Wall clock time and date at job start Sun Mar 29 2020 22:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50695 * 109.47421 * 2 1 4 4 N 1.33698 * 126.27819 * 270.30634 * 3 2 1 5 5 C 1.30611 * 108.99951 * 180.16890 * 4 3 2 6 6 O 1.33668 * 109.15305 * 359.56411 * 5 4 3 7 7 C 1.35341 * 107.68327 * 0.26824 * 6 5 4 8 8 C 1.46728 * 126.64287 * 180.02562 * 7 6 5 9 9 O 1.21679 * 119.99941 * 179.97438 * 8 7 6 10 10 N 1.34777 * 119.99790 * 359.97346 * 8 7 6 11 11 C 1.46498 * 119.99858 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.46956 * 325.00006 * 11 10 8 13 13 C 1.52999 * 109.47237 * 84.99822 * 11 10 8 14 14 C 1.50700 * 109.47137 * 205.00109 * 11 10 8 15 15 H 1.08000 * 120.00096 * 359.97438 * 14 11 10 16 16 C 1.37882 * 120.00129 * 180.02562 * 14 11 10 17 17 N 1.31510 * 119.99706 * 180.02562 * 16 14 11 18 18 Si 1.86798 * 119.99835 * 359.97438 * 16 14 11 19 19 H 1.48500 * 109.46901 * 90.00275 * 18 16 14 20 20 H 1.48498 * 109.47205 * 210.00216 * 18 16 14 21 21 H 1.48497 * 109.47136 * 330.00095 * 18 16 14 22 22 H 1.09002 * 109.47393 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46918 * 300.00208 * 1 2 3 24 24 H 1.08997 * 109.47017 * 60.00006 * 1 2 3 25 25 H 1.09004 * 109.47457 * 240.00157 * 2 1 3 26 26 H 1.09001 * 109.47453 * 120.00160 * 2 1 3 27 27 H 1.08002 * 125.42615 * 179.83678 * 5 4 3 28 28 H 0.96998 * 120.00452 * 359.97438 * 10 8 7 29 29 H 1.09007 * 109.46918 * 180.02562 * 13 11 10 30 30 H 1.08998 * 109.47003 * 299.99914 * 13 11 10 31 31 H 1.08999 * 109.46997 * 60.00209 * 13 11 10 32 32 H 0.96997 * 119.99765 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2907 2.1685 -1.0778 5 6 2.7118 3.3424 -0.6899 6 8 2.7264 3.3837 0.6461 7 6 2.3013 2.1813 1.0992 8 6 2.1571 1.7751 2.5017 9 8 1.7613 0.6571 2.7737 10 7 2.4630 2.6404 3.4887 11 6 2.3195 2.2346 4.8891 12 1 1.4600 1.5718 4.9890 13 6 3.5843 1.5011 5.3397 14 6 2.1144 3.4561 5.7475 15 1 2.0935 4.4367 5.2953 16 6 1.9546 3.3220 7.1105 17 7 1.7751 4.3880 7.8594 18 14 1.9915 1.6262 7.8927 19 1 3.3862 1.2869 8.2734 20 1 1.1327 1.6210 9.1042 21 1 1.4850 0.6224 6.9227 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 2.9982 4.1525 -1.3443 28 1 2.7788 3.5315 3.2720 29 1 3.4773 1.1988 6.3815 30 1 3.7326 0.6176 4.7188 31 1 4.4438 2.1639 5.2397 32 1 1.6623 4.2937 8.8182 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353550010.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:40 Heat of formation + Delta-G solvation = -18.759602 kcal Electronic energy + Delta-G solvation = -16924.515552 eV Core-core repulsion = 14079.959200 eV Total energy + Delta-G solvation = -2844.556352 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.37432 -39.04503 -35.85711 -34.97295 -32.87465 -32.46643 -30.49242 -29.03433 -25.29693 -24.53599 -23.52626 -21.85303 -20.60421 -19.88562 -18.27126 -16.82780 -16.68191 -16.08622 -15.69382 -14.78190 -14.62554 -14.13160 -13.96845 -13.34010 -13.26538 -12.97875 -12.63648 -12.26379 -11.93779 -11.48791 -11.38720 -11.08693 -10.99840 -10.85920 -10.78419 -10.25221 -9.85384 -9.47908 -9.31983 -8.93477 -8.80675 -8.29319 -6.25756 -4.29363 0.97088 2.47966 2.59819 3.19724 3.32140 3.35340 3.46314 3.76063 4.05768 4.26836 4.74157 5.00090 5.08543 5.41239 5.43663 5.48715 5.59160 5.78493 5.99456 6.13625 6.23238 6.28109 6.28900 6.38384 6.46673 6.74931 7.05398 7.12913 7.40168 7.55578 8.01962 8.38792 8.58879 8.74639 9.33501 10.86323 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.036305 B = 0.006511 C = 0.005911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.065696 B = 4299.480818 C = 4735.677801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.049 4.049 3 C 0.066 3.934 4 N -0.493 5.493 5 C 0.187 3.813 6 O -0.189 6.189 7 C -0.095 4.095 8 C 0.593 3.407 9 O -0.526 6.526 10 N -0.684 5.684 11 C 0.236 3.764 12 H 0.053 0.947 13 C -0.163 4.163 14 C -0.538 4.538 15 H 0.081 0.919 16 C 0.079 3.921 17 N -0.890 5.890 18 Si 0.885 3.115 19 H -0.275 1.275 20 H -0.293 1.293 21 H -0.261 1.261 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.051 0.949 25 H 0.077 0.923 26 H 0.101 0.899 27 H 0.253 0.747 28 H 0.401 0.599 29 H 0.050 0.950 30 H 0.037 0.963 31 H 0.054 0.946 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.798 -3.968 -14.483 15.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.087 4.087 3 C -0.057 4.057 4 N -0.222 5.222 5 C -0.038 4.038 6 O -0.074 6.074 7 C -0.151 4.151 8 C 0.377 3.623 9 O -0.405 6.405 10 N -0.331 5.331 11 C 0.133 3.867 12 H 0.071 0.929 13 C -0.221 4.221 14 C -0.576 4.576 15 H 0.099 0.901 16 C -0.125 4.125 17 N -0.527 5.527 18 Si 0.715 3.285 19 H -0.202 1.202 20 H -0.220 1.220 21 H -0.186 1.186 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.095 0.905 26 H 0.119 0.881 27 H 0.269 0.731 28 H 0.235 0.765 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.436 -4.782 -14.624 15.453 hybrid contribution 0.415 0.190 0.946 1.050 sum 1.851 -4.591 -13.678 14.547 Atomic orbital electron populations 1.21634 0.93986 1.02075 1.02028 1.20116 0.96575 0.87868 1.04128 1.21994 0.99044 0.98304 0.86380 1.70278 1.16992 1.03327 1.31643 1.28227 0.98243 0.97666 0.79689 1.84523 1.64456 1.34204 1.24227 1.23415 1.10077 0.84582 0.97010 1.16449 0.79221 0.85485 0.81196 1.90811 1.48247 1.19838 1.81635 1.46199 1.63752 1.15878 1.07281 1.19227 0.94457 0.96548 0.76451 0.92903 1.22467 1.00387 0.99329 0.99888 1.21005 1.51978 0.92733 0.91904 0.90093 1.24825 0.93847 0.96950 0.96832 1.69862 1.48028 1.28808 1.05967 0.86875 0.77826 0.84857 0.78954 1.20213 1.22025 1.18562 0.91874 0.92123 0.92963 0.90475 0.88107 0.73109 0.76534 0.93157 0.94354 0.92645 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.89 37.16 0.37 -1.43 16 2 C -0.05 -0.68 5.92 -27.89 -0.17 -0.85 16 3 C 0.07 1.03 6.41 -82.46 -0.53 0.50 16 4 N -0.49 -6.89 11.26 -10.88 -0.12 -7.01 16 5 C 0.19 2.09 13.21 52.24 0.69 2.78 16 6 O -0.19 -2.68 10.57 4.42 0.05 -2.63 16 7 C -0.10 -1.59 7.18 -36.84 -0.26 -1.85 16 8 C 0.59 11.54 7.75 -12.83 -0.10 11.44 16 9 O -0.53 -11.23 14.45 5.21 0.08 -11.15 16 10 N -0.68 -13.89 5.06 -56.23 -0.28 -14.17 16 11 C 0.24 5.55 2.15 -69.08 -0.15 5.41 16 12 H 0.05 1.35 6.63 -51.93 -0.34 1.00 16 13 C -0.16 -3.56 8.96 37.16 0.33 -3.23 16 14 C -0.54 -14.43 9.31 -34.44 -0.32 -14.75 16 15 H 0.08 2.29 7.98 -52.49 -0.42 1.87 16 16 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 17 N -0.89 -26.10 13.96 55.43 0.77 -25.33 16 18 Si 0.89 21.34 24.37 -169.99 -4.14 17.20 16 19 H -0.28 -6.42 6.87 56.52 0.39 -6.03 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.26 -6.19 6.53 56.52 0.37 -5.82 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.10 1.53 6.47 -51.93 -0.34 1.19 16 27 H 0.25 1.32 8.06 -52.49 -0.42 0.89 16 28 H 0.40 7.45 8.34 -40.82 -0.34 7.11 16 29 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 274.34 15.07 4.13 4.13 Total: -1.00 -31.22 274.34 -3.50 -34.73 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -3.75 Total: 4.11 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -0.23 Total: 0.13 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: 0.37 Total: -46.51 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.12 Total: -13.79 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.14 Total: 17.20 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.22 -3.50 -34.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353550010.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.968 kcal (2) G-P(sol) polarization free energy of solvation -31.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds