Wall clock time and date at job start Sun Mar 29 2020 22:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35444 * 126.78078 * 2 1 4 4 C 1.41385 * 103.98584 * 180.13620 * 3 2 1 5 5 C 1.50696 * 126.79826 * 179.89030 * 4 3 2 6 6 C 1.52998 * 109.46969 * 124.71497 * 5 4 3 7 7 C 1.50706 * 109.47348 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99503 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00081 * 179.72561 * 7 6 5 10 10 C 1.46506 * 119.99968 * 180.02562 * 9 7 6 11 11 C 1.50690 * 109.47072 * 179.97438 * 10 9 7 12 12 H 1.08002 * 120.00210 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99820 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00036 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 120.00010 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47177 * 59.99528 * 15 13 11 17 17 H 1.48496 * 109.46992 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46935 * 299.99881 * 15 13 11 19 19 N 1.30177 * 106.39418 * 359.63009 * 4 3 2 20 20 O 1.20919 * 111.60380 * 0.23643 * 19 4 3 21 21 H 1.09000 * 109.47590 * 180.29586 * 1 2 3 22 22 H 1.09003 * 109.47327 * 300.30134 * 1 2 3 23 23 H 1.09006 * 109.46903 * 60.29870 * 1 2 3 24 24 H 1.07997 * 128.00991 * 0.02562 * 3 2 1 25 25 H 1.09000 * 109.47664 * 4.71425 * 5 4 3 26 26 H 1.09002 * 109.46824 * 244.70896 * 5 4 3 27 27 H 1.09001 * 109.47671 * 59.99812 * 6 5 4 28 28 H 1.08998 * 109.47454 * 299.99809 * 6 5 4 29 29 H 0.96998 * 120.00525 * 359.97438 * 9 7 6 30 30 H 1.09004 * 109.46587 * 299.99661 * 10 9 7 31 31 H 1.08998 * 109.47213 * 59.99069 * 10 9 7 32 32 H 0.97005 * 119.99861 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0848 0.0000 4 6 3.6214 0.5370 -0.0033 5 6 4.9211 1.2998 -0.0070 6 6 5.7798 0.8498 1.1767 7 6 7.0799 1.6121 1.1727 8 8 7.2982 2.4340 0.3079 9 7 7.9977 1.3840 2.1329 10 6 9.2613 2.1255 2.1293 11 6 10.1040 1.6875 3.2992 12 1 9.7351 0.9326 3.9779 13 6 11.3460 2.2504 3.5033 14 7 11.7953 3.1692 2.6766 15 14 12.3910 1.7069 4.9532 16 1 12.6697 0.2523 4.8448 17 1 13.6722 2.4577 4.9489 18 1 11.6619 1.9783 6.2181 19 7 3.4763 -0.7566 0.0032 20 8 2.3094 -1.0737 0.0052 21 1 -0.3634 -1.0276 0.0053 22 1 -0.3634 0.5185 0.8873 23 1 -0.3633 0.5092 -0.8927 24 1 2.0346 2.1270 0.0004 25 1 4.7164 2.3670 0.0777 26 1 5.4541 1.1047 -0.9375 27 1 5.9846 -0.2175 1.0921 28 1 5.2468 1.0448 2.1072 29 1 7.8214 0.7296 2.8268 30 1 9.7965 1.9266 1.2008 31 1 9.0563 3.1931 2.2090 32 1 12.6690 3.5655 2.8204 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335278118.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:45 Heat of formation + Delta-G solvation = 1.618557 kcal Electronic energy + Delta-G solvation = -15809.295560 eV Core-core repulsion = 12965.622872 eV Total energy + Delta-G solvation = -2843.672688 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.00515 -38.88476 -35.33647 -34.16266 -33.68248 -32.33878 -31.33137 -28.03061 -27.50421 -25.04481 -23.13288 -22.30460 -19.96078 -19.45712 -17.75864 -17.42300 -16.92379 -15.67831 -15.27276 -15.14521 -14.54978 -14.25307 -13.98121 -13.59655 -13.28458 -13.19856 -12.73915 -12.32418 -12.13185 -11.85968 -11.85365 -11.38141 -10.99951 -10.88476 -10.81265 -10.31159 -10.06791 -9.45585 -9.40756 -9.03412 -8.72755 -7.87732 -6.16048 -4.23072 1.34503 2.14808 2.98582 3.25930 3.30564 3.32228 3.37842 3.97400 4.19362 4.31830 4.46776 4.86757 4.96101 5.04722 5.14534 5.16656 5.19866 5.30769 5.43817 5.51172 5.67486 5.83040 5.92611 6.07229 6.20349 7.30968 7.44218 7.52370 7.66911 7.97732 8.21284 8.63200 8.77932 9.10189 9.43530 10.94164 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.063961 B = 0.003587 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.659306 B = 7803.284044 C = 8051.258669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.040 4.040 3 C -0.231 4.231 4 C 0.027 3.973 5 C -0.025 4.025 6 C -0.136 4.136 7 C 0.499 3.501 8 O -0.559 6.559 9 N -0.712 5.712 10 C 0.249 3.751 11 C -0.544 4.544 12 H 0.062 0.938 13 C 0.064 3.936 14 N -0.886 5.886 15 Si 0.904 3.096 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.275 1.275 19 N -0.364 5.364 20 O 0.096 5.904 21 H 0.081 0.919 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.171 0.829 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.391 0.609 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.636 -5.766 -3.198 22.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.103 4.103 3 C -0.253 4.253 4 C -0.132 4.132 5 C -0.064 4.064 6 C -0.177 4.177 7 C 0.284 3.716 8 O -0.439 6.439 9 N -0.360 5.360 10 C 0.128 3.872 11 C -0.583 4.583 12 H 0.081 0.919 13 C -0.140 4.140 14 N -0.523 5.523 15 Si 0.731 3.269 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.201 1.201 19 N -0.069 5.069 20 O 0.030 5.970 21 H 0.100 0.900 22 H 0.108 0.892 23 H 0.107 0.893 24 H 0.188 0.812 25 H 0.112 0.888 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.106 0.894 29 H 0.224 0.776 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.418 -6.074 -3.841 21.646 hybrid contribution 0.256 0.249 1.138 1.192 sum -20.162 -5.825 -2.703 21.160 Atomic orbital electron populations 1.20315 0.84176 1.04537 1.04006 1.24496 0.96349 0.86404 1.03080 1.22459 0.91417 1.01057 1.10354 1.23728 0.97593 0.89950 1.01884 1.19748 0.88084 0.98815 0.99741 1.21613 0.94760 1.01632 0.99689 1.20396 0.85355 0.83549 0.82345 1.90655 1.79584 1.35839 1.37796 1.46476 1.19437 1.42258 1.27862 1.19106 0.78646 0.91929 0.97495 1.21202 1.02005 1.23732 1.11338 0.91943 1.24956 0.97530 0.94733 0.96798 1.69967 1.19383 1.26364 1.36627 0.86466 0.79380 0.78763 0.82252 1.20052 1.21049 1.20055 1.73844 0.96614 1.16495 1.19944 1.84831 1.11399 1.33175 1.67599 0.89999 0.89247 0.89290 0.81164 0.88770 0.89029 0.88960 0.89366 0.77639 0.95525 0.95518 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.45 36.01 0.38 0.04 16 2 C -0.04 -0.37 7.49 -35.31 -0.26 -0.63 16 3 C -0.23 -2.38 11.05 -39.38 -0.44 -2.82 16 4 C 0.03 0.35 6.59 -82.10 -0.54 -0.19 16 5 C -0.03 -0.36 5.10 -27.89 -0.14 -0.50 16 6 C -0.14 -2.04 5.67 -27.88 -0.16 -2.20 16 7 C 0.50 10.08 7.83 -10.98 -0.09 10.00 16 8 O -0.56 -13.41 15.98 5.56 0.09 -13.32 16 9 N -0.71 -15.36 5.55 -61.47 -0.34 -15.71 16 10 C 0.25 6.72 5.43 -5.20 -0.03 6.69 16 11 C -0.54 -15.01 9.28 -34.44 -0.32 -15.33 16 12 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 13 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 14 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 15 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 N -0.36 -5.14 12.06 33.42 0.40 -4.74 16 20 O 0.10 1.16 11.20 17.17 0.19 1.36 16 21 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 22 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 23 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.17 1.33 8.06 -52.49 -0.42 0.90 16 25 H 0.09 1.27 8.09 -51.93 -0.42 0.85 16 26 H 0.09 1.37 8.10 -51.93 -0.42 0.95 16 27 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 28 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.39 7.28 8.32 -40.82 -0.34 6.94 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 288.74 15.07 4.35 4.35 Total: -1.00 -33.49 288.74 -5.38 -38.88 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -4.10 Total: 2.03 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -1.70 Total: -3.25 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.80 Total: -46.09 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.28 Total: -11.97 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -33.49 -5.38 -38.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335278118.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.496 kcal (2) G-P(sol) polarization free energy of solvation -33.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds