Wall clock time and date at job start Sun Mar 29 2020 22:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39639 * 127.32110 * 2 1 4 4 N 1.30883 * 107.87754 * 179.82965 * 3 2 1 5 5 N 1.28443 * 110.94188 * 0.45059 * 4 3 2 6 6 C 1.46498 * 125.19481 * 179.74737 * 5 4 3 7 7 C 1.36649 * 109.61021 * 359.71605 * 5 4 3 8 8 C 1.47008 * 126.89644 * 179.97438 * 7 5 4 9 9 O 1.21548 * 120.00262 * 179.97438 * 8 7 5 10 10 O 1.34814 * 119.99722 * 0.02562 * 8 7 5 11 11 C 1.45197 * 117.00243 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.46800 * 329.99482 * 11 10 8 13 13 C 1.53000 * 109.47148 * 89.99181 * 11 10 8 14 14 C 1.50694 * 109.47528 * 209.99748 * 11 10 8 15 15 H 1.07998 * 119.99856 * 359.97438 * 14 11 10 16 16 C 1.37872 * 120.00241 * 179.97438 * 14 11 10 17 17 N 1.31516 * 120.00532 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 120.00065 * 179.97438 * 16 14 11 19 19 H 1.48495 * 109.47147 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47291 * 119.99657 * 18 16 14 21 21 H 1.48504 * 109.46928 * 239.99555 * 18 16 14 22 22 H 1.09002 * 109.47152 * 269.68370 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.68471 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.68451 * 1 2 3 25 25 H 1.07998 * 126.06503 * 359.97438 * 3 2 1 26 26 H 1.09005 * 109.47534 * 269.96618 * 6 5 4 27 27 H 1.09004 * 109.47034 * 29.95754 * 6 5 4 28 28 H 1.08998 * 109.47017 * 149.96329 * 6 5 4 29 29 H 1.08996 * 109.47403 * 300.00123 * 13 11 10 30 30 H 1.08998 * 109.47357 * 60.00812 * 13 11 10 31 31 H 1.09002 * 109.46991 * 180.02562 * 13 11 10 32 32 H 0.96989 * 120.00948 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3536 1.1105 0.0000 4 7 3.5878 0.6748 0.0037 5 7 3.6214 -0.6092 -0.0033 6 6 4.8403 -1.4219 -0.0071 7 6 2.3467 -1.1013 -0.0061 8 6 1.9467 -2.5159 -0.0144 9 8 0.7685 -2.8144 -0.0155 10 8 2.8869 -3.4821 -0.0197 11 6 2.4194 -4.8568 -0.0272 12 1 1.4599 -4.9170 0.4865 13 6 2.2550 -5.3317 -1.4723 14 6 3.4226 -5.7325 0.6783 15 1 4.3218 -5.2993 1.0907 16 6 3.1924 -7.0866 0.7973 17 7 2.0972 -7.6142 0.2956 18 14 4.4363 -8.1722 1.6713 19 1 5.5743 -7.3418 2.1409 20 1 3.7888 -8.8290 2.8351 21 1 4.9349 -9.2088 0.7320 22 1 -0.3633 -0.0057 1.0277 23 1 -0.3633 -0.8872 -0.5187 24 1 -0.3633 0.8928 -0.5089 25 1 2.0448 2.1454 -0.0004 26 1 5.1429 -1.6184 -1.0357 27 1 5.6363 -0.8855 0.5095 28 1 4.6487 -2.3664 0.5020 29 1 1.5293 -4.6984 -1.9825 30 1 3.2145 -5.2715 -1.9859 31 1 1.9036 -6.3635 -1.4779 32 1 1.9354 -8.5668 0.3790 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344529903.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:10 Heat of formation + Delta-G solvation = -35.283145 kcal Electronic energy + Delta-G solvation = -17067.586277 eV Core-core repulsion = 14222.313411 eV Total energy + Delta-G solvation = -2845.272866 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.60422 -41.05967 -37.72293 -35.44968 -34.80982 -33.03178 -31.64224 -29.47665 -27.48085 -27.12229 -25.15913 -22.84002 -21.86265 -21.01933 -19.10490 -18.64579 -17.68654 -17.53390 -16.65767 -16.41082 -16.26499 -15.18794 -14.61975 -14.44840 -14.34363 -14.20534 -13.96636 -13.46352 -13.37633 -13.21243 -13.19492 -12.96137 -12.79796 -12.41828 -12.14569 -11.72406 -11.65702 -11.56494 -11.02087 -10.63049 -10.31834 -9.77382 -8.30431 -6.47348 -0.02747 1.40184 1.42668 1.44873 1.53064 1.56313 1.83306 1.88812 2.38800 3.01171 3.48421 3.63059 4.11372 4.18112 4.33742 4.41455 4.48937 4.59411 4.72402 4.77259 4.79765 4.85893 5.01714 5.07858 5.23918 5.43823 5.52991 5.58822 5.68640 5.84156 5.99490 6.54914 6.76769 6.98310 7.23898 8.77734 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.036475 B = 0.006590 C = 0.005914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.463611 B = 4247.593692 C = 4733.330938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.126 4.126 3 C 0.000 4.000 4 N -0.277 5.277 5 N -0.267 5.267 6 C 0.078 3.922 7 C -0.058 4.058 8 C 0.525 3.475 9 O -0.528 6.528 10 O -0.353 6.353 11 C 0.219 3.781 12 H 0.010 0.990 13 C -0.143 4.143 14 C -0.545 4.545 15 H 0.072 0.928 16 C 0.017 3.983 17 N -0.917 5.917 18 Si 0.982 3.018 19 H -0.261 1.261 20 H -0.278 1.278 21 H -0.272 1.272 22 H 0.077 0.923 23 H 0.054 0.946 24 H 0.104 0.896 25 H 0.231 0.769 26 H 0.097 0.903 27 H 0.121 0.879 28 H 0.096 0.904 29 H 0.022 0.978 30 H 0.048 0.952 31 H 0.082 0.918 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.906 13.547 -0.806 13.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.137 4.137 3 C -0.175 4.175 4 N -0.111 5.111 5 N -0.057 5.057 6 C -0.061 4.061 7 C -0.182 4.182 8 C 0.369 3.631 9 O -0.417 6.417 10 O -0.269 6.269 11 C 0.167 3.833 12 H 0.028 0.972 13 C -0.201 4.201 14 C -0.582 4.582 15 H 0.090 0.910 16 C -0.183 4.183 17 N -0.555 5.555 18 Si 0.806 3.194 19 H -0.185 1.185 20 H -0.204 1.204 21 H -0.198 1.198 22 H 0.095 0.905 23 H 0.073 0.927 24 H 0.122 0.878 25 H 0.247 0.753 26 H 0.115 0.885 27 H 0.139 0.861 28 H 0.114 0.886 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.723 13.447 -0.830 13.978 hybrid contribution -0.624 -1.344 0.276 1.507 sum 3.099 12.103 -0.553 12.506 Atomic orbital electron populations 1.20309 0.86709 1.03677 1.03104 1.21243 0.98314 0.90293 1.03840 1.24108 0.86503 1.01141 1.05697 1.73125 1.25497 0.93261 1.19243 1.45930 1.06297 1.03941 1.49568 1.22570 0.82718 0.94912 1.05880 1.20688 0.87445 0.91168 1.18939 1.20142 0.84333 0.85713 0.72913 1.90780 1.19560 1.83611 1.47760 1.86552 1.38959 1.18918 1.82475 1.20438 0.95483 0.72406 0.95015 0.97228 1.21998 0.99322 1.02748 0.95992 1.21290 1.06676 0.92594 1.37659 0.90971 1.25814 0.97818 0.98762 0.95880 1.70016 1.26725 1.13486 1.45260 0.85138 0.78337 0.78002 0.77953 1.18471 1.20382 1.19771 0.90491 0.92700 0.87781 0.75291 0.88456 0.86070 0.88590 0.95935 0.93327 0.89924 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.05 9.92 71.24 0.71 -1.34 16 2 C -0.13 -3.76 6.29 -19.47 -0.12 -3.89 16 3 C 0.00 0.01 12.00 85.17 1.02 1.03 16 4 N -0.28 -7.93 11.90 -57.15 -0.68 -8.61 16 5 N -0.27 -8.44 3.75 -356.06 -1.34 -9.77 16 6 C 0.08 2.05 10.81 127.77 1.38 3.43 16 7 C -0.06 -2.11 6.96 40.75 0.28 -1.82 16 8 C 0.52 23.26 7.91 70.12 0.55 23.82 16 9 O -0.53 -25.80 14.32 19.68 0.28 -25.52 16 10 O -0.35 -16.54 7.33 -57.27 -0.42 -16.96 16 11 C 0.22 11.77 2.56 29.85 0.08 11.85 16 12 H 0.01 0.60 7.16 -2.39 -0.02 0.58 16 13 C -0.14 -7.23 9.33 71.98 0.67 -6.56 16 14 C -0.54 -29.77 8.90 25.60 0.23 -29.54 16 15 H 0.07 3.80 7.81 -2.91 -0.02 3.78 16 16 C 0.02 0.92 5.30 84.65 0.45 1.37 16 17 N -0.92 -51.67 11.32 21.45 0.24 -51.43 16 18 Si 0.98 41.66 29.54 68.60 2.03 43.69 16 19 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 20 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 22 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.05 1.71 6.68 -2.39 -0.02 1.70 16 24 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 25 H 0.23 3.31 8.06 -2.91 -0.02 3.28 16 26 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 27 H 0.12 2.41 8.14 -2.38 -0.02 2.39 16 28 H 0.10 2.96 6.15 -2.39 -0.01 2.94 16 29 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.08 4.49 6.07 -2.39 -0.01 4.48 16 32 H 0.27 14.26 8.31 -92.72 -0.77 13.48 16 Total: -1.00 -66.11 278.55 6.49 -59.62 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 1.13 Total: 10.64 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 5.25 Total: -1.66 kcal Atomic # 7 Polarization: -68.03 SS G_CDS: -1.77 Total: -69.80 kcal Atomic # 8 Polarization: -42.34 SS G_CDS: -0.14 Total: -42.48 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -66.11 6.49 -59.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344529903.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.340 kcal (2) G-P(sol) polarization free energy of solvation -66.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds