Wall clock time and date at job start Sun Mar 29 2020 22:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47295 * 2 1 4 4 C 1.50694 * 109.46922 * 239.99487 * 2 1 3 5 5 H 1.07996 * 119.99954 * 239.99927 * 4 2 1 6 6 C 1.37877 * 120.00206 * 60.00552 * 4 2 1 7 7 N 1.31523 * 119.99721 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00277 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47494 * 59.99674 * 8 6 4 10 10 H 1.48508 * 109.47260 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47022 * 299.99414 * 8 6 4 12 12 C 1.53003 * 109.46745 * 119.99496 * 2 1 3 13 13 N 1.46491 * 109.47438 * 300.00122 * 12 2 1 14 14 C 1.34783 * 119.99898 * 179.97438 * 13 12 2 15 15 O 1.21683 * 120.00090 * 0.02562 * 14 13 12 16 16 C 1.46725 * 119.99562 * 179.97438 * 14 13 12 17 17 C 1.36344 * 126.63753 * 179.97438 * 16 14 13 18 18 N 1.33698 * 107.44973 * 179.74164 * 17 16 14 19 19 C 1.30615 * 108.99562 * 0.24745 * 18 17 16 20 20 O 1.33670 * 109.15519 * 359.97438 * 19 18 17 21 21 H 1.09003 * 109.46988 * 300.00277 * 1 2 3 22 22 H 1.09002 * 109.46883 * 60.00149 * 1 2 3 23 23 H 1.08999 * 109.47412 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47405 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47034 * 299.99759 * 3 2 1 26 26 H 1.09006 * 109.47582 * 59.99473 * 3 2 1 27 27 H 0.96997 * 119.99392 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.46699 * 179.97438 * 12 2 1 29 29 H 1.09001 * 109.46804 * 60.00229 * 12 2 1 30 30 H 0.97000 * 120.00053 * 0.02562 * 13 12 2 31 31 H 1.08002 * 126.27901 * 0.02562 * 17 16 14 32 32 H 1.07996 * 125.42194 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1198 -4.0078 9 1 1.8280 -2.5201 -4.0080 10 1 1.8269 -0.4202 -5.2204 11 1 3.8075 -1.1192 -4.0076 12 6 2.0399 -0.7212 1.2494 13 7 1.5516 -0.0306 2.4454 14 6 1.8767 -0.4913 3.6696 15 8 2.5763 -1.4807 3.7813 16 6 1.3880 0.2008 4.8675 17 6 1.6317 -0.1455 6.1635 18 7 1.0092 0.7467 6.9407 19 6 0.3946 1.6151 6.1829 20 8 0.6061 1.3050 4.9000 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 0.7083 1.1607 -3.4844 28 1 3.1299 -0.7216 1.2491 29 1 1.6765 -1.7488 1.2494 30 1 0.9936 0.7579 2.3564 31 1 2.2234 -0.9838 6.5006 32 1 -0.1904 2.4512 6.5366 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001468843671.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:11 Heat of formation + Delta-G solvation = -39.893730 kcal Electronic energy + Delta-G solvation = -16811.169329 eV Core-core repulsion = 13965.696533 eV Total energy + Delta-G solvation = -2845.472796 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.42761 -40.72277 -38.20044 -36.02735 -35.03449 -32.89017 -31.43908 -27.62100 -27.58892 -27.04192 -24.64246 -23.65048 -21.87500 -20.68847 -19.65505 -18.06999 -17.86396 -17.62934 -16.87042 -16.56103 -16.16016 -15.34710 -15.17623 -14.78216 -14.55584 -14.45785 -14.04656 -13.22405 -13.11044 -12.69263 -12.63139 -12.56332 -12.27644 -12.14953 -11.99204 -11.52080 -11.51184 -11.16289 -10.72984 -10.42961 -10.33086 -9.96361 -8.02138 -6.18120 -0.20932 1.43405 1.43916 1.45784 1.47460 1.53619 2.00436 2.23203 2.48933 3.21895 3.28827 3.78307 3.88491 4.35982 4.47466 4.47724 4.61076 4.68844 4.93747 5.02803 5.07358 5.16811 5.21012 5.25280 5.48959 5.64751 5.67290 6.12212 6.18537 6.31816 6.41682 6.56710 6.84948 6.97916 7.49761 8.96849 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.054252 B = 0.005314 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.983740 B = 5268.326280 C = 5593.251721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.050 3.950 3 C -0.122 4.122 4 C -0.529 4.529 5 H 0.048 0.952 6 C 0.028 3.972 7 N -0.900 5.900 8 Si 0.946 3.054 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.277 1.277 12 C 0.144 3.856 13 N -0.696 5.696 14 C 0.598 3.402 15 O -0.560 6.560 16 C -0.126 4.126 17 C 0.053 3.947 18 N -0.524 5.524 19 C 0.226 3.774 20 O -0.195 6.195 21 H 0.033 0.967 22 H 0.064 0.936 23 H 0.021 0.979 24 H 0.021 0.979 25 H 0.064 0.936 26 H 0.033 0.967 27 H 0.260 0.740 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.411 0.589 31 H 0.203 0.797 32 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.952 4.192 13.275 14.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.050 3.950 3 C -0.180 4.180 4 C -0.567 4.567 5 H 0.067 0.933 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.773 3.227 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.202 1.202 12 C 0.021 3.979 13 N -0.346 5.346 14 C 0.384 3.616 15 O -0.442 6.442 16 C -0.181 4.181 17 C -0.089 4.089 18 N -0.252 5.252 19 C 0.002 3.998 20 O -0.081 6.081 21 H 0.052 0.948 22 H 0.082 0.918 23 H 0.040 0.960 24 H 0.040 0.960 25 H 0.082 0.918 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.248 0.752 31 H 0.220 0.780 32 H 0.325 0.675 Dipole moment (debyes) X Y Z Total from point charges -2.581 3.673 13.758 14.472 hybrid contribution 0.136 -0.202 -1.764 1.781 sum -2.445 3.471 11.994 12.723 Atomic orbital electron populations 1.21692 0.97162 0.98831 1.00325 1.18375 0.93267 0.93064 0.90330 1.21690 0.98113 0.97879 1.00324 1.21221 1.31870 1.12292 0.91337 0.93348 1.25459 0.95100 0.95568 1.01017 1.69905 1.36907 1.23315 1.23698 0.85799 0.78634 0.78789 0.79466 1.20216 1.20961 1.20208 1.21467 0.97682 0.95395 0.83333 1.46093 1.51761 1.31677 1.05093 1.16675 0.80058 0.83097 0.81766 1.90843 1.40081 1.26926 1.86327 1.22877 1.04934 0.93007 0.97299 1.23781 0.98381 0.99400 0.87356 1.70502 1.13375 1.05790 1.35494 1.29702 0.96096 0.99375 0.74671 1.84534 1.53004 1.37148 1.33419 0.94801 0.91759 0.96022 0.96020 0.91765 0.94798 0.93016 0.93241 0.93249 0.75173 0.78033 0.67541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.38 8.08 71.98 0.58 -4.79 16 2 C 0.05 2.29 0.50 -52.93 -0.03 2.26 16 3 C -0.12 -5.37 8.08 71.98 0.58 -4.79 16 4 C -0.53 -27.39 8.01 25.60 0.21 -27.19 16 5 H 0.05 2.53 7.74 -2.91 -0.02 2.51 16 6 C 0.03 1.47 5.15 84.65 0.44 1.91 16 7 N -0.90 -47.39 9.35 21.45 0.20 -47.19 16 8 Si 0.95 41.95 29.54 68.60 2.03 43.98 16 9 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 12 C 0.14 5.99 4.50 86.38 0.39 6.37 16 13 N -0.70 -24.36 4.95 -467.05 -2.31 -26.68 16 14 C 0.60 20.69 7.79 86.46 0.67 21.36 16 15 O -0.56 -22.74 16.89 -4.29 -0.07 -22.81 16 16 C -0.13 -3.50 7.18 24.05 0.17 -3.32 16 17 C 0.05 1.33 11.66 83.97 0.98 2.31 16 18 N -0.52 -11.39 11.26 -315.09 -3.55 -14.94 16 19 C 0.23 3.45 13.21 130.42 1.72 5.17 16 20 O -0.19 -4.32 10.57 -7.11 -0.08 -4.39 16 21 H 0.03 1.26 6.86 -2.39 -0.02 1.24 16 22 H 0.06 3.15 6.07 -2.39 -0.01 3.13 16 23 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.06 3.14 6.07 -2.39 -0.01 3.13 16 26 H 0.03 1.26 6.86 -2.38 -0.02 1.24 16 27 H 0.26 13.26 8.31 -92.71 -0.77 12.49 16 28 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.41 13.03 5.96 -92.71 -0.55 12.47 16 31 H 0.20 4.55 8.06 -2.91 -0.02 4.53 16 32 H 0.31 0.60 8.06 -2.91 -0.02 0.58 16 Total: -1.00 -62.43 274.60 2.52 -59.90 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.59 Total: 12.84 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 5.71 Total: -0.70 kcal Atomic # 7 Polarization: -83.15 SS G_CDS: -5.66 Total: -88.81 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.15 Total: -27.21 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -62.43 2.52 -59.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001468843671.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.010 kcal (2) G-P(sol) polarization free energy of solvation -62.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds