 6 C -0.06 -1.55 6.48 41.26 0.27 -1.28 16 7 C 0.21 6.61 6.01 85.64 0.51 7.13 16 8 N -0.72 -26.03 5.44 -466.77 -2.54 -28.57 16 9 C 0.52 24.65 7.15 87.66 0.63 25.28 16 10 O -0.58 -31.56 15.46 -3.03 -0.05 -31.61 16 11 C 0.02 1.21 2.64 -12.29 -0.03 1.18 16 12 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 13 C -0.12 -5.35 8.87 71.98 0.64 -4.71 16 14 C -0.53 -30.89 8.37 25.60 0.21 -30.67 16 15 H 0.05 3.13 6.75 -2.91 -0.02 3.11 16 16 C 0.02 1.05 5.30 84.65 0.45 1.49 16 17 N -0.91 -51.63 11.32 21.45 0.24 -51.39 16 18 Si 0.96 45.22 29.54 68.60 2.03 47.25 16 19 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 22 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 23 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.10 1.47 7.16 -2.39 -0.02 1.45 16 25 H 0.30 1.61 8.06 -2.91 -0.02 1.59 16 26 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 27 H 0.09 2.58 7.16 -2.39 -0.02 2.56 16 28 H 0.41 13.14 7.87 -92.71 -0.73 12.41 16 29 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 3.56 6.07 -2.39 -0.01 3.55 16 31 H 0.05 1.82 7.56 -2.39 -0.02 1.80 16 32 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -73.22 280.46 1.94 -71.29 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.41 Total: 11.37 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 5.32 Total: 2.87 kcal Atomic # 7 Polarization: -91.43 SS G_CDS: -5.73 Total: -97.16 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -0.09 Total: -35.61 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -73.22 1.94 -71.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330771960.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.419 kcal (2) G-P(sol) polarization free energy of solvation -73.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds