Wall clock time and date at job start Sun Mar 29 2020 22:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52999 * 109.54252 * 123.84019 * 3 2 1 5 5 N 1.46499 * 109.47307 * 300.00533 * 4 3 2 6 6 C 1.34773 * 120.00254 * 180.02562 * 5 4 3 7 7 O 1.21688 * 119.99913 * 359.97438 * 6 5 4 8 8 C 1.46372 * 120.00421 * 179.97438 * 6 5 4 9 9 H 1.07996 * 119.99686 * 359.97438 * 8 6 5 10 10 C 1.40047 * 120.00382 * 179.97438 * 8 6 5 11 11 N 1.30679 * 119.99748 * 0.02562 * 10 8 6 12 12 Si 1.86799 * 120.00137 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46968 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46608 * 120.00116 * 12 10 8 15 15 H 1.48497 * 109.47568 * 239.99876 * 12 10 8 16 16 C 1.53174 * 109.54556 * 3.66705 * 3 2 1 17 17 C 1.53290 * 109.06075 * 297.02715 * 16 3 2 18 18 O 1.42901 * 109.46203 * 302.44341 * 17 16 3 19 19 C 1.42903 * 114.09356 * 61.15883 * 18 17 16 20 20 C 1.53091 * 109.41633 * 298.84001 * 19 18 17 21 21 H 1.09004 * 109.47122 * 59.99813 * 4 3 2 22 22 H 1.08994 * 109.47461 * 179.97438 * 4 3 2 23 23 H 0.97002 * 119.99940 * 359.97438 * 5 4 3 24 24 H 0.96999 * 119.99879 * 179.97438 * 11 10 8 25 25 H 1.09002 * 109.52621 * 57.01539 * 16 3 2 26 26 H 1.08991 * 109.52723 * 177.20597 * 16 3 2 27 27 H 1.09002 * 109.45261 * 182.44496 * 17 16 3 28 28 H 1.09003 * 109.46577 * 62.44930 * 17 16 3 29 29 H 1.09000 * 109.47917 * 178.85973 * 19 18 17 30 30 H 1.09000 * 109.49157 * 58.82974 * 19 18 17 31 31 H 1.08994 * 109.52621 * 297.70472 * 20 19 18 32 32 H 1.09002 * 109.57258 * 177.54376 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1194 0.8038 -1.1976 5 7 2.6321 0.1951 -2.4378 6 6 2.9595 0.7361 -3.6280 7 8 3.6594 1.7305 -3.6724 8 6 2.4731 0.1276 -4.8672 9 1 1.8522 -0.7551 -4.8278 10 6 2.8128 0.6902 -6.1040 11 7 3.5645 1.7580 -6.1516 12 14 2.1927 -0.0869 -7.6854 13 1 1.3673 -1.2780 -7.3612 14 1 1.3682 0.8982 -8.4307 15 1 3.3489 -0.4980 -8.5217 16 6 3.1211 -1.4396 -0.0923 17 6 2.6685 -2.2130 1.1514 18 8 3.1524 -1.5545 2.3237 19 6 2.6676 -0.2200 2.4854 20 6 3.1201 0.6332 1.2976 21 1 2.7562 1.8293 -1.1292 22 1 4.2093 0.8040 -1.1963 23 1 2.0745 -0.5978 -2.4025 24 1 3.8001 2.1474 -7.0082 25 1 2.7161 -1.9141 -0.9862 26 1 4.2098 -1.4360 -0.1423 27 1 3.0668 -3.2269 1.1133 28 1 1.5794 -2.2511 1.1791 29 1 3.0652 0.2018 3.4084 30 1 1.5786 -0.2316 2.5306 31 1 4.2089 0.6788 1.2757 32 1 2.7153 1.6405 1.3963 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339341649.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:02 Heat of formation + Delta-G solvation = -93.988131 kcal Electronic energy + Delta-G solvation = -16901.215354 eV Core-core repulsion = 14053.396848 eV Total energy + Delta-G solvation = -2847.818505 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.24488 -39.25773 -37.68341 -36.08016 -34.65668 -33.56810 -32.15281 -29.33208 -27.59202 -24.74988 -24.39492 -22.81365 -21.65351 -19.41688 -18.00327 -17.54301 -17.06545 -16.90008 -16.22443 -15.93278 -15.68828 -15.53289 -15.19011 -14.79248 -14.46553 -14.24438 -13.58871 -13.41846 -13.19108 -13.12521 -12.96116 -12.77032 -12.68600 -12.56856 -12.30969 -12.00482 -11.67986 -11.36888 -10.95308 -10.55265 -9.88802 -9.52785 -8.30767 -6.86583 1.39029 1.39922 1.56861 1.60296 1.61102 2.23438 2.46157 2.67237 2.90046 3.05439 3.55984 3.58795 3.64999 3.71551 3.96035 4.23550 4.41362 4.47835 4.63028 4.69766 4.76284 4.77373 4.85771 5.04666 5.10810 5.13329 5.31306 5.84085 6.15063 6.20115 6.22108 6.41002 6.86357 7.46226 8.46570 8.65593 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.042169 B = 0.005656 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.832820 B = 4949.302925 C = 5088.219781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.233 3.767 3 C 0.035 3.965 4 C 0.147 3.853 5 N -0.756 5.756 6 C 0.542 3.458 7 O -0.626 6.626 8 C -0.574 4.574 9 H 0.082 0.918 10 C 0.031 3.969 11 N -0.819 5.819 12 Si 0.994 3.006 13 H -0.250 1.250 14 H -0.271 1.271 15 H -0.265 1.265 16 C -0.141 4.141 17 C 0.061 3.939 18 O -0.386 6.386 19 C 0.059 3.941 20 C -0.138 4.138 21 H 0.042 0.958 22 H 0.077 0.923 23 H 0.389 0.611 24 H 0.275 0.725 25 H 0.082 0.918 26 H 0.110 0.890 27 H 0.123 0.877 28 H 0.039 0.961 29 H 0.128 0.872 30 H 0.038 0.962 31 H 0.116 0.884 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.321 -7.568 13.700 15.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.085 4.085 3 C 0.031 3.969 4 C 0.021 3.979 5 N -0.411 5.411 6 C 0.346 3.654 7 O -0.513 6.513 8 C -0.611 4.611 9 H 0.101 0.899 10 C -0.184 4.184 11 N -0.448 5.448 12 Si 0.814 3.186 13 H -0.174 1.174 14 H -0.196 1.196 15 H -0.190 1.190 16 C -0.179 4.179 17 C -0.016 4.016 18 O -0.305 6.305 19 C -0.018 4.018 20 C -0.177 4.177 21 H 0.060 0.940 22 H 0.095 0.905 23 H 0.223 0.777 24 H 0.085 0.915 25 H 0.101 0.899 26 H 0.128 0.872 27 H 0.141 0.859 28 H 0.057 0.943 29 H 0.146 0.854 30 H 0.056 0.944 31 H 0.134 0.866 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.691 -6.793 13.737 15.340 hybrid contribution -0.414 -0.065 -1.121 1.197 sum -1.105 -6.859 12.616 14.402 Atomic orbital electron populations 1.81182 1.13881 1.09578 1.09797 1.29339 0.95163 0.92110 0.91843 1.18807 0.80367 0.99627 0.98057 1.21055 0.99432 0.95272 0.82111 1.45849 1.57236 1.33104 1.04954 1.18482 0.79905 0.83271 0.83758 1.90562 1.43624 1.29508 1.87625 1.21435 1.34579 1.14585 0.90503 0.89940 1.26896 0.92936 0.94153 1.04415 1.70171 1.28506 1.18554 1.27611 0.85024 0.78769 0.78970 0.75871 1.17351 1.19580 1.18962 1.22383 1.04173 0.91297 1.00070 1.22734 0.97886 0.97401 0.83585 1.87939 1.71747 1.27401 1.43397 1.22737 0.97929 0.82162 0.98957 1.22339 1.04544 1.00301 0.90550 0.93953 0.90485 0.77694 0.91501 0.89942 0.87202 0.85914 0.94275 0.85440 0.94375 0.86559 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -16.10 18.54 20.01 0.37 -15.73 16 2 C 0.23 6.90 10.95 89.44 0.98 7.88 16 3 C 0.04 0.87 0.50 -53.87 -0.03 0.84 16 4 C 0.15 5.00 4.55 86.38 0.39 5.39 16 5 N -0.76 -32.17 5.02 -467.42 -2.35 -34.51 16 6 C 0.54 30.53 7.75 86.36 0.67 31.20 16 7 O -0.63 -40.63 15.02 -4.31 -0.06 -40.70 16 8 C -0.57 -32.24 9.54 24.83 0.24 -32.01 16 9 H 0.08 4.21 7.85 -2.91 -0.02 4.19 16 10 C 0.03 1.74 5.50 85.30 0.47 2.21 16 11 N -0.82 -49.51 11.83 21.84 0.26 -49.25 16 12 Si 0.99 40.80 29.56 68.60 2.03 42.83 16 13 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 14 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 15 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 16 C -0.14 -2.91 4.69 30.75 0.14 -2.77 16 17 C 0.06 1.11 6.62 72.08 0.48 1.59 16 18 O -0.39 -7.55 10.77 -148.98 -1.60 -9.16 16 19 C 0.06 0.99 6.61 72.01 0.48 1.46 16 20 C -0.14 -2.48 4.90 30.68 0.15 -2.33 16 21 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 22 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 23 H 0.39 14.85 6.90 -92.71 -0.64 14.21 16 24 H 0.28 15.01 8.29 -92.71 -0.77 14.24 16 25 H 0.08 1.81 6.98 -2.39 -0.02 1.80 16 26 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.04 0.79 7.38 -2.39 -0.02 0.77 16 29 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.04 0.72 7.38 -2.39 -0.02 0.70 16 31 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -76.26 275.43 3.11 -73.15 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.50 Total: 19.90 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 3.97 Total: 13.46 kcal Atomic # 7 Polarization: -97.77 SS G_CDS: -1.72 Total: -99.49 kcal Atomic # 8 Polarization: -48.18 SS G_CDS: -1.67 Total: -49.85 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -76.26 3.11 -73.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339341649.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.842 kcal (2) G-P(sol) polarization free energy of solvation -76.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds