Wall clock time and date at job start Sun Mar 29 2020 21:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00150 * 2 1 4 4 H 1.48496 * 109.47031 * 239.99783 * 3 2 1 5 5 H 1.48504 * 109.46970 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47038 * 119.99760 * 3 2 1 7 7 C 1.38945 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00273 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00001 * 359.72318 * 7 2 1 10 10 C 1.34777 * 120.00173 * 180.27893 * 9 7 2 11 11 O 1.21293 * 119.99643 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00075 * 180.02562 * 10 9 7 13 13 N 1.46498 * 109.46706 * 179.97438 * 12 10 9 14 14 C 1.34775 * 119.99630 * 179.97438 * 13 12 10 15 15 O 1.21284 * 120.00382 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00072 * 179.97438 * 14 13 12 17 17 H 1.08998 * 115.54912 * 325.72288 * 16 14 13 18 18 C 1.53005 * 117.49674 * 111.39501 * 16 14 13 19 19 C 1.52997 * 59.99894 * 107.49125 * 18 16 14 20 20 C 1.52988 * 138.59246 * 130.89466 * 19 18 16 21 21 C 1.52990 * 138.58421 * 229.11036 * 19 18 16 22 22 H 0.97004 * 119.99542 * 0.02562 * 1 2 3 23 23 H 0.97000 * 119.99687 * 0.27579 * 9 7 2 24 24 H 1.08994 * 109.46850 * 299.99690 * 12 10 9 25 25 H 1.08998 * 109.47115 * 59.99614 * 12 10 9 26 26 H 0.97002 * 120.00329 * 0.02562 * 13 12 10 27 27 H 1.08998 * 117.49415 * 214.98024 * 18 16 14 28 28 H 1.08994 * 117.49996 * 359.97438 * 18 16 14 29 29 H 1.09000 * 117.50212 * 238.38084 * 20 19 18 30 30 H 1.09005 * 117.49765 * 23.39882 * 20 19 18 31 31 H 1.09000 * 117.49948 * 336.58889 * 21 19 18 32 32 H 1.09005 * 117.49987 * 121.59585 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2124 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0068 10 6 1.9972 -3.5579 0.0130 11 8 3.2101 -3.5578 0.0135 12 6 1.2436 -4.8629 0.0193 13 7 2.1957 -5.9764 0.0247 14 6 1.7464 -7.2470 0.0314 15 8 0.5540 -7.4687 0.0325 16 6 2.7257 -8.3925 0.0364 17 1 3.6484 -8.2246 -0.5189 18 6 2.8093 -9.2449 1.3043 19 6 2.1532 -9.8113 0.0436 20 6 2.2154 -11.0780 -0.8121 21 6 0.8624 -10.5298 -0.3542 22 1 -0.4850 0.8401 -0.0004 23 1 0.3533 -2.3906 0.0068 24 1 0.6167 -4.9161 0.9093 25 1 0.6173 -4.9251 -0.8706 26 1 3.1494 -5.7991 0.0243 27 1 3.7870 -9.6379 1.5828 28 1 2.1564 -8.9769 2.1349 29 1 2.4753 -10.9624 -1.8643 30 1 2.5762 -11.9898 -0.3360 31 1 0.3330 -11.0808 0.4231 32 1 0.2319 -10.0532 -1.1050 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525372808.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:50 Heat of formation + Delta-G solvation = -40.772953 kcal Electronic energy + Delta-G solvation = -16013.042321 eV Core-core repulsion = 13167.531399 eV Total energy + Delta-G solvation = -2845.510922 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.18451 -40.10154 -38.39162 -36.25458 -35.27802 -33.58333 -33.36397 -29.55711 -26.70854 -24.56246 -23.25733 -21.53036 -21.41110 -20.30047 -19.91189 -18.47373 -17.28748 -17.08517 -16.73578 -16.37416 -15.87630 -15.85171 -15.70680 -15.21760 -15.05276 -14.02583 -13.67792 -13.55400 -13.45433 -12.91248 -12.62835 -12.48624 -12.33277 -12.14140 -11.57753 -11.19781 -11.09224 -10.94598 -10.80591 -10.57956 -10.22253 -10.10157 -8.52473 -6.03199 1.36930 1.42127 1.43708 1.53262 1.88647 1.93435 2.29748 2.74439 2.86377 3.11094 3.14508 3.34647 3.77391 3.85675 4.10474 4.20864 4.38683 4.39372 4.51673 4.63745 4.77268 4.79240 4.82649 5.03451 5.04634 5.25550 5.29979 5.36741 5.89737 6.44073 6.52604 7.01367 7.15740 7.41946 7.91840 8.64235 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.072451 B = 0.003970 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.374985 B = 7051.579527 C = 7290.827194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.010 4.010 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.340 4.340 8 H 0.087 0.913 9 N -0.559 5.559 10 C 0.432 3.568 11 O -0.623 6.623 12 C 0.122 3.878 13 N -0.705 5.705 14 C 0.536 3.464 15 O -0.577 6.577 16 C -0.151 4.151 17 H 0.145 0.855 18 C -0.085 4.085 19 C -0.223 4.223 20 C -0.104 4.104 21 C -0.132 4.132 22 H 0.280 0.720 23 H 0.399 0.601 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.415 0.585 27 H 0.136 0.864 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.122 0.878 31 H 0.104 0.896 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.701 -16.935 0.369 17.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.469 4.469 8 H 0.105 0.895 9 N -0.194 5.194 10 C 0.219 3.781 11 O -0.511 6.511 12 C -0.006 4.006 13 N -0.358 5.358 14 C 0.324 3.676 15 O -0.457 6.457 16 C -0.172 4.172 17 H 0.163 0.837 18 C -0.122 4.122 19 C -0.224 4.224 20 C -0.140 4.140 21 C -0.169 4.169 22 H 0.090 0.910 23 H 0.233 0.767 24 H 0.110 0.890 25 H 0.109 0.891 26 H 0.253 0.747 27 H 0.154 0.846 28 H 0.110 0.890 29 H 0.122 0.878 30 H 0.140 0.860 31 H 0.122 0.878 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.493 -16.886 0.366 17.247 hybrid contribution -0.050 1.341 -0.078 1.344 sum 3.442 -15.545 0.288 15.924 Atomic orbital electron populations 1.69680 1.07061 1.29762 1.49138 1.26152 0.96542 1.02744 0.95656 0.84912 0.77717 0.76108 0.79161 1.19423 1.19602 1.19409 1.19729 0.93025 0.83549 1.50609 0.89490 1.41846 1.09578 1.04625 1.63350 1.20400 0.88134 0.85887 0.83663 1.90469 1.15106 1.87523 1.58046 1.20757 0.91778 0.84081 1.04006 1.45696 1.11378 1.04415 1.74340 1.20300 0.89005 0.83348 0.74900 1.90656 1.18213 1.85245 1.51617 1.21973 1.00223 0.88275 1.06722 0.83721 1.22771 1.02871 0.97473 0.89095 1.21425 1.05476 0.92632 1.02820 1.22878 0.98206 0.93778 0.99157 1.22632 0.90333 1.01150 1.02766 0.91016 0.76732 0.88983 0.89053 0.74720 0.84575 0.88987 0.87844 0.86008 0.87782 0.90091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.90 13.05 21.66 0.28 -48.62 16 2 C -0.01 -0.53 5.50 84.92 0.47 -0.07 16 3 Si 1.00 41.71 29.55 68.60 2.03 43.74 16 4 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 6 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.34 -18.81 9.68 84.04 0.81 -18.00 16 8 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 9 N -0.56 -28.32 5.29 -306.98 -1.62 -29.94 16 10 C 0.43 20.17 7.85 87.66 0.69 20.86 16 11 O -0.62 -32.39 15.24 -3.07 -0.05 -32.44 16 12 C 0.12 4.55 6.15 85.63 0.53 5.08 16 13 N -0.70 -23.68 5.53 -466.80 -2.58 -26.26 16 14 C 0.54 17.17 7.61 87.66 0.67 17.84 16 15 O -0.58 -22.12 16.24 -3.04 -0.05 -22.17 16 16 C -0.15 -3.55 6.19 -11.54 -0.07 -3.62 16 17 H 0.15 2.76 8.14 -2.39 -0.02 2.74 16 18 C -0.09 -1.62 10.23 30.59 0.31 -1.30 16 19 C -0.22 -4.75 5.05 -52.19 -0.26 -5.01 16 20 C -0.10 -1.61 10.53 30.59 0.32 -1.29 16 21 C -0.13 -2.78 10.16 30.59 0.31 -2.47 16 22 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 23 H 0.40 19.44 7.90 -92.71 -0.73 18.71 16 24 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 25 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 26 H 0.41 13.56 7.44 -92.71 -0.69 12.87 16 27 H 0.14 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 Total: -1.00 -66.51 289.27 1.52 -64.99 By element: Atomic # 1 Polarization: 38.94 SS G_CDS: -0.27 Total: 38.67 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 3.77 Total: 12.02 kcal Atomic # 7 Polarization: -100.89 SS G_CDS: -3.92 Total: -104.81 kcal Atomic # 8 Polarization: -54.51 SS G_CDS: -0.10 Total: -54.60 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -66.51 1.52 -64.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525372808.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.219 kcal (2) G-P(sol) polarization free energy of solvation -66.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds