Wall clock time and date at job start Sun Mar 29 2020 22:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52999 * 109.54252 * 123.84019 * 3 2 1 5 5 N 1.46499 * 109.47307 * 300.00533 * 4 3 2 6 6 C 1.34773 * 120.00254 * 180.02562 * 5 4 3 7 7 O 1.21688 * 119.99913 * 359.97438 * 6 5 4 8 8 C 1.46372 * 120.00421 * 179.97438 * 6 5 4 9 9 H 1.07996 * 119.99686 * 359.97438 * 8 6 5 10 10 C 1.40047 * 120.00382 * 179.97438 * 8 6 5 11 11 N 1.30679 * 119.99748 * 0.02562 * 10 8 6 12 12 Si 1.86799 * 120.00137 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46968 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46608 * 120.00116 * 12 10 8 15 15 H 1.48497 * 109.47568 * 239.99876 * 12 10 8 16 16 C 1.53174 * 109.54556 * 3.66705 * 3 2 1 17 17 C 1.53290 * 109.06075 * 297.02715 * 16 3 2 18 18 O 1.42901 * 109.46203 * 302.44341 * 17 16 3 19 19 C 1.42903 * 114.09356 * 61.15883 * 18 17 16 20 20 C 1.53091 * 109.41633 * 298.84001 * 19 18 17 21 21 H 1.09004 * 109.47122 * 59.99813 * 4 3 2 22 22 H 1.08994 * 109.47461 * 179.97438 * 4 3 2 23 23 H 0.97002 * 119.99940 * 359.97438 * 5 4 3 24 24 H 0.96999 * 119.99879 * 179.97438 * 11 10 8 25 25 H 1.09002 * 109.52621 * 57.01539 * 16 3 2 26 26 H 1.08991 * 109.52723 * 177.20597 * 16 3 2 27 27 H 1.09002 * 109.45261 * 182.44496 * 17 16 3 28 28 H 1.09003 * 109.46577 * 62.44930 * 17 16 3 29 29 H 1.09000 * 109.47917 * 178.85973 * 19 18 17 30 30 H 1.09000 * 109.49157 * 58.82974 * 19 18 17 31 31 H 1.08994 * 109.52621 * 297.70472 * 20 19 18 32 32 H 1.09002 * 109.57258 * 177.54376 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1194 0.8038 -1.1976 5 7 2.6321 0.1951 -2.4378 6 6 2.9595 0.7361 -3.6280 7 8 3.6594 1.7305 -3.6724 8 6 2.4731 0.1276 -4.8672 9 1 1.8522 -0.7551 -4.8278 10 6 2.8128 0.6902 -6.1040 11 7 3.5645 1.7580 -6.1516 12 14 2.1927 -0.0869 -7.6854 13 1 1.3673 -1.2780 -7.3612 14 1 1.3682 0.8982 -8.4307 15 1 3.3489 -0.4980 -8.5217 16 6 3.1211 -1.4396 -0.0923 17 6 2.6685 -2.2130 1.1514 18 8 3.1524 -1.5545 2.3237 19 6 2.6676 -0.2200 2.4854 20 6 3.1201 0.6332 1.2976 21 1 2.7562 1.8293 -1.1292 22 1 4.2093 0.8040 -1.1963 23 1 2.0745 -0.5978 -2.4025 24 1 3.8001 2.1474 -7.0082 25 1 2.7161 -1.9141 -0.9862 26 1 4.2098 -1.4360 -0.1423 27 1 3.0668 -3.2269 1.1133 28 1 1.5794 -2.2511 1.1791 29 1 3.0652 0.2018 3.4084 30 1 1.5786 -0.2316 2.5306 31 1 4.2089 0.6788 1.2757 32 1 2.7153 1.6405 1.3963 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339341649.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:02 Heat of formation + Delta-G solvation = -67.724057 kcal Electronic energy + Delta-G solvation = -16900.076458 eV Core-core repulsion = 14053.396848 eV Total energy + Delta-G solvation = -2846.679610 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.20456 -37.47504 -36.36469 -34.66343 -32.65571 -31.89834 -31.26379 -27.72682 -25.89542 -23.86830 -23.03345 -21.83051 -19.73353 -17.52258 -16.99550 -16.17414 -15.85493 -15.37903 -14.94751 -14.87560 -14.20768 -14.03857 -13.70069 -13.50270 -12.98869 -12.53778 -12.41460 -12.34478 -11.94764 -11.64093 -11.46561 -11.35751 -11.20391 -10.97791 -10.69039 -10.53185 -10.47731 -10.21966 -9.65217 -8.89528 -7.69011 -7.63456 -6.23223 -4.68520 2.82341 2.86910 3.11085 3.19595 3.23945 3.69881 3.84706 4.06913 4.42007 4.54095 4.59627 4.66562 4.76326 4.97913 5.07776 5.25585 5.42008 5.49183 5.51701 5.62423 5.71663 5.82289 5.92265 6.01460 6.23172 6.27049 7.00082 7.39913 7.62764 7.81434 7.97628 8.26468 8.98752 9.42206 10.54211 10.72306 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.042169 B = 0.005656 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.832820 B = 4949.302925 C = 5088.219781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C 0.218 3.782 3 C 0.025 3.975 4 C 0.147 3.853 5 N -0.769 5.769 6 C 0.555 3.445 7 O -0.579 6.579 8 C -0.544 4.544 9 H 0.067 0.933 10 C 0.088 3.912 11 N -0.767 5.767 12 Si 0.907 3.093 13 H -0.264 1.264 14 H -0.276 1.276 15 H -0.275 1.275 16 C -0.142 4.142 17 C 0.057 3.943 18 O -0.379 6.379 19 C 0.058 3.942 20 C -0.141 4.141 21 H 0.058 0.942 22 H 0.072 0.928 23 H 0.379 0.621 24 H 0.268 0.732 25 H 0.088 0.912 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.047 0.953 29 H 0.101 0.899 30 H 0.047 0.953 31 H 0.098 0.902 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.340 -6.126 13.303 14.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.106 5.106 2 C -0.100 4.100 3 C 0.021 3.979 4 C 0.020 3.980 5 N -0.425 5.425 6 C 0.360 3.640 7 O -0.461 6.461 8 C -0.581 4.581 9 H 0.085 0.915 10 C -0.132 4.132 11 N -0.396 5.396 12 Si 0.732 3.268 13 H -0.188 1.188 14 H -0.202 1.202 15 H -0.201 1.201 16 C -0.181 4.181 17 C -0.020 4.020 18 O -0.297 6.297 19 C -0.019 4.019 20 C -0.181 4.181 21 H 0.077 0.923 22 H 0.091 0.909 23 H 0.211 0.789 24 H 0.079 0.921 25 H 0.107 0.893 26 H 0.116 0.884 27 H 0.119 0.881 28 H 0.066 0.934 29 H 0.119 0.881 30 H 0.066 0.934 31 H 0.117 0.883 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.651 -5.316 13.283 14.322 hybrid contribution -0.431 -0.534 -1.077 1.277 sum -1.081 -5.849 12.206 13.578 Atomic orbital electron populations 1.81172 1.12639 1.08218 1.08547 1.28932 0.94790 0.93313 0.92989 1.18745 0.81858 0.98748 0.98507 1.20941 0.99163 0.95559 0.82302 1.46218 1.58046 1.33285 1.04995 1.18206 0.80288 0.83659 0.81864 1.90607 1.41551 1.27521 1.86456 1.20901 1.33952 1.13768 0.89508 0.91453 1.25700 0.93335 0.93957 1.00204 1.70025 1.26892 1.16619 1.26028 0.86320 0.79117 0.79793 0.81571 1.18791 1.20150 1.20076 1.22345 1.03543 0.92632 0.99559 1.22704 0.98294 0.96576 0.84411 1.87937 1.71676 1.26812 1.43303 1.22622 0.98317 0.82715 0.98204 1.22262 1.03499 1.00040 0.92255 0.92336 0.90946 0.78948 0.92103 0.89349 0.88387 0.88061 0.93433 0.88103 0.93437 0.88326 0.89585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.46 18.54 42.15 0.78 -6.68 16 2 C 0.22 3.30 10.95 -20.76 -0.23 3.08 16 3 C 0.03 0.33 0.50 -157.11 -0.08 0.25 16 4 C 0.15 2.52 4.55 -4.04 -0.02 2.50 16 5 N -0.77 -16.30 5.02 -61.72 -0.31 -16.61 16 6 C 0.56 15.38 7.75 -12.99 -0.10 15.28 16 7 O -0.58 -18.23 15.02 5.20 0.08 -18.15 16 8 C -0.54 -15.20 9.54 -35.63 -0.34 -15.54 16 9 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 10 C 0.09 2.43 5.50 -17.36 -0.10 2.34 16 11 N -0.77 -22.76 11.83 55.55 0.66 -22.10 16 12 Si 0.91 20.04 29.56 -169.99 -5.02 15.02 16 13 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 14 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 15 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 16 C -0.14 -1.61 4.69 -26.49 -0.12 -1.73 16 17 C 0.06 0.59 6.62 37.31 0.25 0.83 16 18 O -0.38 -4.22 10.77 -35.23 -0.38 -4.60 16 19 C 0.06 0.56 6.61 37.20 0.25 0.81 16 20 C -0.14 -1.42 4.90 -26.59 -0.13 -1.55 16 21 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 22 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 23 H 0.38 7.28 6.90 -40.82 -0.28 7.00 16 24 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 25 H 0.09 1.04 6.98 -51.93 -0.36 0.68 16 26 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.52 7.38 -51.93 -0.38 0.14 16 29 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.49 7.38 -51.93 -0.38 0.11 16 31 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 275.43 15.07 4.15 4.15 Total: -1.00 -34.70 275.43 -4.58 -39.28 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -3.92 Total: 3.43 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -0.62 Total: 6.25 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 1.13 Total: -45.39 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.30 Total: -22.75 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -34.70 -4.58 -39.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339341649.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.445 kcal (2) G-P(sol) polarization free energy of solvation -34.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds