Wall clock time and date at job start Sun Mar 29 2020 22:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35444 * 126.78078 * 2 1 4 4 C 1.41385 * 103.98584 * 180.13620 * 3 2 1 5 5 C 1.50696 * 126.79826 * 179.89030 * 4 3 2 6 6 C 1.52998 * 109.46969 * 124.71497 * 5 4 3 7 7 C 1.50706 * 109.47348 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99503 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00081 * 179.72561 * 7 6 5 10 10 C 1.46506 * 119.99968 * 180.02562 * 9 7 6 11 11 C 1.50690 * 109.47072 * 179.97438 * 10 9 7 12 12 H 1.08002 * 120.00210 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99820 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00036 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 120.00010 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47177 * 59.99528 * 15 13 11 17 17 H 1.48496 * 109.46992 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46935 * 299.99881 * 15 13 11 19 19 N 1.30177 * 106.39418 * 359.63009 * 4 3 2 20 20 O 1.20919 * 111.60380 * 0.23643 * 19 4 3 21 21 H 1.09000 * 109.47590 * 180.29586 * 1 2 3 22 22 H 1.09003 * 109.47327 * 300.30134 * 1 2 3 23 23 H 1.09006 * 109.46903 * 60.29870 * 1 2 3 24 24 H 1.07997 * 128.00991 * 0.02562 * 3 2 1 25 25 H 1.09000 * 109.47664 * 4.71425 * 5 4 3 26 26 H 1.09002 * 109.46824 * 244.70896 * 5 4 3 27 27 H 1.09001 * 109.47671 * 59.99812 * 6 5 4 28 28 H 1.08998 * 109.47454 * 299.99809 * 6 5 4 29 29 H 0.96998 * 120.00525 * 359.97438 * 9 7 6 30 30 H 1.09004 * 109.46587 * 299.99661 * 10 9 7 31 31 H 1.08998 * 109.47213 * 59.99069 * 10 9 7 32 32 H 0.97005 * 119.99861 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0848 0.0000 4 6 3.6214 0.5370 -0.0033 5 6 4.9211 1.2998 -0.0070 6 6 5.7798 0.8498 1.1767 7 6 7.0799 1.6121 1.1727 8 8 7.2982 2.4340 0.3079 9 7 7.9977 1.3840 2.1329 10 6 9.2613 2.1255 2.1293 11 6 10.1040 1.6875 3.2992 12 1 9.7351 0.9326 3.9779 13 6 11.3460 2.2504 3.5033 14 7 11.7953 3.1692 2.6766 15 14 12.3910 1.7069 4.9532 16 1 12.6697 0.2523 4.8448 17 1 13.6722 2.4577 4.9489 18 1 11.6619 1.9783 6.2181 19 7 3.4763 -0.7566 0.0032 20 8 2.3094 -1.0737 0.0052 21 1 -0.3634 -1.0276 0.0053 22 1 -0.3634 0.5185 0.8873 23 1 -0.3633 0.5092 -0.8927 24 1 2.0346 2.1270 0.0004 25 1 4.7164 2.3670 0.0777 26 1 5.4541 1.1047 -0.9375 27 1 5.9846 -0.2175 1.0921 28 1 5.2468 1.0448 2.1072 29 1 7.8214 0.7296 2.8268 30 1 9.7965 1.9266 1.2008 31 1 9.0563 3.1931 2.2090 32 1 12.6690 3.5655 2.8204 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335278118.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:44 Heat of formation + Delta-G solvation = -22.148991 kcal Electronic energy + Delta-G solvation = -15810.326199 eV Core-core repulsion = 12965.622872 eV Total energy + Delta-G solvation = -2844.703326 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.89949 -40.61111 -36.51866 -36.02220 -34.42533 -34.34154 -32.52609 -29.49357 -28.60354 -26.49893 -24.36023 -23.91132 -21.48202 -20.60767 -19.04746 -18.58109 -18.17035 -17.45090 -17.05984 -16.73223 -16.05871 -15.47909 -15.04820 -14.68724 -14.45083 -14.05232 -13.94055 -13.79327 -13.58531 -13.32320 -13.08186 -12.91733 -12.70577 -12.51246 -12.25241 -11.85517 -11.53213 -11.07086 -10.81244 -10.76066 -10.20909 -9.86346 -8.30862 -6.47842 0.56308 1.25052 1.41923 1.46105 1.54395 1.70897 2.27582 2.32163 2.55025 3.03757 3.21147 3.53577 3.83019 4.09127 4.11091 4.20607 4.43727 4.54108 4.58372 4.79066 4.85035 4.93579 4.98522 5.09349 5.13014 5.21981 5.30988 5.46088 5.66041 5.82752 6.62625 6.85611 7.21060 7.35954 7.43910 8.81189 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.063961 B = 0.003587 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.659306 B = 7803.284044 C = 8051.258669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.027 4.027 3 C -0.241 4.241 4 C 0.012 3.988 5 C -0.021 4.021 6 C -0.117 4.117 7 C 0.497 3.503 8 O -0.600 6.600 9 N -0.709 5.709 10 C 0.265 3.735 11 C -0.560 4.560 12 H 0.083 0.917 13 C 0.004 3.996 14 N -0.931 5.931 15 Si 0.986 3.014 16 H -0.263 1.263 17 H -0.284 1.284 18 H -0.261 1.261 19 N -0.396 5.396 20 O 0.087 5.913 21 H 0.092 0.908 22 H 0.108 0.892 23 H 0.108 0.892 24 H 0.194 0.806 25 H 0.097 0.903 26 H 0.074 0.926 27 H 0.103 0.897 28 H 0.115 0.885 29 H 0.408 0.592 30 H -0.013 1.013 31 H -0.010 1.010 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.527 -6.888 -1.667 24.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.091 4.091 3 C -0.263 4.263 4 C -0.146 4.146 5 C -0.059 4.059 6 C -0.157 4.157 7 C 0.285 3.715 8 O -0.482 6.482 9 N -0.358 5.358 10 C 0.142 3.858 11 C -0.597 4.597 12 H 0.101 0.899 13 C -0.196 4.196 14 N -0.569 5.569 15 Si 0.808 3.192 16 H -0.188 1.188 17 H -0.209 1.209 18 H -0.186 1.186 19 N -0.102 5.102 20 O 0.022 5.978 21 H 0.111 0.889 22 H 0.127 0.873 23 H 0.126 0.874 24 H 0.211 0.789 25 H 0.116 0.884 26 H 0.093 0.907 27 H 0.121 0.879 28 H 0.133 0.867 29 H 0.244 0.756 30 H 0.005 0.995 31 H 0.008 0.992 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.354 -7.232 -2.299 23.607 hybrid contribution 0.737 0.616 0.582 1.123 sum -21.618 -6.616 -1.717 22.673 Atomic orbital electron populations 1.20584 0.80681 1.05908 1.05745 1.25312 0.98034 0.85145 1.00562 1.22764 0.90192 1.02556 1.10740 1.23677 0.98025 0.90052 1.02825 1.19615 0.88570 0.99274 0.98457 1.21521 0.91657 1.01054 1.01517 1.21323 0.86452 0.82913 0.80821 1.90635 1.80600 1.37768 1.39210 1.46244 1.18110 1.42361 1.29101 1.18563 0.80689 0.90566 0.95968 1.21599 1.02401 1.24196 1.11547 0.89913 1.26078 0.99055 0.94458 0.99988 1.70129 1.20035 1.27804 1.38936 0.85198 0.77086 0.78644 0.78239 1.18766 1.20947 1.18565 1.73834 0.97867 1.17092 1.21404 1.84784 1.11170 1.34248 1.67596 0.88877 0.87345 0.87409 0.78866 0.88426 0.90713 0.87854 0.86689 0.75611 0.99475 0.99186 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.45 71.24 0.74 0.34 16 2 C -0.03 -0.43 7.49 25.04 0.19 -0.24 16 3 C -0.24 -4.46 11.05 22.40 0.25 -4.21 16 4 C 0.01 0.30 6.59 43.58 0.29 0.59 16 5 C -0.02 -0.57 5.10 29.85 0.15 -0.42 16 6 C -0.12 -3.39 5.67 29.85 0.17 -3.22 16 7 C 0.50 20.35 7.83 87.66 0.69 21.03 16 8 O -0.60 -29.83 15.98 -3.04 -0.05 -29.88 16 9 N -0.71 -30.88 5.55 -466.79 -2.59 -33.47 16 10 C 0.26 14.85 5.43 85.63 0.46 15.31 16 11 C -0.56 -31.01 9.28 25.60 0.24 -30.77 16 12 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 13 C 0.00 0.22 5.46 84.66 0.46 0.68 16 14 N -0.93 -56.73 13.29 21.45 0.28 -56.45 16 15 Si 0.99 42.76 29.54 68.60 2.03 44.79 16 16 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 17 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 18 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 19 N -0.40 -10.83 12.06 -49.56 -0.60 -11.43 16 20 O 0.09 1.99 11.20 71.60 0.80 2.79 16 21 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 22 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 23 H 0.11 0.28 8.14 -2.38 -0.02 0.26 16 24 H 0.19 2.49 8.06 -2.91 -0.02 2.46 16 25 H 0.10 2.60 8.09 -2.39 -0.02 2.58 16 26 H 0.07 2.30 8.10 -2.39 -0.02 2.28 16 27 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 28 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.41 14.83 8.32 -92.71 -0.77 14.06 16 30 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 31 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 32 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 Total: -1.00 -75.00 288.74 3.87 -71.13 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.36 Total: 13.44 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 3.64 Total: -0.92 kcal Atomic # 7 Polarization: -98.44 SS G_CDS: -2.90 Total: -101.35 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: 0.75 Total: -27.08 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -75.00 3.87 -71.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335278118.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.977 kcal (2) G-P(sol) polarization free energy of solvation -75.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds