Wall clock time and date at job start Sun Mar 29 2020 22:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41381 * 126.80079 * 2 1 4 4 C 1.35446 * 103.98388 * 179.97438 * 3 2 1 5 5 C 1.50709 * 126.77613 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.46798 * 90.00130 * 5 4 3 7 7 C 1.47962 * 110.99645 * 170.00157 * 6 5 4 8 8 C 1.53939 * 86.17954 * 222.41370 * 7 6 5 9 9 O 1.42901 * 113.73443 * 269.25769 * 8 7 6 10 10 C 1.50699 * 113.73181 * 138.07765 * 8 7 6 11 11 H 1.07999 * 120.00015 * 4.91121 * 10 8 7 12 12 C 1.37879 * 119.99686 * 184.90847 * 10 8 7 13 13 N 1.31521 * 119.99972 * 13.82310 * 12 10 8 14 14 Si 1.86792 * 119.99875 * 193.81760 * 12 10 8 15 15 H 1.48504 * 109.47216 * 180.02562 * 14 12 10 16 16 H 1.48504 * 109.47601 * 300.00327 * 14 12 10 17 17 H 1.48506 * 109.47155 * 60.00602 * 14 12 10 18 18 C 1.47957 * 111.00157 * 70.64161 * 6 5 4 19 19 O 1.34039 * 106.45002 * 0.23811 * 4 3 2 20 20 N 1.20922 * 111.56309 * 359.56524 * 19 4 3 21 21 H 1.09002 * 109.46729 * 90.00317 * 1 2 3 22 22 H 1.08994 * 109.47032 * 210.00465 * 1 2 3 23 23 H 1.08998 * 109.47391 * 330.00439 * 1 2 3 24 24 H 1.07994 * 128.00770 * 359.95503 * 3 2 1 25 25 H 1.08996 * 109.47024 * 329.99730 * 5 4 3 26 26 H 1.08995 * 109.46678 * 209.99813 * 5 4 3 27 27 H 1.08999 * 113.76019 * 108.09949 * 7 6 5 28 28 H 1.09000 * 113.75802 * 336.73263 * 7 6 5 29 29 H 0.96693 * 113.99776 * 171.47023 * 9 8 7 30 30 H 0.97001 * 119.99982 * 5.87544 * 13 12 10 31 31 H 1.08994 * 113.76072 * 23.25977 * 18 6 5 32 32 H 1.09001 * 113.75391 * 251.89917 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1321 0.0000 4 6 3.6024 0.6068 0.0006 5 6 4.9022 1.3696 0.0003 6 7 5.3242 1.6183 1.3852 7 6 6.7042 2.1501 1.4316 8 6 6.9217 1.1968 2.6205 9 8 6.6296 1.7845 3.8899 10 6 8.2509 0.4872 2.5936 11 1 8.9774 0.7302 1.8325 12 6 8.5393 -0.4723 3.5409 13 7 7.5785 -0.9644 4.2922 14 14 10.2947 -1.0733 3.7570 15 1 10.3384 -2.0980 4.8310 16 1 10.7739 -1.6701 2.4844 17 1 11.1673 0.0699 4.1272 18 6 5.7638 0.3658 2.0387 19 8 3.4538 -0.7253 -0.0045 20 7 2.2869 -1.0423 0.0007 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3634 0.8900 0.5137 24 1 2.0710 2.1743 -0.0007 25 1 4.7652 2.3207 -0.5142 26 1 5.6660 0.7856 -0.5129 27 1 6.7594 3.2054 1.6991 28 1 7.3006 1.9008 0.5539 29 1 6.6384 1.1567 4.6253 30 1 6.6559 -0.7167 4.1237 31 1 6.0851 -0.4054 1.3387 32 1 5.0676 -0.0046 2.7912 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349619527.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:51 Heat of formation + Delta-G solvation = 21.397868 kcal Electronic energy + Delta-G solvation = -17027.551122 eV Core-core repulsion = 14184.736129 eV Total energy + Delta-G solvation = -2842.814993 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.92165 -41.06121 -36.83306 -35.76071 -34.29420 -33.79621 -30.00214 -29.57979 -27.49030 -26.93978 -24.50233 -23.89681 -21.12781 -20.76044 -19.84894 -18.67251 -18.18918 -17.17736 -16.68430 -16.33819 -15.95099 -15.59942 -15.07546 -14.67242 -14.21165 -14.11336 -13.94032 -13.85201 -13.52825 -13.19961 -12.87492 -12.64380 -12.56541 -12.26991 -11.98667 -11.93948 -11.10928 -10.99891 -10.76616 -10.59965 -10.15050 -9.70825 -8.67619 -6.47864 0.38946 1.24175 1.56234 1.61010 1.82079 2.06414 2.53687 2.89349 3.02494 3.26987 3.37904 3.72596 3.91008 4.00916 4.07770 4.18801 4.27679 4.44697 4.51017 4.58933 4.67208 4.71045 4.86313 4.87132 4.89555 5.13020 5.20339 5.25088 5.78643 6.00459 6.07482 6.44394 6.97533 7.22052 7.30435 8.63529 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.038992 B = 0.006036 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.920779 B = 4637.465185 C = 4877.494105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.012 3.988 3 C -0.216 4.216 4 C -0.026 4.026 5 C 0.096 3.904 6 N -0.473 5.473 7 C 0.034 3.966 8 C 0.195 3.805 9 O -0.573 6.573 10 C -0.636 4.636 11 H 0.060 0.940 12 C -0.009 4.009 13 N -0.922 5.922 14 Si 1.110 2.890 15 H -0.286 1.286 16 H -0.270 1.270 17 H -0.272 1.272 18 C -0.008 4.008 19 O 0.064 5.936 20 N -0.403 5.403 21 H 0.099 0.901 22 H 0.073 0.927 23 H 0.103 0.897 24 H 0.200 0.800 25 H 0.140 0.860 26 H 0.065 0.935 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.367 0.633 30 H 0.261 0.739 31 H 0.059 0.941 32 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.833 4.996 -9.766 14.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.147 4.147 3 C -0.238 4.238 4 C -0.089 4.089 5 C -0.033 4.033 6 N -0.197 5.197 7 C -0.094 4.094 8 C 0.155 3.845 9 O -0.380 6.380 10 C -0.673 4.673 11 H 0.079 0.921 12 C -0.210 4.210 13 N -0.559 5.559 14 Si 0.932 3.068 15 H -0.211 1.211 16 H -0.195 1.195 17 H -0.197 1.197 18 C -0.138 4.138 19 O 0.004 5.996 20 N -0.114 5.114 21 H 0.117 0.883 22 H 0.092 0.908 23 H 0.122 0.878 24 H 0.217 0.783 25 H 0.158 0.842 26 H 0.083 0.917 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.215 0.785 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.689 3.641 -8.974 13.011 hybrid contribution -0.464 0.477 -0.805 1.045 sum -9.153 4.118 -9.779 14.013 Atomic orbital electron populations 1.20339 0.83064 1.04789 1.04740 1.24367 1.00838 0.88474 1.01013 1.22783 0.90069 1.02256 1.08715 1.24641 0.99313 0.83061 1.01909 1.21320 0.89569 0.99552 0.92855 1.68649 1.22113 1.16032 1.12862 1.23992 0.87853 1.00350 0.97191 1.20384 0.91395 0.90605 0.82150 1.86203 1.93621 1.40097 1.18039 1.22651 1.02636 1.23710 1.18352 0.92146 1.27203 1.08560 0.93185 0.92044 1.70987 1.01135 1.43051 1.40762 0.83026 0.70411 0.76362 0.77000 1.21117 1.19508 1.19729 1.24566 0.97965 0.92868 0.98384 1.84787 1.22040 1.24153 1.68623 1.73831 0.89638 1.25887 1.22057 0.88270 0.90782 0.87791 0.78257 0.84238 0.91715 0.89049 0.89164 0.78497 0.92772 0.92303 0.93587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.28 10.47 71.24 0.75 -0.53 16 2 C 0.01 0.34 7.33 43.58 0.32 0.66 16 3 C -0.22 -5.76 11.06 22.40 0.25 -5.51 16 4 C -0.03 -0.82 6.52 25.04 0.16 -0.65 16 5 C 0.10 2.86 5.39 85.56 0.46 3.32 16 6 N -0.47 -18.15 6.25 -915.44 -5.72 -23.88 16 7 C 0.03 1.35 7.36 86.41 0.64 1.98 16 8 C 0.20 9.59 1.08 -10.89 -0.01 9.58 16 9 O -0.57 -29.93 13.45 -148.98 -2.00 -31.93 16 10 C -0.64 -33.82 8.56 25.60 0.22 -33.60 16 11 H 0.06 3.13 7.85 -2.91 -0.02 3.11 16 12 C -0.01 -0.50 5.26 84.65 0.45 -0.05 16 13 N -0.92 -52.70 12.80 21.45 0.27 -52.42 16 14 Si 1.11 47.65 29.93 68.60 2.05 49.70 16 15 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 16 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 17 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 18 C -0.01 -0.37 5.90 86.41 0.51 0.14 16 19 O 0.06 2.38 11.20 71.64 0.80 3.19 16 20 N -0.40 -14.21 12.07 -49.55 -0.60 -14.80 16 21 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.10 1.36 8.14 -2.39 -0.02 1.35 16 24 H 0.20 3.88 8.06 -2.91 -0.02 3.85 16 25 H 0.14 3.13 8.14 -2.39 -0.02 3.11 16 26 H 0.06 1.93 7.69 -2.39 -0.02 1.91 16 27 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 28 H 0.09 3.23 7.74 -2.39 -0.02 3.21 16 29 H 0.37 19.45 6.95 -74.06 -0.52 18.93 16 30 H 0.26 15.01 5.52 -92.71 -0.51 14.50 16 31 H 0.06 2.81 7.73 -2.39 -0.02 2.79 16 32 H 0.05 2.30 7.79 -2.39 -0.02 2.28 16 Total: -1.00 -65.24 276.01 -0.58 -65.82 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: 0.88 Total: 29.00 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: 3.74 Total: -24.67 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -6.05 Total: -91.10 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -1.20 Total: -28.75 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.05 Total: 49.70 kcal Total: -65.24 -0.58 -65.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349619527.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.216 kcal (2) G-P(sol) polarization free energy of solvation -65.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds