Wall clock time and date at job start Sun Mar 29 2020 21:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99990 * 2 1 4 4 H 1.48502 * 109.47443 * 240.00372 * 3 2 1 5 5 H 1.48499 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47061 * 120.00316 * 3 2 1 7 7 C 1.37879 * 120.00439 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00498 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99391 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46812 * 180.02562 * 9 7 2 11 11 N 1.40604 * 119.88454 * 270.02090 * 10 9 7 12 12 C 1.36610 * 120.06048 * 148.99258 * 11 10 9 13 13 O 1.21277 * 122.37704 * 183.97412 * 12 11 10 14 14 C 1.49122 * 115.25679 * 3.95630 * 12 11 10 15 15 H 1.09004 * 110.03223 * 284.13252 * 14 12 11 16 16 C 1.51998 * 118.19098 * 157.97940 * 14 12 11 17 17 C 1.55154 * 105.03964 * 212.33596 * 16 14 12 18 18 C 1.57097 * 106.47480 * 4.36866 * 17 16 14 19 19 C 1.52843 * 101.94155 * 23.91291 * 18 17 16 20 20 H 1.09002 * 110.23853 * 74.71628 * 19 18 17 21 21 C 1.36526 * 119.87911 * 90.00435 * 10 9 7 22 22 O 1.21286 * 122.32779 * 3.83998 * 21 10 9 23 23 H 0.96996 * 119.99992 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.46930 * 60.01084 * 9 7 2 25 25 H 1.08995 * 109.47508 * 300.00654 * 9 7 2 26 26 H 0.97000 * 119.97252 * 329.02889 * 11 10 9 27 27 H 1.09003 * 110.32733 * 331.22696 * 16 14 12 28 28 H 1.09003 * 110.32720 * 93.44426 * 16 14 12 29 29 H 1.09001 * 110.08948 * 123.47988 * 17 16 14 30 30 H 1.08997 * 110.09041 * 245.06504 * 17 16 14 31 31 H 1.08997 * 110.74440 * 266.02000 * 18 17 16 32 32 H 1.09002 * 111.47115 * 142.12354 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 7 2.6587 -4.1448 -1.2196 12 6 3.9142 -4.6759 -1.3078 13 8 4.3758 -5.0817 -2.3533 14 6 4.6773 -4.7211 -0.0274 15 1 5.0434 -3.7257 0.2244 16 6 5.8205 -5.7156 0.0925 17 6 5.8393 -6.1291 1.5878 18 6 4.6074 -5.4237 2.2606 19 6 3.6794 -5.2013 1.0667 20 1 3.2154 -6.1418 0.7694 21 6 2.6450 -4.1296 1.1833 22 8 2.2266 -3.7460 2.2550 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6247 -2.5570 0.8896 26 1 2.0812 -4.1344 -1.9989 27 1 5.6340 -6.5848 -0.5384 28 1 6.7638 -5.2431 -0.1816 29 1 5.7429 -7.2110 1.6783 30 1 6.7644 -5.7946 2.0572 31 1 4.9018 -4.4725 2.7039 32 1 4.1351 -6.0676 3.0026 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352081333.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:57 Heat of formation + Delta-G solvation = -44.541105 kcal Electronic energy + Delta-G solvation = -17429.092482 eV Core-core repulsion = 14583.418160 eV Total energy + Delta-G solvation = -2845.674321 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.83729 -38.25500 -36.99792 -35.71769 -33.13502 -30.70684 -29.55898 -29.06941 -26.90773 -23.45979 -22.66581 -21.53289 -19.98188 -18.54516 -17.55576 -17.19766 -16.38012 -15.96636 -15.18409 -14.74826 -14.62699 -14.33074 -13.82881 -13.39597 -13.04530 -12.62321 -12.25414 -11.98127 -11.64316 -11.29464 -11.23661 -11.09381 -10.84705 -10.77656 -10.58868 -10.54783 -10.33343 -9.73363 -9.63762 -9.16691 -8.59678 -7.58633 -6.20389 -4.27594 2.37647 2.52143 3.13871 3.24974 3.29129 3.32823 4.01837 4.14728 4.32544 4.54131 4.59756 5.08195 5.14542 5.30291 5.32738 5.39951 5.53673 5.55083 5.78596 5.90893 6.04302 6.08007 6.22588 6.28514 6.56694 6.86700 7.14966 7.29753 7.73472 7.96457 8.10485 8.31097 8.66425 8.84446 9.38674 10.86918 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.028869 B = 0.007700 C = 0.007296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.671805 B = 3635.421005 C = 3836.578082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.902 3.098 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.059 0.941 9 C 0.247 3.753 10 N -0.408 5.408 11 N -0.517 5.517 12 C 0.538 3.462 13 O -0.531 6.531 14 C -0.123 4.123 15 H 0.111 0.889 16 C -0.098 4.098 17 C -0.123 4.123 18 C -0.098 4.098 19 C -0.121 4.121 20 H 0.106 0.894 21 C 0.530 3.470 22 O -0.510 6.510 23 H 0.267 0.733 24 H 0.039 0.961 25 H 0.064 0.936 26 H 0.419 0.581 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.213 -10.733 1.174 13.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.576 4.576 8 H 0.078 0.922 9 C 0.129 3.871 10 N -0.236 5.236 11 N -0.266 5.266 12 C 0.325 3.675 13 O -0.405 6.405 14 C -0.145 4.145 15 H 0.129 0.871 16 C -0.136 4.136 17 C -0.160 4.160 18 C -0.136 4.136 19 C -0.143 4.143 20 H 0.124 0.876 21 C 0.317 3.683 22 O -0.382 6.382 23 H 0.077 0.923 24 H 0.057 0.943 25 H 0.082 0.918 26 H 0.262 0.738 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.161 -10.606 1.353 13.451 hybrid contribution 0.023 1.196 -0.533 1.309 sum 8.183 -9.411 0.821 12.498 Atomic orbital electron populations 1.69900 1.06014 1.27610 1.49467 1.24921 0.94940 0.99355 0.94571 0.86489 0.79531 0.82263 0.78805 1.20119 1.20977 1.19977 1.21345 0.93479 0.90302 1.52495 0.92231 1.19714 0.86695 0.81077 0.99576 1.48737 1.45969 1.34136 0.94785 1.45785 1.14760 1.60429 1.05664 1.20257 0.80268 0.76785 0.90213 1.90738 1.67856 1.49362 1.32567 1.21751 0.96451 1.03324 0.92948 0.87065 1.21652 0.96917 0.98329 0.96736 1.22902 0.98274 1.00438 0.94432 1.22214 0.94074 1.01786 0.95495 1.22087 0.95267 0.99037 0.97908 0.87628 1.20054 0.82838 0.82705 0.82722 1.90731 1.59343 1.62372 1.25781 0.92319 0.94281 0.91836 0.73802 0.90637 0.90677 0.91272 0.91148 0.90315 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.35 13.29 55.43 0.74 -24.61 16 2 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.54 -14.58 9.39 -34.44 -0.32 -14.90 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.25 6.07 5.55 -5.19 -0.03 6.04 16 10 N -0.41 -8.37 3.41 -61.48 -0.21 -8.58 16 11 N -0.52 -9.14 6.26 31.15 0.19 -8.95 16 12 C 0.54 9.12 7.69 -10.90 -0.08 9.04 16 13 O -0.53 -9.96 17.66 5.56 0.10 -9.86 16 14 C -0.12 -1.81 2.41 -91.61 -0.22 -2.03 16 15 H 0.11 1.73 8.11 -51.93 -0.42 1.31 16 16 C -0.10 -1.12 6.32 -26.10 -0.16 -1.29 16 17 C -0.12 -1.19 6.93 -23.37 -0.16 -1.35 16 18 C -0.10 -1.19 6.42 -24.59 -0.16 -1.35 16 19 C -0.12 -1.79 2.51 -91.05 -0.23 -2.02 16 20 H 0.11 1.40 8.13 -51.93 -0.42 0.98 16 21 C 0.53 10.48 7.28 -10.81 -0.08 10.40 16 22 O -0.51 -11.84 16.68 5.55 0.09 -11.75 16 23 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 24 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.06 1.72 7.49 -51.93 -0.39 1.33 16 26 H 0.42 6.77 8.94 -182.21 -1.63 5.14 16 27 H 0.07 0.86 8.05 -51.93 -0.42 0.44 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 273.80 15.07 4.13 4.13 Total: -1.00 -30.90 273.80 -6.89 -37.79 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -5.36 Total: 1.36 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -1.55 Total: 4.25 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.72 Total: -42.14 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: 0.19 Total: -21.61 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.90 -6.89 -37.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352081333.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.748 kcal (2) G-P(sol) polarization free energy of solvation -30.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds