Wall clock time and date at job start Sun Mar 29 2020 22:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53005 * 109.46935 * 2 1 4 4 C 1.50699 * 109.46822 * 119.99666 * 2 1 3 5 5 N 1.30007 * 127.33850 * 299.95926 * 4 2 1 6 6 O 1.20662 * 112.30292 * 180.02562 * 5 4 2 7 7 C 1.33496 * 113.15666 * 359.97438 * 6 5 4 8 8 C 1.37365 * 106.33906 * 0.02562 * 7 6 5 9 9 C 1.47393 * 128.56244 * 180.25792 * 8 7 6 10 10 O 1.21604 * 120.00112 * 179.67417 * 9 8 7 11 11 N 1.34774 * 120.00157 * 359.68104 * 9 8 7 12 12 C 1.46509 * 120.00242 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.47200 * 179.97438 * 12 11 9 14 14 H 1.07998 * 119.99923 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99994 * 179.97438 * 13 12 11 16 16 N 1.31507 * 119.99669 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99850 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46911 * 90.00176 * 17 15 13 19 19 H 1.48498 * 109.46853 * 209.99801 * 17 15 13 20 20 H 1.48496 * 109.47332 * 330.00081 * 17 15 13 21 21 H 1.08997 * 109.46657 * 300.00064 * 1 2 3 22 22 H 1.09003 * 109.46673 * 59.99883 * 1 2 3 23 23 H 1.08997 * 109.46961 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47112 * 240.00216 * 2 1 3 25 25 H 1.08997 * 109.47045 * 60.00174 * 3 2 1 26 26 H 1.09002 * 109.46740 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.47084 * 299.99872 * 3 2 1 28 28 H 1.07998 * 126.83144 * 179.97438 * 7 6 5 29 29 H 0.97003 * 120.00374 * 359.97438 * 11 9 8 30 30 H 1.09004 * 109.46483 * 299.99809 * 12 11 9 31 31 H 1.09001 * 109.47015 * 59.99781 * 12 11 9 32 32 H 0.97003 * 119.99914 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.8085 -0.3925 2.4711 6 8 2.3446 -1.1503 3.2419 7 6 3.0296 -2.1209 2.6330 8 6 2.8806 -1.9110 1.2836 9 6 3.4296 -2.6985 0.1652 10 8 3.1924 -2.3724 -0.9821 11 7 4.1944 -3.7799 0.4139 12 6 4.7397 -4.5630 -0.6979 13 6 5.5529 -5.7091 -0.1537 14 1 5.6538 -5.8409 0.9134 15 6 6.1680 -6.5896 -1.0183 16 7 6.0446 -6.4294 -2.3178 17 14 7.1766 -8.0099 -0.3438 18 1 6.3002 -9.1940 -0.1561 19 1 8.2622 -8.3441 -1.3003 20 1 7.7689 -7.6206 0.9610 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1301 1.4425 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 3.5902 -2.9131 3.1069 29 1 4.3840 -4.0399 1.3290 30 1 3.9214 -4.9528 -1.3033 31 1 5.3757 -3.9265 -1.3130 32 1 6.4776 -7.0486 -2.9261 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348294394.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:56 Heat of formation + Delta-G solvation = 2.347505 kcal Electronic energy + Delta-G solvation = -16517.773222 eV Core-core repulsion = 13674.132143 eV Total energy + Delta-G solvation = -2843.641079 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.78597 -38.78071 -36.20234 -34.29835 -32.81880 -32.06087 -31.47475 -27.51239 -27.16756 -24.58157 -23.51585 -22.35266 -20.28413 -19.65695 -18.20074 -17.56266 -16.68009 -15.72000 -15.34125 -14.72194 -14.67379 -14.34781 -14.13475 -13.43670 -13.28053 -12.90063 -12.24113 -12.05621 -11.95472 -11.70956 -11.33385 -11.30962 -11.02055 -10.94583 -10.73189 -10.37596 -9.82228 -9.58547 -9.48000 -9.35934 -8.81623 -8.01900 -6.22892 -4.30534 1.26035 1.93282 3.09150 3.20637 3.27104 3.29095 3.74391 3.86067 4.16749 4.31367 4.38777 4.99307 5.11162 5.13682 5.14240 5.21912 5.46006 5.58013 5.60838 5.79520 5.80065 5.94946 6.07422 6.21094 6.43499 7.20286 7.26580 7.42269 7.56847 7.88499 8.28285 8.47336 8.67577 8.92338 9.36090 10.87272 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.040280 B = 0.005187 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.975349 B = 5397.029309 C = 5900.932053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.027 4.027 3 C -0.141 4.141 4 C 0.074 3.926 5 N -0.361 5.361 6 O 0.091 5.909 7 C -0.019 4.019 8 C -0.238 4.238 9 C 0.575 3.425 10 O -0.542 6.542 11 N -0.702 5.702 12 C 0.250 3.750 13 C -0.546 4.546 14 H 0.064 0.936 15 C 0.065 3.935 16 N -0.884 5.884 17 Si 0.905 3.095 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.272 1.272 21 H 0.056 0.944 22 H 0.065 0.935 23 H 0.056 0.944 24 H 0.116 0.884 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.226 0.774 29 H 0.389 0.611 30 H 0.030 0.970 31 H 0.030 0.970 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.723 9.616 8.720 14.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.046 4.046 3 C -0.198 4.198 4 C -0.089 4.089 5 N -0.068 5.068 6 O 0.031 5.969 7 C -0.101 4.101 8 C -0.246 4.246 9 C 0.360 3.640 10 O -0.422 6.422 11 N -0.349 5.349 12 C 0.130 3.870 13 C -0.584 4.584 14 H 0.082 0.918 15 C -0.139 4.139 16 N -0.521 5.521 17 Si 0.732 3.268 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 H 0.075 0.925 22 H 0.084 0.916 23 H 0.076 0.924 24 H 0.134 0.866 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.242 0.758 29 H 0.222 0.778 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.484 10.691 8.316 15.475 hybrid contribution 1.151 -1.637 0.274 2.019 sum -6.333 9.055 8.590 13.996 Atomic orbital electron populations 1.21800 0.93678 1.02245 1.02114 1.19817 0.96028 0.95625 0.93167 1.21801 1.01409 0.94514 1.02118 1.24805 0.96586 0.93874 0.93626 1.73561 1.17175 1.14093 1.01983 1.84536 1.48663 1.29740 1.33941 1.26407 0.96944 0.94487 0.92270 1.22743 1.06710 1.00575 0.94546 1.16927 0.79497 0.80842 0.86773 1.90728 1.60301 1.69712 1.21438 1.46362 1.49511 1.27149 1.11904 1.19193 0.93965 0.89624 0.84237 1.21187 1.32554 1.11290 0.93411 0.91828 1.24943 0.96271 0.97978 0.94714 1.69967 1.43129 1.37265 1.01766 0.86398 0.79683 0.81963 0.78777 1.20414 1.20959 1.19711 0.92481 0.91644 0.92440 0.86644 0.92477 0.92444 0.91643 0.75819 0.77799 0.95160 0.95157 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.18 37.16 0.34 -1.36 16 2 C -0.03 -0.39 3.33 -91.76 -0.31 -0.69 16 3 C -0.14 -1.70 9.18 37.16 0.34 -1.36 16 4 C 0.07 1.15 6.09 -79.77 -0.49 0.66 16 5 N -0.36 -5.34 12.01 34.78 0.42 -4.92 16 6 O 0.09 1.19 11.06 18.64 0.21 1.39 16 7 C -0.02 -0.23 11.85 30.41 0.36 0.13 16 8 C -0.24 -3.82 6.47 -102.89 -0.67 -4.49 16 9 C 0.58 11.48 7.81 -12.54 -0.10 11.38 16 10 O -0.54 -12.69 15.25 5.27 0.08 -12.61 16 11 N -0.70 -14.17 5.54 -62.57 -0.35 -14.51 16 12 C 0.25 6.39 5.43 -5.19 -0.03 6.36 16 13 C -0.55 -14.28 9.28 -34.44 -0.32 -14.60 16 14 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 15 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.88 -25.42 13.29 55.43 0.74 -24.69 16 17 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.12 1.89 6.29 -51.93 -0.33 1.56 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.23 1.71 7.68 -52.49 -0.40 1.31 16 29 H 0.39 6.46 7.51 -40.82 -0.31 6.16 16 30 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 284.60 15.07 4.29 4.29 Total: -1.00 -31.32 284.60 -4.55 -35.87 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -3.95 Total: 2.25 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -0.96 Total: -2.31 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 0.81 Total: -44.12 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.29 Total: -11.22 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.32 -4.55 -35.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348294394.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.215 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds