Wall clock time and date at job start Sun Mar 29 2020 21:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99990 * 2 1 4 4 H 1.48502 * 109.47443 * 240.00372 * 3 2 1 5 5 H 1.48499 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47061 * 120.00316 * 3 2 1 7 7 C 1.37879 * 120.00439 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00498 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99391 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46812 * 180.02562 * 9 7 2 11 11 N 1.40604 * 119.88454 * 270.02090 * 10 9 7 12 12 C 1.36610 * 120.06048 * 148.99258 * 11 10 9 13 13 O 1.21277 * 122.37704 * 183.97412 * 12 11 10 14 14 C 1.49122 * 115.25679 * 3.95630 * 12 11 10 15 15 H 1.09004 * 110.03223 * 284.13252 * 14 12 11 16 16 C 1.51998 * 118.19098 * 157.97940 * 14 12 11 17 17 C 1.55154 * 105.03964 * 212.33596 * 16 14 12 18 18 C 1.57097 * 106.47480 * 4.36866 * 17 16 14 19 19 C 1.52843 * 101.94155 * 23.91291 * 18 17 16 20 20 H 1.09002 * 110.23853 * 74.71628 * 19 18 17 21 21 C 1.36526 * 119.87911 * 90.00435 * 10 9 7 22 22 O 1.21286 * 122.32779 * 3.83998 * 21 10 9 23 23 H 0.96996 * 119.99992 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.46930 * 60.01084 * 9 7 2 25 25 H 1.08995 * 109.47508 * 300.00654 * 9 7 2 26 26 H 0.97000 * 119.97252 * 329.02889 * 11 10 9 27 27 H 1.09003 * 110.32733 * 331.22696 * 16 14 12 28 28 H 1.09003 * 110.32720 * 93.44426 * 16 14 12 29 29 H 1.09001 * 110.08948 * 123.47988 * 17 16 14 30 30 H 1.08997 * 110.09041 * 245.06504 * 17 16 14 31 31 H 1.08997 * 110.74440 * 266.02000 * 18 17 16 32 32 H 1.09002 * 111.47115 * 142.12354 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 7 2.6587 -4.1448 -1.2196 12 6 3.9142 -4.6759 -1.3078 13 8 4.3758 -5.0817 -2.3533 14 6 4.6773 -4.7211 -0.0274 15 1 5.0434 -3.7257 0.2244 16 6 5.8205 -5.7156 0.0925 17 6 5.8393 -6.1291 1.5878 18 6 4.6074 -5.4237 2.2606 19 6 3.6794 -5.2013 1.0667 20 1 3.2154 -6.1418 0.7694 21 6 2.6450 -4.1296 1.1833 22 8 2.2266 -3.7460 2.2550 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6247 -2.5570 0.8896 26 1 2.0812 -4.1344 -1.9989 27 1 5.6340 -6.5848 -0.5384 28 1 6.7638 -5.2431 -0.1816 29 1 5.7429 -7.2110 1.6783 30 1 6.7644 -5.7946 2.0572 31 1 4.9018 -4.4725 2.7039 32 1 4.1351 -6.0676 3.0026 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352081333.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:57 Heat of formation + Delta-G solvation = -65.876156 kcal Electronic energy + Delta-G solvation = -17430.017639 eV Core-core repulsion = 14583.418160 eV Total energy + Delta-G solvation = -2846.599479 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.22720 -39.81195 -38.21059 -37.34994 -35.15049 -32.42305 -30.78766 -30.15438 -28.71538 -25.25921 -23.89618 -23.05369 -21.07264 -19.83306 -19.11221 -18.79725 -18.23558 -17.48926 -16.72190 -16.39212 -16.03440 -15.77214 -15.35202 -14.59973 -14.50064 -14.15111 -13.78137 -13.50653 -13.20095 -13.09775 -12.69884 -12.37402 -12.27984 -12.17184 -12.06142 -11.94786 -11.51846 -11.38045 -11.10156 -10.80708 -10.71002 -9.27459 -8.29590 -6.45996 0.81779 1.07896 1.36505 1.38604 1.46652 1.61446 2.33306 2.64392 2.95242 3.02534 3.40102 3.52301 3.99182 4.35129 4.37186 4.40296 4.43192 4.46131 4.64785 4.86752 4.91850 5.00524 5.11918 5.18329 5.21363 5.31981 5.45429 5.56714 5.75707 5.88497 6.58120 6.60849 6.75947 7.16722 7.30052 8.76152 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.028869 B = 0.007700 C = 0.007296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.671805 B = 3635.421005 C = 3836.578082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.016 3.984 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.553 4.553 8 H 0.053 0.947 9 C 0.260 3.740 10 N -0.414 5.414 11 N -0.514 5.514 12 C 0.541 3.459 13 O -0.544 6.544 14 C -0.122 4.122 15 H 0.101 0.899 16 C -0.094 4.094 17 C -0.108 4.108 18 C -0.098 4.098 19 C -0.113 4.113 20 H 0.127 0.873 21 C 0.522 3.478 22 O -0.552 6.552 23 H 0.271 0.729 24 H 0.035 0.965 25 H 0.032 0.968 26 H 0.424 0.576 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.245 -11.605 1.173 15.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.184 4.184 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.198 1.198 7 C -0.592 4.592 8 H 0.071 0.929 9 C 0.140 3.860 10 N -0.240 5.240 11 N -0.265 5.265 12 C 0.329 3.671 13 O -0.420 6.420 14 C -0.143 4.143 15 H 0.119 0.881 16 C -0.132 4.132 17 C -0.145 4.145 18 C -0.136 4.136 19 C -0.134 4.134 20 H 0.145 0.855 21 C 0.312 3.688 22 O -0.427 6.427 23 H 0.080 0.920 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.267 0.733 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.212 -11.505 1.338 15.442 hybrid contribution -0.650 1.447 -0.562 1.683 sum 9.562 -10.058 0.776 13.900 Atomic orbital electron populations 1.69999 1.07349 1.28620 1.50042 1.25762 0.95798 1.02784 0.94053 0.85500 0.78410 0.78207 0.78952 1.19204 1.20079 1.19809 1.21599 0.93306 0.91665 1.52613 0.92896 1.19216 0.87063 0.81939 0.97790 1.48515 1.45678 1.33511 0.96329 1.45808 1.15513 1.60400 1.04748 1.20648 0.79754 0.75823 0.90861 1.90734 1.67844 1.49944 1.33444 1.21848 0.97321 1.03998 0.91137 0.88099 1.21723 0.95754 0.97465 0.98229 1.22859 0.97546 1.01534 0.92587 1.22304 0.94620 1.01855 0.94820 1.22166 0.94016 0.97600 0.99603 0.85518 1.21032 0.83019 0.83146 0.81622 1.90697 1.60834 1.63941 1.27206 0.92034 0.94724 0.95039 0.73296 0.90128 0.89526 0.88914 0.89304 0.91734 0.88992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.21 13.29 21.45 0.28 -52.93 16 2 C 0.02 0.91 5.46 84.66 0.46 1.37 16 3 Si 0.97 43.55 29.54 68.60 2.03 45.58 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 7 C -0.55 -30.62 9.39 25.60 0.24 -30.38 16 8 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 9 C 0.26 13.23 5.55 85.63 0.48 13.70 16 10 N -0.41 -17.28 3.41 -465.82 -1.59 -18.87 16 11 N -0.51 -18.10 6.26 -172.69 -1.08 -19.18 16 12 C 0.54 17.68 7.69 86.88 0.67 18.35 16 13 O -0.54 -19.58 17.66 -3.02 -0.05 -19.63 16 14 C -0.12 -3.34 2.41 -11.44 -0.03 -3.37 16 15 H 0.10 3.03 8.11 -2.38 -0.02 3.01 16 16 C -0.09 -1.82 6.32 31.00 0.20 -1.62 16 17 C -0.11 -1.64 6.93 32.77 0.23 -1.41 16 18 C -0.10 -2.14 6.42 31.98 0.21 -1.94 16 19 C -0.11 -3.14 2.51 -11.07 -0.03 -3.16 16 20 H 0.13 3.04 8.13 -2.39 -0.02 3.03 16 21 C 0.52 20.84 7.28 86.97 0.63 21.48 16 22 O -0.55 -26.32 16.68 -3.05 -0.05 -26.37 16 23 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 24 H 0.03 1.77 8.14 -2.38 -0.02 1.75 16 25 H 0.03 1.80 7.49 -2.39 -0.02 1.78 16 26 H 0.42 13.73 8.94 -212.99 -1.91 11.83 16 27 H 0.08 1.53 8.05 -2.39 -0.02 1.51 16 28 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -67.15 273.80 1.82 -65.33 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -0.77 Total: 13.05 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 3.05 Total: 13.02 kcal Atomic # 7 Polarization: -88.60 SS G_CDS: -2.38 Total: -90.98 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: -0.10 Total: -46.00 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -67.15 1.82 -65.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352081333.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.542 kcal (2) G-P(sol) polarization free energy of solvation -67.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds