Wall clock time and date at job start Sun Mar 29 2020 21:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86796 * 119.99928 * 2 1 4 4 H 1.48504 * 109.47261 * 240.00149 * 3 2 1 5 5 H 1.48505 * 109.47234 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47242 * 119.99785 * 3 2 1 7 7 C 1.38950 * 120.00235 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00306 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99964 * 359.97438 * 7 2 1 10 10 C 1.34782 * 120.00335 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99395 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00019 * 180.02562 * 10 9 7 13 13 N 1.46509 * 109.46885 * 179.97438 * 12 10 9 14 14 C 1.34770 * 119.99872 * 179.97438 * 13 12 10 15 15 O 1.21283 * 120.00414 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.99962 * 180.02562 * 14 13 12 17 17 H 1.09000 * 115.55924 * 34.29352 * 16 14 13 18 18 C 1.53002 * 117.49668 * 248.60947 * 16 14 13 19 19 C 1.52993 * 60.03097 * 252.52155 * 18 16 14 20 20 C 1.52992 * 138.58906 * 229.10108 * 19 18 16 21 21 C 1.52989 * 138.58986 * 130.87830 * 19 18 16 22 22 H 0.96992 * 120.00329 * 0.02562 * 1 2 3 23 23 H 0.97001 * 120.00039 * 0.02562 * 9 7 2 24 24 H 1.08996 * 109.47416 * 59.99934 * 12 10 9 25 25 H 1.08995 * 109.46921 * 299.99472 * 12 10 9 26 26 H 0.96995 * 119.99541 * 0.02562 * 13 12 10 27 27 H 1.09002 * 117.49918 * 145.01964 * 18 16 14 28 28 H 1.09002 * 117.49754 * 0.02562 * 18 16 14 29 29 H 1.08996 * 117.49738 * 336.59046 * 20 19 18 30 30 H 1.09004 * 117.50094 * 121.61400 * 20 19 18 31 31 H 1.08998 * 117.50509 * 238.38521 * 21 19 18 32 32 H 1.09005 * 117.49848 * 23.38936 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5579 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2439 -4.8629 -0.0011 13 7 2.1959 -5.9765 -0.0016 14 6 1.7467 -7.2471 -0.0017 15 8 0.5543 -7.4688 -0.0008 16 6 2.7260 -8.3926 -0.0016 17 1 3.6491 -8.2221 0.5525 18 6 2.8090 -9.2512 -1.2653 19 6 2.1532 -9.8121 -0.0019 20 6 2.2156 -11.0750 0.8593 21 6 0.8625 -10.5286 0.3995 22 1 -0.4850 0.8399 -0.0004 23 1 0.3535 -2.3907 -0.0005 24 1 0.6175 -4.9205 -0.8913 25 1 0.6170 -4.9209 0.8886 26 1 3.1495 -5.7992 -0.0012 27 1 3.7865 -9.6456 -1.5425 28 1 2.1555 -8.9872 -2.0968 29 1 2.5761 -11.9888 0.3870 30 1 2.4760 -10.9548 1.9109 31 1 0.2326 -10.0489 1.1487 32 1 0.3325 -11.0827 -0.3753 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525372809.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:53 Heat of formation + Delta-G solvation = -18.907499 kcal Electronic energy + Delta-G solvation = -16011.718971 eV Core-core repulsion = 13167.156206 eV Total energy + Delta-G solvation = -2844.562765 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.88025 -38.38289 -37.28949 -34.42291 -33.64252 -32.67126 -31.38387 -27.95963 -24.88609 -23.32197 -22.49113 -20.37932 -19.69361 -19.03917 -18.05980 -17.13773 -15.76841 -15.53063 -15.23910 -15.06300 -14.66105 -14.57025 -14.12701 -13.70184 -13.50053 -12.53130 -12.17072 -12.05881 -11.69643 -11.63764 -11.56389 -11.10857 -10.51246 -10.32402 -10.30724 -10.19547 -10.09231 -9.63390 -9.59859 -8.77788 -8.63981 -8.10937 -6.52051 -3.94252 2.64479 3.13349 3.16221 3.21338 3.26352 3.64833 3.73716 3.79661 4.10836 4.21238 4.69972 4.76038 4.87743 5.12163 5.16414 5.35394 5.48115 5.49676 5.54420 5.58287 5.83319 5.84652 5.93963 5.95958 6.06778 6.07647 6.69500 7.45171 7.84406 7.91149 8.43531 8.49213 9.03738 9.38438 9.86426 10.64802 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.072445 B = 0.003969 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.407016 B = 7052.266712 C = 7291.371392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.597 6.597 12 C 0.109 3.891 13 N -0.704 5.704 14 C 0.538 3.462 15 O -0.544 6.544 16 C -0.138 4.138 17 H 0.125 0.875 18 C -0.100 4.100 19 C -0.201 4.201 20 C -0.131 4.131 21 C -0.114 4.114 22 H 0.275 0.725 23 H 0.396 0.604 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.411 0.589 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.794 -16.040 -0.185 16.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.436 4.436 8 H 0.123 0.877 9 N -0.183 5.183 10 C 0.213 3.787 11 O -0.484 6.484 12 C -0.018 4.018 13 N -0.358 5.358 14 C 0.323 3.677 15 O -0.422 6.422 16 C -0.159 4.159 17 H 0.143 0.857 18 C -0.137 4.137 19 C -0.202 4.202 20 C -0.168 4.168 21 C -0.150 4.150 22 H 0.085 0.915 23 H 0.230 0.770 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.249 0.751 27 H 0.124 0.876 28 H 0.120 0.880 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.590 -15.969 -0.182 16.179 hybrid contribution 0.265 1.130 0.043 1.161 sum 2.854 -14.840 -0.139 15.112 Atomic orbital electron populations 1.69604 1.06023 1.28660 1.49222 1.25328 0.95666 0.99944 0.96746 0.85865 0.78775 0.80114 0.79169 1.19759 1.20844 1.19759 1.19689 0.93453 0.82025 1.48406 0.87714 1.41791 1.09478 1.04466 1.62604 1.19748 0.88299 0.85000 0.85620 1.90494 1.13709 1.86831 1.57372 1.20947 0.91905 0.85793 1.03181 1.45658 1.11619 1.04457 1.74030 1.19613 0.88705 0.83043 0.76305 1.90673 1.16540 1.84857 1.50160 1.21960 1.00301 0.89255 1.04379 0.85743 1.22658 1.01712 0.99141 0.90231 1.21153 1.04650 0.92604 1.01796 1.22756 1.00782 0.94365 0.98915 1.22585 0.89669 1.00309 1.02470 0.91515 0.77030 0.89898 0.89897 0.75061 0.87619 0.88044 0.88457 0.88587 0.88170 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.96 13.05 55.50 0.72 -23.24 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.56 29.55 -169.99 -5.02 15.53 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 7 C -0.31 -8.36 9.68 -14.93 -0.14 -8.50 16 8 H 0.11 2.96 7.16 -52.49 -0.38 2.59 16 9 N -0.55 -13.69 5.29 -10.96 -0.06 -13.75 16 10 C 0.43 9.89 7.85 -10.99 -0.09 9.81 16 11 O -0.60 -15.37 15.24 5.55 0.08 -15.29 16 12 C 0.11 2.05 6.15 -5.19 -0.03 2.02 16 13 N -0.70 -11.99 5.53 -61.47 -0.34 -12.33 16 14 C 0.54 8.76 7.61 -10.99 -0.08 8.68 16 15 O -0.54 -10.43 16.25 5.56 0.09 -10.34 16 16 C -0.14 -1.73 6.19 -91.73 -0.57 -2.30 16 17 H 0.12 1.33 8.14 -51.93 -0.42 0.90 16 18 C -0.10 -1.07 10.23 -26.73 -0.27 -1.34 16 19 C -0.20 -2.35 5.06 -154.49 -0.78 -3.13 16 20 C -0.13 -1.21 10.53 -26.73 -0.28 -1.49 16 21 C -0.11 -1.26 10.16 -26.73 -0.27 -1.53 16 22 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 23 H 0.40 9.50 7.90 -40.82 -0.32 9.18 16 24 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 25 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 26 H 0.41 6.83 7.44 -40.82 -0.30 6.53 16 27 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 289.28 15.07 4.36 4.36 Total: -1.00 -31.15 289.28 -6.72 -37.87 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -3.94 Total: 14.38 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -2.62 Total: 2.80 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: 0.33 Total: -49.32 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: 0.17 Total: -25.63 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.15 -6.72 -37.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525372809.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.964 kcal (2) G-P(sol) polarization free energy of solvation -31.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds