Wall clock time and date at job start Sun Mar 29 2020 22:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50695 * 109.47421 * 2 1 4 4 N 1.33698 * 126.27819 * 270.30634 * 3 2 1 5 5 C 1.30611 * 108.99951 * 180.16890 * 4 3 2 6 6 O 1.33668 * 109.15305 * 359.56411 * 5 4 3 7 7 C 1.35341 * 107.68327 * 0.26824 * 6 5 4 8 8 C 1.46728 * 126.64287 * 180.02562 * 7 6 5 9 9 O 1.21679 * 119.99941 * 179.97438 * 8 7 6 10 10 N 1.34777 * 119.99790 * 359.97346 * 8 7 6 11 11 C 1.46498 * 119.99858 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.46956 * 325.00006 * 11 10 8 13 13 C 1.52999 * 109.47237 * 84.99822 * 11 10 8 14 14 C 1.50700 * 109.47137 * 205.00109 * 11 10 8 15 15 H 1.08000 * 120.00096 * 359.97438 * 14 11 10 16 16 C 1.37882 * 120.00129 * 180.02562 * 14 11 10 17 17 N 1.31510 * 119.99706 * 180.02562 * 16 14 11 18 18 Si 1.86798 * 119.99835 * 359.97438 * 16 14 11 19 19 H 1.48500 * 109.46901 * 90.00275 * 18 16 14 20 20 H 1.48498 * 109.47205 * 210.00216 * 18 16 14 21 21 H 1.48497 * 109.47136 * 330.00095 * 18 16 14 22 22 H 1.09002 * 109.47393 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46918 * 300.00208 * 1 2 3 24 24 H 1.08997 * 109.47017 * 60.00006 * 1 2 3 25 25 H 1.09004 * 109.47457 * 240.00157 * 2 1 3 26 26 H 1.09001 * 109.47453 * 120.00160 * 2 1 3 27 27 H 1.08002 * 125.42615 * 179.83678 * 5 4 3 28 28 H 0.96998 * 120.00452 * 359.97438 * 10 8 7 29 29 H 1.09007 * 109.46918 * 180.02562 * 13 11 10 30 30 H 1.08998 * 109.47003 * 299.99914 * 13 11 10 31 31 H 1.08999 * 109.46997 * 60.00209 * 13 11 10 32 32 H 0.96997 * 119.99765 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2907 2.1685 -1.0778 5 6 2.7118 3.3424 -0.6899 6 8 2.7264 3.3837 0.6461 7 6 2.3013 2.1813 1.0992 8 6 2.1571 1.7751 2.5017 9 8 1.7613 0.6571 2.7737 10 7 2.4630 2.6404 3.4887 11 6 2.3195 2.2346 4.8891 12 1 1.4600 1.5718 4.9890 13 6 3.5843 1.5011 5.3397 14 6 2.1144 3.4561 5.7475 15 1 2.0935 4.4367 5.2953 16 6 1.9546 3.3220 7.1105 17 7 1.7751 4.3880 7.8594 18 14 1.9915 1.6262 7.8927 19 1 3.3862 1.2869 8.2734 20 1 1.1327 1.6210 9.1042 21 1 1.4850 0.6224 6.9227 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 2.9982 4.1525 -1.3443 28 1 2.7788 3.5315 3.2720 29 1 3.4773 1.1988 6.3815 30 1 3.7326 0.6176 4.7188 31 1 4.4438 2.1639 5.2397 32 1 1.6623 4.2937 8.8182 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353550010.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:39 Heat of formation + Delta-G solvation = -44.132288 kcal Electronic energy + Delta-G solvation = -16925.615794 eV Core-core repulsion = 14079.959200 eV Total energy + Delta-G solvation = -2845.656594 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.46944 -40.61333 -37.24085 -36.47682 -34.45665 -33.94565 -32.16038 -30.33848 -27.26853 -25.81296 -24.61408 -23.30708 -21.90706 -21.47205 -19.79212 -18.38123 -17.90502 -17.51167 -17.36011 -16.33142 -15.89994 -15.72596 -15.17947 -14.90581 -14.87723 -14.39759 -14.13586 -13.73443 -13.71539 -13.27248 -12.80636 -12.51202 -12.17208 -12.16573 -12.06834 -11.94548 -11.61438 -11.33356 -11.07412 -10.89435 -10.23852 -9.85934 -8.39808 -6.47291 -0.20666 1.28467 1.36547 1.41922 1.45772 1.47634 2.02454 2.25449 2.33844 2.96154 3.11570 3.63283 3.77088 4.27954 4.33252 4.40450 4.41827 4.48990 4.53461 4.64472 4.79685 4.94358 4.97959 5.09907 5.23977 5.25887 5.31876 5.37554 5.49765 6.05758 6.43988 6.53544 6.69721 7.04058 7.22569 8.75517 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.036305 B = 0.006511 C = 0.005911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.065696 B = 4299.480818 C = 4735.677801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.052 4.052 3 C 0.078 3.922 4 N -0.517 5.517 5 C 0.224 3.776 6 O -0.196 6.196 7 C -0.132 4.132 8 C 0.596 3.404 9 O -0.551 6.551 10 N -0.689 5.689 11 C 0.242 3.758 12 H 0.033 0.967 13 C -0.157 4.157 14 C -0.539 4.539 15 H 0.054 0.946 16 C 0.030 3.970 17 N -0.933 5.933 18 Si 0.940 3.060 19 H -0.258 1.258 20 H -0.291 1.291 21 H -0.257 1.257 22 H 0.082 0.918 23 H 0.035 0.965 24 H 0.060 0.940 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.311 0.689 28 H 0.407 0.593 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.477 -4.632 -16.344 17.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.090 4.090 3 C -0.046 4.046 4 N -0.246 5.246 5 C 0.000 4.000 6 O -0.082 6.082 7 C -0.188 4.188 8 C 0.382 3.618 9 O -0.432 6.432 10 N -0.336 5.336 11 C 0.138 3.862 12 H 0.051 0.949 13 C -0.215 4.215 14 C -0.577 4.577 15 H 0.072 0.928 16 C -0.170 4.170 17 N -0.571 5.571 18 Si 0.767 3.233 19 H -0.184 1.184 20 H -0.219 1.219 21 H -0.181 1.181 22 H 0.101 0.899 23 H 0.054 0.946 24 H 0.079 0.921 25 H 0.116 0.884 26 H 0.103 0.897 27 H 0.326 0.674 28 H 0.242 0.758 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.125 -5.449 -16.517 17.521 hybrid contribution 0.198 0.516 1.322 1.433 sum 2.322 -4.933 -15.194 16.143 Atomic orbital electron populations 1.21587 0.93256 1.03152 1.01124 1.20187 0.97145 0.87352 1.04326 1.22276 0.97107 0.98705 0.86474 1.70358 1.18829 1.04415 1.31011 1.29646 0.93695 0.97829 0.78856 1.84522 1.64777 1.33214 1.25693 1.22736 1.14087 0.86236 0.95693 1.16652 0.78104 0.84880 0.82181 1.90783 1.49135 1.20760 1.82559 1.46006 1.64685 1.16563 1.06359 1.18902 0.94673 0.94754 0.77848 0.94888 1.22363 0.99600 0.99798 0.99718 1.21211 1.51123 0.92916 0.92442 0.92813 1.25582 0.93611 1.00374 0.97465 1.69974 1.49718 1.30982 1.06459 0.85982 0.78728 0.80600 0.78013 1.18354 1.21871 1.18128 0.89905 0.94612 0.92106 0.88386 0.89695 0.67409 0.75762 0.93581 0.93040 0.91733 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 9.89 71.98 0.71 -2.57 16 2 C -0.05 -1.39 5.92 29.85 0.18 -1.21 16 3 C 0.08 2.29 6.41 41.83 0.27 2.55 16 4 N -0.52 -12.93 11.26 -303.13 -3.41 -16.34 16 5 C 0.22 4.16 13.21 130.42 1.72 5.89 16 6 O -0.20 -5.14 10.57 -7.09 -0.07 -5.22 16 7 C -0.13 -4.29 7.18 24.05 0.17 -4.12 16 8 C 0.60 23.24 7.75 86.46 0.67 23.91 16 9 O -0.55 -23.74 14.45 -4.28 -0.06 -23.81 16 10 N -0.69 -28.13 5.06 -450.04 -2.28 -30.41 16 11 C 0.24 11.44 2.15 44.25 0.10 11.54 16 12 H 0.03 1.70 6.63 -2.39 -0.02 1.69 16 13 C -0.16 -6.70 8.96 71.98 0.65 -6.05 16 14 C -0.54 -29.41 9.31 25.60 0.24 -29.18 16 15 H 0.05 3.15 7.98 -2.91 -0.02 3.13 16 16 C 0.03 1.67 5.45 84.66 0.46 2.13 16 17 N -0.93 -55.66 13.96 21.45 0.30 -55.36 16 18 Si 0.94 43.81 24.37 68.60 1.67 45.48 16 19 H -0.26 -11.25 6.87 99.48 0.68 -10.56 16 20 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 21 H -0.26 -11.73 6.53 99.48 0.65 -11.08 16 22 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 26 H 0.08 2.54 6.47 -2.39 -0.02 2.53 16 27 H 0.31 1.42 8.06 -2.91 -0.02 1.40 16 28 H 0.41 15.30 8.34 -92.71 -0.77 14.52 16 29 H 0.05 1.99 3.27 -2.38 -0.01 1.98 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -68.33 274.34 1.60 -66.73 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.29 Total: 16.04 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 5.16 Total: 2.89 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -5.39 Total: -102.11 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -0.14 Total: -29.03 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.67 Total: 45.48 kcal Total: -68.33 1.60 -66.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353550010.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.596 kcal (2) G-P(sol) polarization free energy of solvation -68.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds