Wall clock time and date at job start Sun Mar 29 2020 22:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47124 * 2 1 4 4 H 1.09004 * 109.46930 * 304.99861 * 3 2 1 5 5 C 1.50703 * 109.47292 * 184.99886 * 3 2 1 6 6 H 1.08005 * 119.99876 * 239.99835 * 5 3 2 7 7 C 1.37874 * 119.99789 * 59.99693 * 5 3 2 8 8 N 1.31514 * 120.00287 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99733 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47151 * 90.00298 * 9 7 5 11 11 H 1.48507 * 109.47197 * 210.00055 * 9 7 5 12 12 H 1.48498 * 109.47171 * 330.00226 * 9 7 5 13 13 O 1.45206 * 109.47129 * 64.99748 * 3 2 1 14 14 C 1.34232 * 116.99998 * 269.99942 * 13 3 2 15 15 O 1.20825 * 119.99673 * 0.02562 * 14 13 3 16 16 C 1.50695 * 119.99791 * 179.97438 * 14 13 3 17 17 C 1.50699 * 109.47071 * 180.02562 * 16 14 13 18 18 C 1.39869 * 125.90099 * 125.00301 * 17 16 14 19 19 C 1.35314 * 107.91994 * 180.02562 * 18 17 16 20 20 N 1.34947 * 107.75098 * 359.97438 * 19 18 17 21 21 H 0.96993 * 126.04056 * 180.02562 * 20 19 18 22 22 N 1.30837 * 125.89716 * 304.69191 * 17 16 14 23 23 H 1.09001 * 109.47309 * 59.99895 * 1 2 3 24 24 H 1.09001 * 109.47279 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47658 * 300.00178 * 1 2 3 26 26 H 1.08997 * 109.47702 * 239.99805 * 2 1 3 27 27 H 1.09005 * 109.47093 * 119.99647 * 2 1 3 28 28 H 0.96996 * 120.00180 * 180.02562 * 8 7 5 29 29 H 1.08994 * 109.47325 * 300.00431 * 16 14 13 30 30 H 1.09007 * 109.47169 * 60.00364 * 16 14 13 31 31 H 1.07999 * 126.03658 * 0.02562 * 18 17 16 32 32 H 1.08004 * 126.12339 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0049 0.8813 -1.3817 10 1 6.5549 -0.3500 -0.7600 11 1 6.3830 0.9224 -2.8172 12 1 6.5568 2.0739 -0.6901 13 8 1.6557 2.0917 1.2407 14 6 0.4726 2.7255 1.2559 15 8 -0.2193 2.7370 0.2654 16 6 0.0068 3.4217 2.5086 17 6 -1.3413 4.0489 2.2631 18 6 -2.4972 3.8315 3.0201 19 6 -3.4930 4.5727 2.4817 20 7 -2.9853 5.2361 1.4220 21 1 -3.4710 5.8446 0.8435 22 7 -1.6312 4.8952 1.3084 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3635 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.8292 -0.0611 -2.9498 29 1 -0.0721 2.6971 3.3190 30 1 0.7237 4.1959 2.7821 31 1 -2.5801 3.1860 3.8820 32 1 -4.5118 4.6241 2.8366 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344869111.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:19 Heat of formation + Delta-G solvation = -21.646678 kcal Electronic energy + Delta-G solvation = -16837.188373 eV Core-core repulsion = 13992.506829 eV Total energy + Delta-G solvation = -2844.681545 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.10605 -39.35080 -35.73349 -33.43594 -32.79705 -31.28172 -29.88016 -28.71658 -27.05411 -23.26238 -21.90866 -21.04601 -19.72668 -19.00866 -18.07882 -16.88039 -16.50934 -15.42318 -15.22670 -14.48055 -14.38560 -13.76995 -13.50571 -12.95547 -12.82484 -12.67073 -12.34841 -11.65068 -11.34730 -11.23154 -11.08178 -10.90465 -10.59135 -10.50606 -10.22874 -9.72397 -9.53868 -9.30445 -9.22942 -8.73050 -8.67694 -8.39156 -6.12926 -4.19638 1.97429 2.76372 2.94289 3.17731 3.28260 3.33765 3.38079 3.89719 4.39308 4.66366 4.85594 5.18924 5.28447 5.60653 5.73391 5.78299 5.85933 6.06131 6.29375 6.36314 6.52677 6.65645 6.94631 7.05089 7.24488 7.32021 7.35366 7.68335 7.77441 7.81589 8.04721 8.23585 8.74225 8.99175 9.45508 10.93916 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.046017 B = 0.005545 C = 0.005350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.324317 B = 5048.661846 C = 5232.200992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.222 3.778 4 H 0.047 0.953 5 C -0.520 4.520 6 H 0.069 0.931 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.910 3.090 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.272 1.272 13 O -0.358 6.358 14 C 0.452 3.548 15 O -0.502 6.502 16 C -0.038 4.038 17 C 0.086 3.914 18 C -0.264 4.264 19 C 0.050 3.950 20 N -0.479 5.479 21 H 0.437 0.563 22 N -0.259 5.259 23 H 0.051 0.949 24 H 0.031 0.969 25 H 0.032 0.968 26 H 0.107 0.893 27 H 0.041 0.959 28 H 0.265 0.735 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.148 0.852 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.113 5.867 9.921 16.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.169 3.831 4 H 0.064 0.936 5 C -0.558 4.558 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.527 5.527 9 Si 0.737 3.263 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.275 6.275 14 C 0.293 3.707 15 O -0.391 6.391 16 C -0.077 4.077 17 C -0.081 4.081 18 C -0.294 4.294 19 C -0.097 4.097 20 N -0.187 5.187 21 H 0.281 0.719 22 N -0.082 5.082 23 H 0.070 0.930 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.125 0.875 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.166 0.834 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -10.826 6.382 8.422 15.128 hybrid contribution 0.133 -0.278 0.148 0.342 sum -10.694 6.104 8.570 15.002 Atomic orbital electron populations 1.21847 0.98394 0.98831 1.00792 1.22009 0.92595 0.99438 1.03262 1.20641 0.94890 0.88699 0.78822 0.93570 1.21063 0.89780 1.38744 1.06170 0.91327 1.24884 0.99162 0.94859 0.95075 1.69896 1.35317 1.37970 1.09496 0.86295 0.84029 0.78643 0.77286 1.20387 1.21042 1.19631 1.86453 1.34261 1.62699 1.44062 1.22910 0.81045 0.77412 0.89332 1.90640 1.55337 1.57559 1.35515 1.19650 0.91627 1.00202 0.96269 1.21655 0.95765 0.96770 0.93956 1.21383 0.92249 1.09291 1.06468 1.22508 0.99874 0.96629 0.90713 1.46397 1.08735 1.38372 1.25230 0.71943 1.77475 0.91770 1.17955 1.20983 0.92962 0.94960 0.94861 0.87458 0.93994 0.92467 0.86427 0.86644 0.83422 0.80865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.56 37.15 0.32 -2.88 16 2 C -0.14 -3.43 5.49 -26.73 -0.15 -3.57 16 3 C 0.22 6.03 2.25 -27.88 -0.06 5.97 16 4 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 5 C -0.52 -14.77 8.90 -34.44 -0.31 -15.08 16 6 H 0.07 1.92 7.81 -52.48 -0.41 1.51 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.55 11.29 55.43 0.63 -24.92 16 9 Si 0.91 21.31 29.54 -169.99 -5.02 16.29 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 13 O -0.36 -8.62 9.81 -39.26 -0.39 -9.01 16 14 C 0.45 9.66 6.41 36.00 0.23 9.89 16 15 O -0.50 -12.21 12.71 -18.75 -0.24 -12.45 16 16 C -0.04 -0.59 6.39 -29.04 -0.19 -0.77 16 17 C 0.09 1.36 6.01 -82.41 -0.50 0.86 16 18 C -0.26 -3.26 10.72 -40.01 -0.43 -3.69 16 19 C 0.05 0.51 11.99 -17.22 -0.21 0.31 16 20 N -0.48 -5.85 7.36 30.45 0.22 -5.63 16 21 H 0.44 3.79 8.96 -182.61 -1.64 2.15 16 22 N -0.26 -4.42 12.06 33.67 0.41 -4.01 16 23 H 0.05 1.26 7.80 -51.93 -0.40 0.85 16 24 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.03 0.72 6.06 -51.92 -0.31 0.41 16 26 H 0.11 2.95 5.95 -51.93 -0.31 2.64 16 27 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.12 1.43 8.12 -51.93 -0.42 1.00 16 30 H 0.12 1.56 8.14 -51.93 -0.42 1.13 16 31 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.17 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 276.81 15.07 4.17 4.17 Total: -1.00 -34.25 276.81 -6.71 -40.96 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -5.12 Total: 1.92 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -1.38 Total: -7.33 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 1.26 Total: -34.56 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.62 Total: -21.46 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -34.25 -6.71 -40.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344869111.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.317 kcal (2) G-P(sol) polarization free energy of solvation -34.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds