Wall clock time and date at job start Sun Mar 29 2020 22:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39639 * 127.32110 * 2 1 4 4 N 1.30883 * 107.87754 * 179.82965 * 3 2 1 5 5 N 1.28443 * 110.94188 * 0.45059 * 4 3 2 6 6 C 1.46498 * 125.19481 * 179.74737 * 5 4 3 7 7 C 1.36649 * 109.61021 * 359.71605 * 5 4 3 8 8 C 1.47008 * 126.89644 * 179.97438 * 7 5 4 9 9 O 1.21548 * 120.00262 * 179.97438 * 8 7 5 10 10 O 1.34814 * 119.99722 * 0.02562 * 8 7 5 11 11 C 1.45197 * 117.00243 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.46800 * 329.99482 * 11 10 8 13 13 C 1.53000 * 109.47148 * 89.99181 * 11 10 8 14 14 C 1.50694 * 109.47528 * 209.99748 * 11 10 8 15 15 H 1.07998 * 119.99856 * 359.97438 * 14 11 10 16 16 C 1.37872 * 120.00241 * 179.97438 * 14 11 10 17 17 N 1.31516 * 120.00532 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 120.00065 * 179.97438 * 16 14 11 19 19 H 1.48495 * 109.47147 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47291 * 119.99657 * 18 16 14 21 21 H 1.48504 * 109.46928 * 239.99555 * 18 16 14 22 22 H 1.09002 * 109.47152 * 269.68370 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.68471 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.68451 * 1 2 3 25 25 H 1.07998 * 126.06503 * 359.97438 * 3 2 1 26 26 H 1.09005 * 109.47534 * 269.96618 * 6 5 4 27 27 H 1.09004 * 109.47034 * 29.95754 * 6 5 4 28 28 H 1.08998 * 109.47017 * 149.96329 * 6 5 4 29 29 H 1.08996 * 109.47403 * 300.00123 * 13 11 10 30 30 H 1.08998 * 109.47357 * 60.00812 * 13 11 10 31 31 H 1.09002 * 109.46991 * 180.02562 * 13 11 10 32 32 H 0.96989 * 120.00948 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3536 1.1105 0.0000 4 7 3.5878 0.6748 0.0037 5 7 3.6214 -0.6092 -0.0033 6 6 4.8403 -1.4219 -0.0071 7 6 2.3467 -1.1013 -0.0061 8 6 1.9467 -2.5159 -0.0144 9 8 0.7685 -2.8144 -0.0155 10 8 2.8869 -3.4821 -0.0197 11 6 2.4194 -4.8568 -0.0272 12 1 1.4599 -4.9170 0.4865 13 6 2.2550 -5.3317 -1.4723 14 6 3.4226 -5.7325 0.6783 15 1 4.3218 -5.2993 1.0907 16 6 3.1924 -7.0866 0.7973 17 7 2.0972 -7.6142 0.2956 18 14 4.4363 -8.1722 1.6713 19 1 5.5743 -7.3418 2.1409 20 1 3.7888 -8.8290 2.8351 21 1 4.9349 -9.2088 0.7320 22 1 -0.3633 -0.0057 1.0277 23 1 -0.3633 -0.8872 -0.5187 24 1 -0.3633 0.8928 -0.5089 25 1 2.0448 2.1454 -0.0004 26 1 5.1429 -1.6184 -1.0357 27 1 5.6363 -0.8855 0.5095 28 1 4.6487 -2.3664 0.5020 29 1 1.5293 -4.6984 -1.9825 30 1 3.2145 -5.2715 -1.9859 31 1 1.9036 -6.3635 -1.4779 32 1 1.9354 -8.5668 0.3790 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344529903.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:10 Heat of formation + Delta-G solvation = -17.156978 kcal Electronic energy + Delta-G solvation = -17066.800267 eV Core-core repulsion = 14222.313411 eV Total energy + Delta-G solvation = -2844.486857 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.36331 -39.29467 -35.91037 -33.79838 -33.25918 -31.72960 -29.69912 -28.22344 -25.98959 -25.41097 -23.55365 -21.15741 -20.52036 -19.46801 -17.56668 -16.72580 -16.19583 -15.85673 -15.13404 -14.74367 -14.58423 -13.79464 -13.20656 -13.18018 -13.03932 -12.54845 -12.28626 -12.17842 -12.05666 -11.94144 -11.31097 -11.14974 -10.90896 -10.50952 -10.42533 -10.35860 -9.87283 -9.67746 -9.05419 -9.00521 -8.59356 -8.54676 -6.26624 -4.34448 1.40209 2.65167 2.70205 3.18171 3.24314 3.28343 3.44866 3.47566 4.25994 4.63498 5.01563 5.06978 5.25941 5.36669 5.48382 5.49820 5.73966 5.88495 5.92150 6.12613 6.34447 6.53076 6.68301 6.78642 6.81764 6.87828 7.03410 7.48806 7.62504 7.81233 8.02815 8.13544 8.49002 8.75699 9.31410 10.80857 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.036475 B = 0.006590 C = 0.005914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.463611 B = 4247.593692 C = 4733.330938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.132 4.132 3 C -0.011 4.011 4 N -0.277 5.277 5 N -0.263 5.263 6 C 0.082 3.918 7 C -0.019 4.019 8 C 0.528 3.472 9 O -0.499 6.499 10 O -0.356 6.356 11 C 0.217 3.783 12 H 0.049 0.951 13 C -0.155 4.155 14 C -0.523 4.523 15 H 0.069 0.931 16 C 0.064 3.936 17 N -0.887 5.887 18 Si 0.912 3.088 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.281 1.281 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.065 0.935 25 H 0.186 0.814 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.117 0.883 29 H 0.017 0.983 30 H 0.037 0.963 31 H 0.101 0.899 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.758 11.934 -1.044 12.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.142 4.142 3 C -0.187 4.187 4 N -0.111 5.111 5 N -0.053 5.053 6 C -0.058 4.058 7 C -0.145 4.145 8 C 0.370 3.630 9 O -0.387 6.387 10 O -0.273 6.273 11 C 0.165 3.835 12 H 0.067 0.933 13 C -0.213 4.213 14 C -0.561 4.561 15 H 0.087 0.913 16 C -0.139 4.139 17 N -0.525 5.525 18 Si 0.739 3.261 19 H -0.195 1.195 20 H -0.207 1.207 21 H -0.207 1.207 22 H 0.088 0.912 23 H 0.100 0.900 24 H 0.084 0.916 25 H 0.203 0.797 26 H 0.104 0.896 27 H 0.110 0.890 28 H 0.136 0.864 29 H 0.036 0.964 30 H 0.056 0.944 31 H 0.119 0.881 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.565 11.818 -1.061 12.139 hybrid contribution -0.212 -0.969 0.357 1.054 sum 2.353 10.849 -0.705 11.123 Atomic orbital electron populations 1.20235 0.88029 1.03096 1.02506 1.20779 0.97235 0.90465 1.05745 1.23406 0.87801 0.99785 1.07697 1.73103 1.24545 0.93844 1.19609 1.45724 1.06483 1.03562 1.49498 1.22442 0.82775 0.95565 1.04980 1.20848 0.85567 0.92678 1.15367 1.19605 0.84831 0.84676 0.73913 1.90803 1.18610 1.82979 1.46261 1.86545 1.38823 1.19861 1.82047 1.20724 0.97271 0.70650 0.94901 0.93300 1.22172 0.98790 1.03909 0.96434 1.21013 1.06362 0.91846 1.36858 0.91274 1.24884 0.95968 0.97563 0.95475 1.69896 1.25081 1.12936 1.44540 0.86217 0.80728 0.80006 0.79169 1.19487 1.20688 1.20659 0.91239 0.90046 0.91624 0.79745 0.89601 0.88951 0.86437 0.96410 0.94400 0.88105 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.10 9.92 36.01 0.36 -0.74 16 2 C -0.13 -2.09 6.29 -104.01 -0.65 -2.74 16 3 C -0.01 -0.16 12.00 -17.43 -0.21 -0.37 16 4 N -0.28 -4.34 11.90 30.58 0.36 -3.97 16 5 N -0.26 -4.32 3.75 -63.90 -0.24 -4.56 16 6 C 0.08 1.12 10.81 59.85 0.65 1.76 16 7 C -0.02 -0.35 6.96 -82.07 -0.57 -0.92 16 8 C 0.53 11.35 7.91 34.28 0.27 11.62 16 9 O -0.50 -11.68 14.32 -19.30 -0.28 -11.96 16 10 O -0.36 -8.09 7.33 -40.80 -0.30 -8.39 16 11 C 0.22 5.60 2.56 -27.89 -0.07 5.53 16 12 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 13 C -0.16 -3.82 9.33 37.16 0.35 -3.48 16 14 C -0.52 -14.04 8.90 -34.45 -0.31 -14.35 16 15 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 16 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 17 N -0.89 -24.56 11.32 55.43 0.63 -23.93 16 18 Si 0.91 20.43 29.54 -169.99 -5.02 15.41 16 19 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.08 1.27 6.68 -51.93 -0.35 0.93 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.19 1.83 8.06 -52.49 -0.42 1.40 16 26 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.12 1.80 6.15 -51.93 -0.32 1.48 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.10 2.66 6.07 -51.93 -0.32 2.34 16 32 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 278.55 15.07 4.20 4.20 Total: -1.00 -30.16 278.55 -4.79 -34.95 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -3.86 Total: 0.36 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -0.29 Total: -2.09 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.75 Total: -32.47 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.58 Total: -20.35 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.16 -4.79 -34.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344529903.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.789 kcal (2) G-P(sol) polarization free energy of solvation -30.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds