Wall clock time and date at job start Sun Mar 29 2020 22:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41381 * 126.80079 * 2 1 4 4 C 1.35446 * 103.98388 * 179.97438 * 3 2 1 5 5 C 1.50709 * 126.77613 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.46798 * 90.00130 * 5 4 3 7 7 C 1.47962 * 110.99645 * 170.00157 * 6 5 4 8 8 C 1.53939 * 86.17954 * 222.41370 * 7 6 5 9 9 O 1.42901 * 113.73443 * 269.25769 * 8 7 6 10 10 C 1.50699 * 113.73181 * 138.07765 * 8 7 6 11 11 H 1.07999 * 120.00015 * 4.91121 * 10 8 7 12 12 C 1.37879 * 119.99686 * 184.90847 * 10 8 7 13 13 N 1.31521 * 119.99972 * 13.82310 * 12 10 8 14 14 Si 1.86792 * 119.99875 * 193.81760 * 12 10 8 15 15 H 1.48504 * 109.47216 * 180.02562 * 14 12 10 16 16 H 1.48504 * 109.47601 * 300.00327 * 14 12 10 17 17 H 1.48506 * 109.47155 * 60.00602 * 14 12 10 18 18 C 1.47957 * 111.00157 * 70.64161 * 6 5 4 19 19 O 1.34039 * 106.45002 * 0.23811 * 4 3 2 20 20 N 1.20922 * 111.56309 * 359.56524 * 19 4 3 21 21 H 1.09002 * 109.46729 * 90.00317 * 1 2 3 22 22 H 1.08994 * 109.47032 * 210.00465 * 1 2 3 23 23 H 1.08998 * 109.47391 * 330.00439 * 1 2 3 24 24 H 1.07994 * 128.00770 * 359.95503 * 3 2 1 25 25 H 1.08996 * 109.47024 * 329.99730 * 5 4 3 26 26 H 1.08995 * 109.46678 * 209.99813 * 5 4 3 27 27 H 1.08999 * 113.76019 * 108.09949 * 7 6 5 28 28 H 1.09000 * 113.75802 * 336.73263 * 7 6 5 29 29 H 0.96693 * 113.99776 * 171.47023 * 9 8 7 30 30 H 0.97001 * 119.99982 * 5.87544 * 13 12 10 31 31 H 1.08994 * 113.76072 * 23.25977 * 18 6 5 32 32 H 1.09001 * 113.75391 * 251.89917 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1321 0.0000 4 6 3.6024 0.6068 0.0006 5 6 4.9022 1.3696 0.0003 6 7 5.3242 1.6183 1.3852 7 6 6.7042 2.1501 1.4316 8 6 6.9217 1.1968 2.6205 9 8 6.6296 1.7845 3.8899 10 6 8.2509 0.4872 2.5936 11 1 8.9774 0.7302 1.8325 12 6 8.5393 -0.4723 3.5409 13 7 7.5785 -0.9644 4.2922 14 14 10.2947 -1.0733 3.7570 15 1 10.3384 -2.0980 4.8310 16 1 10.7739 -1.6701 2.4844 17 1 11.1673 0.0699 4.1272 18 6 5.7638 0.3658 2.0387 19 8 3.4538 -0.7253 -0.0045 20 7 2.2869 -1.0423 0.0007 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3634 0.8900 0.5137 24 1 2.0710 2.1743 -0.0007 25 1 4.7652 2.3207 -0.5142 26 1 5.6660 0.7856 -0.5129 27 1 6.7594 3.2054 1.6991 28 1 7.3006 1.9008 0.5539 29 1 6.6384 1.1567 4.6253 30 1 6.6559 -0.7167 4.1237 31 1 6.0851 -0.4054 1.3387 32 1 5.0676 -0.0046 2.7912 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349619527.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:51 Heat of formation + Delta-G solvation = 44.853674 kcal Electronic energy + Delta-G solvation = -17026.534002 eV Core-core repulsion = 14184.736129 eV Total energy + Delta-G solvation = -2841.797873 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.70951 -39.33923 -35.03311 -34.61958 -32.42194 -32.24658 -28.63931 -28.44873 -25.68061 -25.19451 -23.04338 -22.47068 -19.89803 -18.93649 -17.94979 -17.39493 -16.90688 -15.38435 -15.02821 -14.82336 -14.37314 -13.83293 -13.61974 -13.40402 -13.10551 -12.95561 -12.82850 -12.13693 -12.07328 -11.50564 -11.12446 -11.02782 -10.90426 -10.73547 -10.34760 -10.16518 -9.87962 -9.37359 -9.15033 -8.71577 -8.48449 -7.88963 -6.57563 -4.36471 1.63662 2.36497 3.26340 3.35166 3.38513 3.56906 4.29452 4.37455 4.52540 4.60916 4.95854 5.10714 5.26398 5.32554 5.39088 5.53417 5.57469 5.63548 5.74552 5.85336 5.91595 5.95875 6.17371 6.21655 6.41836 6.67828 6.83978 7.00099 7.61424 7.80193 8.17689 8.43839 8.55976 8.99872 9.34560 10.73956 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.038992 B = 0.006036 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.920779 B = 4637.465185 C = 4877.494105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.009 3.991 3 C -0.226 4.226 4 C -0.004 4.004 5 C 0.094 3.906 6 N -0.475 5.475 7 C 0.021 3.979 8 C 0.224 3.776 9 O -0.565 6.565 10 C -0.621 4.621 11 H 0.060 0.940 12 C 0.036 3.964 13 N -0.899 5.899 14 Si 1.065 2.935 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.285 1.285 18 C -0.022 4.022 19 O 0.099 5.901 20 N -0.370 5.370 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.080 0.920 24 H 0.169 0.831 25 H 0.102 0.898 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.372 0.628 30 H 0.270 0.730 31 H 0.070 0.930 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.350 3.704 -8.518 12.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.150 4.150 3 C -0.249 4.249 4 C -0.068 4.068 5 C -0.035 4.035 6 N -0.198 5.198 7 C -0.107 4.107 8 C 0.183 3.817 9 O -0.372 6.372 10 C -0.659 4.659 11 H 0.078 0.922 12 C -0.170 4.170 13 N -0.535 5.535 14 Si 0.892 3.108 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.211 1.211 18 C -0.151 4.151 19 O 0.033 5.967 20 N -0.076 5.076 21 H 0.095 0.905 22 H 0.093 0.907 23 H 0.098 0.902 24 H 0.186 0.814 25 H 0.120 0.880 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.221 0.779 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.224 2.320 -7.703 11.505 hybrid contribution -0.515 0.836 -1.155 1.516 sum -8.739 3.156 -8.858 12.838 Atomic orbital electron populations 1.20115 0.86199 1.03631 1.02977 1.23573 0.98878 0.89097 1.03421 1.22321 0.91055 1.00897 1.10608 1.24406 0.98366 0.83333 1.00730 1.21198 0.89601 0.97623 0.95121 1.68767 1.22683 1.18217 1.10171 1.24045 0.87339 1.00684 0.98592 1.20003 0.91559 0.88590 0.81565 1.86221 1.93562 1.39902 1.17516 1.22319 1.01593 1.23706 1.18303 0.92160 1.25930 1.05781 0.93036 0.92249 1.70894 1.01189 1.41834 1.39604 0.83626 0.74168 0.76491 0.76561 1.20579 1.21249 1.21083 1.24933 0.99098 0.92230 0.98871 1.84830 1.21431 1.23054 1.67347 1.73827 0.89433 1.24294 1.20034 0.90468 0.90736 0.90158 0.81360 0.88008 0.91954 0.90031 0.90882 0.77929 0.91764 0.91133 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.47 36.01 0.38 -0.36 16 2 C 0.01 0.13 7.33 -82.10 -0.60 -0.47 16 3 C -0.23 -3.30 11.06 -39.38 -0.44 -3.73 16 4 C 0.00 -0.07 6.52 -35.30 -0.23 -0.30 16 5 C 0.09 1.50 5.39 -4.97 -0.03 1.47 16 6 N -0.47 -9.40 6.25 -239.69 -1.50 -10.90 16 7 C 0.02 0.44 7.36 -2.76 -0.02 0.42 16 8 C 0.22 5.49 1.08 -90.84 -0.10 5.39 16 9 O -0.57 -14.57 13.45 -35.23 -0.47 -15.05 16 10 C -0.62 -16.51 8.56 -34.44 -0.29 -16.81 16 11 H 0.06 1.58 7.85 -52.49 -0.41 1.17 16 12 C 0.04 0.97 5.26 -17.82 -0.09 0.87 16 13 N -0.90 -25.17 12.80 55.43 0.71 -24.46 16 14 Si 1.06 23.77 29.93 -169.99 -5.09 18.68 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 C -0.02 -0.50 5.90 -2.77 -0.02 -0.52 16 19 O 0.10 1.80 11.20 17.18 0.19 2.00 16 20 N -0.37 -6.54 12.07 33.42 0.40 -6.14 16 21 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.17 1.99 8.06 -52.49 -0.42 1.56 16 25 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.06 0.97 7.69 -51.93 -0.40 0.58 16 27 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 28 H 0.07 1.39 7.74 -51.93 -0.40 0.98 16 29 H 0.37 9.54 6.95 45.56 0.32 9.86 16 30 H 0.27 7.50 5.52 -40.82 -0.23 7.27 16 31 H 0.07 1.63 7.73 -51.93 -0.40 1.23 16 32 H 0.07 1.66 7.79 -51.93 -0.40 1.26 16 LS Contribution 276.01 15.07 4.16 4.16 Total: -1.00 -30.00 276.01 -6.30 -36.30 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -3.26 Total: 9.46 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -1.44 Total: -14.04 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: -0.39 Total: -41.50 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.28 Total: -13.05 kcal Atomic # 14 Polarization: 23.77 SS G_CDS: -5.09 Total: 18.68 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.00 -6.30 -36.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349619527.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.149 kcal (2) G-P(sol) polarization free energy of solvation -30.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds