Wall clock time and date at job start Sun Mar 29 2020 22:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53005 * 109.46935 * 2 1 4 4 C 1.50699 * 109.46822 * 119.99666 * 2 1 3 5 5 N 1.30007 * 127.33850 * 299.95926 * 4 2 1 6 6 O 1.20662 * 112.30292 * 180.02562 * 5 4 2 7 7 C 1.33496 * 113.15666 * 359.97438 * 6 5 4 8 8 C 1.37365 * 106.33906 * 0.02562 * 7 6 5 9 9 C 1.47393 * 128.56244 * 180.25792 * 8 7 6 10 10 O 1.21604 * 120.00112 * 179.67417 * 9 8 7 11 11 N 1.34774 * 120.00157 * 359.68104 * 9 8 7 12 12 C 1.46509 * 120.00242 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.47200 * 179.97438 * 12 11 9 14 14 H 1.07998 * 119.99923 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99994 * 179.97438 * 13 12 11 16 16 N 1.31507 * 119.99669 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99850 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46911 * 90.00176 * 17 15 13 19 19 H 1.48498 * 109.46853 * 209.99801 * 17 15 13 20 20 H 1.48496 * 109.47332 * 330.00081 * 17 15 13 21 21 H 1.08997 * 109.46657 * 300.00064 * 1 2 3 22 22 H 1.09003 * 109.46673 * 59.99883 * 1 2 3 23 23 H 1.08997 * 109.46961 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47112 * 240.00216 * 2 1 3 25 25 H 1.08997 * 109.47045 * 60.00174 * 3 2 1 26 26 H 1.09002 * 109.46740 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.47084 * 299.99872 * 3 2 1 28 28 H 1.07998 * 126.83144 * 179.97438 * 7 6 5 29 29 H 0.97003 * 120.00374 * 359.97438 * 11 9 8 30 30 H 1.09004 * 109.46483 * 299.99809 * 12 11 9 31 31 H 1.09001 * 109.47015 * 59.99781 * 12 11 9 32 32 H 0.97003 * 119.99914 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.8085 -0.3925 2.4711 6 8 2.3446 -1.1503 3.2419 7 6 3.0296 -2.1209 2.6330 8 6 2.8806 -1.9110 1.2836 9 6 3.4296 -2.6985 0.1652 10 8 3.1924 -2.3724 -0.9821 11 7 4.1944 -3.7799 0.4139 12 6 4.7397 -4.5630 -0.6979 13 6 5.5529 -5.7091 -0.1537 14 1 5.6538 -5.8409 0.9134 15 6 6.1680 -6.5896 -1.0183 16 7 6.0446 -6.4294 -2.3178 17 14 7.1766 -8.0099 -0.3438 18 1 6.3002 -9.1940 -0.1561 19 1 8.2622 -8.3441 -1.3003 20 1 7.7689 -7.6206 0.9610 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1301 1.4425 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 3.5902 -2.9131 3.1069 29 1 4.3840 -4.0399 1.3290 30 1 3.9214 -4.9528 -1.3033 31 1 5.3757 -3.9265 -1.3130 32 1 6.4776 -7.0486 -2.9261 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348294394.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:55 Heat of formation + Delta-G solvation = -19.633083 kcal Electronic energy + Delta-G solvation = -16518.726372 eV Core-core repulsion = 13674.132143 eV Total energy + Delta-G solvation = -2844.594229 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.94096 -40.43871 -37.31861 -36.15919 -34.55463 -33.47882 -32.64464 -29.43998 -28.13801 -26.13488 -24.60503 -24.15481 -21.76775 -20.85493 -19.68158 -18.70236 -18.27259 -17.33215 -17.06165 -16.31527 -16.09259 -15.78572 -15.48056 -14.79470 -14.35957 -14.29647 -13.97562 -13.96781 -13.16285 -12.99060 -12.76964 -12.70626 -12.33592 -12.33548 -12.21611 -11.86285 -11.48144 -11.01991 -10.97237 -10.80539 -10.76384 -9.89187 -8.28087 -6.44584 0.10951 0.73830 1.46161 1.48071 1.59092 1.97168 2.21298 2.33915 2.52379 2.99474 3.07869 3.26047 3.83954 4.03137 4.11421 4.12294 4.21092 4.57051 4.69346 4.71149 4.83782 4.90560 5.07000 5.11654 5.23038 5.23497 5.33417 5.44692 5.64767 5.83459 6.64206 6.79661 7.19760 7.22050 7.37394 8.84154 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.040280 B = 0.005187 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.975349 B = 5397.029309 C = 5900.932053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.034 4.034 3 C -0.134 4.134 4 C 0.064 3.936 5 N -0.367 5.367 6 O 0.102 5.898 7 C 0.032 3.968 8 C -0.281 4.281 9 C 0.578 3.422 10 O -0.587 6.587 11 N -0.694 5.694 12 C 0.267 3.733 13 C -0.555 4.555 14 H 0.089 0.911 15 C 0.005 3.995 16 N -0.931 5.931 17 Si 0.984 3.016 18 H -0.272 1.272 19 H -0.287 1.287 20 H -0.253 1.253 21 H 0.064 0.936 22 H 0.083 0.917 23 H 0.045 0.955 24 H 0.086 0.914 25 H 0.064 0.936 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.275 0.725 29 H 0.410 0.590 30 H -0.008 1.008 31 H -0.008 1.008 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.461 9.290 11.592 16.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.054 4.054 3 C -0.192 4.192 4 C -0.098 4.098 5 N -0.074 5.074 6 O 0.043 5.957 7 C -0.050 4.050 8 C -0.289 4.289 9 C 0.365 3.635 10 O -0.469 6.469 11 N -0.343 5.343 12 C 0.144 3.856 13 C -0.593 4.593 14 H 0.107 0.893 15 C -0.195 4.195 16 N -0.570 5.570 17 Si 0.807 3.193 18 H -0.197 1.197 19 H -0.213 1.213 20 H -0.177 1.177 21 H 0.083 0.917 22 H 0.102 0.898 23 H 0.064 0.936 24 H 0.104 0.896 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.102 0.898 28 H 0.291 0.709 29 H 0.246 0.754 30 H 0.010 0.990 31 H 0.010 0.990 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.239 10.391 11.253 16.941 hybrid contribution 1.031 -1.484 -0.592 1.901 sum -6.209 8.907 10.662 15.217 Atomic orbital electron populations 1.21760 0.92111 1.01899 1.03398 1.19856 0.97386 0.96393 0.91715 1.21761 1.00650 0.93359 1.03399 1.25022 0.96581 0.93905 0.94310 1.73569 1.17724 1.14630 1.01476 1.84543 1.48142 1.29549 1.33433 1.27177 0.93835 0.93459 0.90559 1.22302 1.09742 1.01860 0.94953 1.17359 0.78408 0.80379 0.87303 1.90705 1.61688 1.70750 1.23782 1.45981 1.49688 1.27014 1.11631 1.18631 0.92159 0.89591 0.85176 1.21607 1.32024 1.10967 0.94683 0.89332 1.26039 0.97502 1.01109 0.94819 1.70133 1.44534 1.38734 1.03573 0.85162 0.77630 0.77932 0.78536 1.19710 1.21267 1.17665 0.91700 0.89805 0.93579 0.89591 0.91701 0.93562 0.89805 0.70947 0.75359 0.99016 0.99004 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 9.18 71.99 0.66 -2.50 16 2 C -0.03 -0.97 3.33 -11.54 -0.04 -1.01 16 3 C -0.13 -3.16 9.18 71.98 0.66 -2.50 16 4 C 0.06 1.95 6.09 45.16 0.28 2.23 16 5 N -0.37 -10.09 12.01 -44.78 -0.54 -10.63 16 6 O 0.10 2.33 11.06 76.96 0.85 3.18 16 7 C 0.03 0.65 11.85 67.61 0.80 1.45 16 8 C -0.28 -8.70 6.47 -18.74 -0.12 -8.82 16 9 C 0.58 23.47 7.81 86.65 0.68 24.15 16 10 O -0.59 -29.00 15.25 -4.04 -0.06 -29.06 16 11 N -0.69 -27.96 5.54 -470.13 -2.61 -30.57 16 12 C 0.27 14.11 5.43 85.63 0.46 14.57 16 13 C -0.56 -28.81 9.28 25.60 0.24 -28.58 16 14 H 0.09 4.05 7.60 -2.91 -0.02 4.03 16 15 C 0.01 0.27 5.46 84.66 0.46 0.73 16 16 N -0.93 -54.91 13.29 21.45 0.28 -54.62 16 17 Si 0.98 40.81 29.54 68.60 2.03 42.84 16 18 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 19 H -0.29 -11.94 7.11 99.48 0.71 -11.24 16 20 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 21 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.09 2.98 6.29 -2.39 -0.02 2.96 16 25 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.28 2.60 7.68 -2.91 -0.02 2.58 16 29 H 0.41 12.71 7.51 -92.71 -0.70 12.02 16 30 H -0.01 -0.49 8.14 -2.38 -0.02 -0.50 16 31 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 32 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -71.06 284.60 4.47 -66.58 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.44 Total: 12.55 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 4.08 Total: -0.27 kcal Atomic # 7 Polarization: -92.96 SS G_CDS: -2.86 Total: -95.82 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: 0.79 Total: -25.88 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -71.06 4.47 -66.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348294394.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.948 kcal (2) G-P(sol) polarization free energy of solvation -71.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds