Wall clock time and date at job start Sun Mar 29 2020 22:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47124 * 2 1 4 4 H 1.09004 * 109.46930 * 304.99861 * 3 2 1 5 5 C 1.50703 * 109.47292 * 184.99886 * 3 2 1 6 6 H 1.08005 * 119.99876 * 239.99835 * 5 3 2 7 7 C 1.37874 * 119.99789 * 59.99693 * 5 3 2 8 8 N 1.31514 * 120.00287 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99733 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47151 * 90.00298 * 9 7 5 11 11 H 1.48507 * 109.47197 * 210.00055 * 9 7 5 12 12 H 1.48498 * 109.47171 * 330.00226 * 9 7 5 13 13 O 1.45206 * 109.47129 * 64.99748 * 3 2 1 14 14 C 1.34232 * 116.99998 * 269.99942 * 13 3 2 15 15 O 1.20825 * 119.99673 * 0.02562 * 14 13 3 16 16 C 1.50695 * 119.99791 * 179.97438 * 14 13 3 17 17 C 1.50699 * 109.47071 * 180.02562 * 16 14 13 18 18 C 1.39869 * 125.90099 * 125.00301 * 17 16 14 19 19 C 1.35314 * 107.91994 * 180.02562 * 18 17 16 20 20 N 1.34947 * 107.75098 * 359.97438 * 19 18 17 21 21 H 0.96993 * 126.04056 * 180.02562 * 20 19 18 22 22 N 1.30837 * 125.89716 * 304.69191 * 17 16 14 23 23 H 1.09001 * 109.47309 * 59.99895 * 1 2 3 24 24 H 1.09001 * 109.47279 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47658 * 300.00178 * 1 2 3 26 26 H 1.08997 * 109.47702 * 239.99805 * 2 1 3 27 27 H 1.09005 * 109.47093 * 119.99647 * 2 1 3 28 28 H 0.96996 * 120.00180 * 180.02562 * 8 7 5 29 29 H 1.08994 * 109.47325 * 300.00431 * 16 14 13 30 30 H 1.09007 * 109.47169 * 60.00364 * 16 14 13 31 31 H 1.07999 * 126.03658 * 0.02562 * 18 17 16 32 32 H 1.08004 * 126.12339 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0049 0.8813 -1.3817 10 1 6.5549 -0.3500 -0.7600 11 1 6.3830 0.9224 -2.8172 12 1 6.5568 2.0739 -0.6901 13 8 1.6557 2.0917 1.2407 14 6 0.4726 2.7255 1.2559 15 8 -0.2193 2.7370 0.2654 16 6 0.0068 3.4217 2.5086 17 6 -1.3413 4.0489 2.2631 18 6 -2.4972 3.8315 3.0201 19 6 -3.4930 4.5727 2.4817 20 7 -2.9853 5.2361 1.4220 21 1 -3.4710 5.8446 0.8435 22 7 -1.6312 4.8952 1.3084 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3635 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.8292 -0.0611 -2.9498 29 1 -0.0721 2.6971 3.3190 30 1 0.7237 4.1959 2.7821 31 1 -2.5801 3.1860 3.8820 32 1 -4.5118 4.6241 2.8366 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344869111.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:18 Heat of formation + Delta-G solvation = -44.970766 kcal Electronic energy + Delta-G solvation = -16838.199782 eV Core-core repulsion = 13992.506829 eV Total energy + Delta-G solvation = -2845.692953 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.13048 -41.10194 -37.60947 -35.46560 -34.01885 -33.27203 -30.82505 -30.05538 -29.00993 -25.28526 -23.35552 -22.24761 -21.46403 -20.41683 -18.99269 -18.80224 -18.40246 -17.13661 -17.09392 -16.27232 -15.51064 -15.13867 -14.77623 -14.41449 -14.35580 -14.22896 -13.65976 -13.33992 -13.22849 -13.08697 -12.97917 -12.75151 -12.51735 -12.13015 -11.74436 -11.56915 -11.39944 -11.16557 -10.79260 -10.50532 -10.38219 -9.59834 -8.25700 -6.42631 1.02073 1.42226 1.44694 1.49687 1.55798 1.71022 2.07799 2.27826 2.52246 3.03894 3.62464 4.00385 4.16997 4.38178 4.39129 4.41504 4.52255 4.59643 4.76780 4.86330 4.89854 5.08905 5.13071 5.24073 5.41586 5.53689 5.68458 5.71593 6.02180 6.19445 6.54985 6.63826 6.78369 7.09071 7.30523 8.81210 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.046017 B = 0.005545 C = 0.005350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.324317 B = 5048.661846 C = 5232.200992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.128 4.128 3 C 0.226 3.774 4 H 0.000 1.000 5 C -0.549 4.549 6 H 0.067 0.933 7 C 0.016 3.984 8 N -0.917 5.917 9 Si 0.982 3.018 10 H -0.265 1.265 11 H -0.279 1.279 12 H -0.266 1.266 13 O -0.364 6.364 14 C 0.445 3.555 15 O -0.536 6.536 16 C -0.028 4.028 17 C 0.063 3.937 18 C -0.281 4.281 19 C 0.071 3.929 20 N -0.475 5.475 21 H 0.449 0.551 22 N -0.324 5.324 23 H 0.028 0.972 24 H 0.061 0.939 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.049 0.951 28 H 0.270 0.730 29 H 0.156 0.844 30 H 0.133 0.867 31 H 0.175 0.825 32 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.759 5.781 11.749 17.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.166 4.166 3 C 0.172 3.828 4 H 0.018 0.982 5 C -0.587 4.587 6 H 0.085 0.915 7 C -0.184 4.184 8 N -0.555 5.555 9 Si 0.805 3.195 10 H -0.190 1.190 11 H -0.205 1.205 12 H -0.190 1.190 13 O -0.281 6.281 14 C 0.288 3.712 15 O -0.426 6.426 16 C -0.066 4.066 17 C -0.103 4.103 18 C -0.310 4.310 19 C -0.077 4.077 20 N -0.185 5.185 21 H 0.295 0.705 22 N -0.149 5.149 23 H 0.047 0.953 24 H 0.080 0.920 25 H 0.058 0.942 26 H 0.102 0.898 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.173 0.827 30 H 0.151 0.849 31 H 0.192 0.808 32 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -11.488 6.308 10.264 16.647 hybrid contribution 0.198 -0.182 -0.422 0.501 sum -11.290 6.127 9.842 16.182 Atomic orbital electron populations 1.21683 0.96358 1.00430 0.99943 1.21845 0.94350 0.98047 1.02361 1.20319 0.94457 0.89274 0.78730 0.98209 1.21365 0.90587 1.39805 1.06917 0.91493 1.25825 1.04313 0.93904 0.94310 1.70028 1.37462 1.38087 1.09908 0.85200 0.77638 0.79177 0.77495 1.19009 1.20451 1.19021 1.86446 1.36098 1.63279 1.42289 1.24137 0.79571 0.76465 0.91029 1.90623 1.55928 1.58624 1.37391 1.19810 0.92254 1.00895 0.93690 1.21871 0.96636 0.97059 0.94746 1.21786 0.91311 1.10452 1.07403 1.23333 1.01523 0.94096 0.88721 1.46443 1.07526 1.38543 1.25990 0.70513 1.77363 0.94632 1.19925 1.22932 0.95283 0.91983 0.94174 0.89793 0.93205 0.92117 0.82659 0.84908 0.80767 0.75776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.77 8.56 71.98 0.62 -5.16 16 2 C -0.13 -6.62 5.49 30.59 0.17 -6.46 16 3 C 0.23 12.71 2.25 29.85 0.07 12.77 16 4 H 0.00 0.01 7.16 -2.38 -0.02 -0.01 16 5 C -0.55 -31.95 8.90 25.60 0.23 -31.73 16 6 H 0.07 3.80 7.81 -2.91 -0.02 3.78 16 7 C 0.02 0.90 5.29 84.65 0.45 1.34 16 8 N -0.92 -53.84 11.29 21.45 0.24 -53.60 16 9 Si 0.98 43.71 29.54 68.60 2.03 45.74 16 10 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 13 O -0.36 -17.88 9.81 -51.43 -0.50 -18.39 16 14 C 0.44 19.27 6.41 71.23 0.46 19.73 16 15 O -0.54 -26.96 12.71 21.97 0.28 -26.68 16 16 C -0.03 -0.82 6.39 29.10 0.19 -0.64 16 17 C 0.06 1.92 6.01 43.10 0.26 2.18 16 18 C -0.28 -6.11 10.72 21.99 0.24 -5.88 16 19 C 0.07 1.22 11.99 83.54 1.00 2.22 16 20 N -0.48 -10.88 7.36 -57.59 -0.42 -11.30 16 21 H 0.45 7.20 8.96 -213.33 -1.91 5.29 16 22 N -0.32 -11.03 12.06 -47.39 -0.57 -11.60 16 23 H 0.03 1.42 7.80 -2.39 -0.02 1.40 16 24 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 25 H 0.04 1.73 6.06 -2.38 -0.01 1.72 16 26 H 0.08 4.75 5.95 -2.39 -0.01 4.73 16 27 H 0.05 2.44 8.14 -2.38 -0.02 2.42 16 28 H 0.27 14.80 8.31 -92.71 -0.77 14.02 16 29 H 0.16 3.35 8.12 -2.39 -0.02 3.33 16 30 H 0.13 3.43 8.14 -2.38 -0.02 3.41 16 31 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 32 H 0.23 1.34 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -77.63 276.81 3.94 -73.69 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -0.77 Total: 13.76 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: 3.67 Total: -11.62 kcal Atomic # 7 Polarization: -75.75 SS G_CDS: -0.75 Total: -76.50 kcal Atomic # 8 Polarization: -44.84 SS G_CDS: -0.23 Total: -45.07 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -77.63 3.94 -73.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344869111.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.723 kcal (2) G-P(sol) polarization free energy of solvation -77.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds