Wall clock time and date at job start Sun Mar 29 2020 21:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86796 * 119.99928 * 2 1 4 4 H 1.48504 * 109.47261 * 240.00149 * 3 2 1 5 5 H 1.48505 * 109.47234 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47242 * 119.99785 * 3 2 1 7 7 C 1.38950 * 120.00235 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00306 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99964 * 359.97438 * 7 2 1 10 10 C 1.34782 * 120.00335 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99395 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00019 * 180.02562 * 10 9 7 13 13 N 1.46509 * 109.46885 * 179.97438 * 12 10 9 14 14 C 1.34770 * 119.99872 * 179.97438 * 13 12 10 15 15 O 1.21283 * 120.00414 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.99962 * 180.02562 * 14 13 12 17 17 H 1.09000 * 115.55924 * 34.29352 * 16 14 13 18 18 C 1.53002 * 117.49668 * 248.60947 * 16 14 13 19 19 C 1.52993 * 60.03097 * 252.52155 * 18 16 14 20 20 C 1.52992 * 138.58906 * 229.10108 * 19 18 16 21 21 C 1.52989 * 138.58986 * 130.87830 * 19 18 16 22 22 H 0.96992 * 120.00329 * 0.02562 * 1 2 3 23 23 H 0.97001 * 120.00039 * 0.02562 * 9 7 2 24 24 H 1.08996 * 109.47416 * 59.99934 * 12 10 9 25 25 H 1.08995 * 109.46921 * 299.99472 * 12 10 9 26 26 H 0.96995 * 119.99541 * 0.02562 * 13 12 10 27 27 H 1.09002 * 117.49918 * 145.01964 * 18 16 14 28 28 H 1.09002 * 117.49754 * 0.02562 * 18 16 14 29 29 H 1.08996 * 117.49738 * 336.59046 * 20 19 18 30 30 H 1.09004 * 117.50094 * 121.61400 * 20 19 18 31 31 H 1.08998 * 117.50509 * 238.38521 * 21 19 18 32 32 H 1.09005 * 117.49848 * 23.38936 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5579 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2439 -4.8629 -0.0011 13 7 2.1959 -5.9765 -0.0016 14 6 1.7467 -7.2471 -0.0017 15 8 0.5543 -7.4688 -0.0008 16 6 2.7260 -8.3926 -0.0016 17 1 3.6491 -8.2221 0.5525 18 6 2.8090 -9.2512 -1.2653 19 6 2.1532 -9.8121 -0.0019 20 6 2.2156 -11.0750 0.8593 21 6 0.8625 -10.5286 0.3995 22 1 -0.4850 0.8399 -0.0004 23 1 0.3535 -2.3907 -0.0005 24 1 0.6175 -4.9205 -0.8913 25 1 0.6170 -4.9209 0.8886 26 1 3.1495 -5.7992 -0.0012 27 1 3.7865 -9.6456 -1.5425 28 1 2.1555 -8.9872 -2.0968 29 1 2.5761 -11.9888 0.3870 30 1 2.4760 -10.9548 1.9109 31 1 0.2326 -10.0489 1.1487 32 1 0.3325 -11.0827 -0.3753 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525372809.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:52 Heat of formation + Delta-G solvation = -40.731358 kcal Electronic energy + Delta-G solvation = -16012.665325 eV Core-core repulsion = 13167.156206 eV Total energy + Delta-G solvation = -2845.509118 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.18336 -40.10071 -38.38946 -36.25484 -35.27793 -33.58259 -33.36420 -29.55772 -26.70858 -24.56193 -23.25744 -21.52898 -21.41093 -20.30030 -19.91257 -18.47356 -17.28757 -17.08533 -16.73537 -16.37433 -15.87571 -15.85178 -15.70710 -15.21784 -15.05172 -14.02607 -13.67802 -13.55403 -13.45420 -12.91251 -12.62845 -12.48642 -12.33293 -12.14131 -11.57762 -11.19811 -11.09020 -10.94466 -10.80662 -10.57960 -10.22271 -10.10172 -8.52449 -6.03166 1.36918 1.42137 1.43710 1.53244 1.88632 1.93423 2.29749 2.74442 2.86358 3.11123 3.14502 3.34485 3.77415 3.85694 4.10469 4.20880 4.38682 4.39385 4.51674 4.63720 4.77235 4.79242 4.82662 5.03448 5.04647 5.25516 5.29984 5.36758 5.89730 6.44107 6.52641 7.01376 7.15757 7.41954 7.91863 8.64282 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.072445 B = 0.003969 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.407016 B = 7052.266712 C = 7291.371392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.010 4.010 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.340 4.340 8 H 0.087 0.913 9 N -0.559 5.559 10 C 0.432 3.568 11 O -0.623 6.623 12 C 0.122 3.878 13 N -0.705 5.705 14 C 0.536 3.464 15 O -0.577 6.577 16 C -0.151 4.151 17 H 0.145 0.855 18 C -0.085 4.085 19 C -0.223 4.223 20 C -0.104 4.104 21 C -0.132 4.132 22 H 0.280 0.720 23 H 0.399 0.601 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.415 0.585 27 H 0.136 0.864 28 H 0.092 0.908 29 H 0.122 0.878 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.700 -16.938 -0.287 17.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.469 4.469 8 H 0.105 0.895 9 N -0.194 5.194 10 C 0.219 3.781 11 O -0.511 6.511 12 C -0.006 4.006 13 N -0.358 5.358 14 C 0.325 3.675 15 O -0.457 6.457 16 C -0.172 4.172 17 H 0.163 0.837 18 C -0.122 4.122 19 C -0.224 4.224 20 C -0.140 4.140 21 C -0.169 4.169 22 H 0.090 0.910 23 H 0.233 0.767 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.253 0.747 27 H 0.154 0.846 28 H 0.110 0.890 29 H 0.140 0.860 30 H 0.122 0.878 31 H 0.099 0.901 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.492 -16.888 -0.283 17.248 hybrid contribution -0.050 1.341 0.079 1.345 sum 3.442 -15.547 -0.204 15.925 Atomic orbital electron populations 1.69673 1.07061 1.29775 1.49134 1.26151 0.96539 1.02744 0.95658 0.84913 0.77717 0.76110 0.79162 1.19409 1.19604 1.19424 1.19727 0.93026 0.83549 1.50611 0.89489 1.41845 1.09577 1.04622 1.63351 1.20400 0.88133 0.85887 0.83667 1.90469 1.15106 1.87524 1.58045 1.20758 0.91777 0.84079 1.04008 1.45696 1.11379 1.04414 1.74340 1.20298 0.89004 0.83347 0.74900 1.90655 1.18214 1.85244 1.51618 1.21986 1.00218 0.88228 1.06771 0.83718 1.22772 1.02870 0.97440 0.89119 1.21437 1.05472 0.92668 1.02779 1.22879 0.98204 0.93841 0.99094 1.22632 0.90334 1.01160 1.02755 0.91011 0.76733 0.88983 0.89049 0.74723 0.84574 0.88990 0.86009 0.87844 0.90093 0.87782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.90 13.05 21.66 0.28 -48.62 16 2 C -0.01 -0.53 5.50 84.93 0.47 -0.07 16 3 Si 1.00 41.71 29.55 68.60 2.03 43.74 16 4 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 6 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.34 -18.81 9.68 84.04 0.81 -18.00 16 8 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 9 N -0.56 -28.31 5.29 -306.98 -1.62 -29.94 16 10 C 0.43 20.17 7.85 87.65 0.69 20.86 16 11 O -0.62 -32.39 15.24 -3.07 -0.05 -32.44 16 12 C 0.12 4.55 6.15 85.63 0.53 5.08 16 13 N -0.70 -23.68 5.53 -466.78 -2.58 -26.26 16 14 C 0.54 17.18 7.61 87.66 0.67 17.84 16 15 O -0.58 -22.12 16.25 -3.04 -0.05 -22.17 16 16 C -0.15 -3.55 6.19 -11.51 -0.07 -3.62 16 17 H 0.15 2.76 8.14 -2.39 -0.02 2.74 16 18 C -0.08 -1.62 10.23 30.59 0.31 -1.30 16 19 C -0.22 -4.75 5.06 -52.17 -0.26 -5.01 16 20 C -0.10 -1.61 10.53 30.59 0.32 -1.29 16 21 C -0.13 -2.78 10.16 30.59 0.31 -2.47 16 22 H 0.28 14.01 8.31 -92.71 -0.77 13.23 16 23 H 0.40 19.44 7.90 -92.71 -0.73 18.71 16 24 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 25 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 26 H 0.41 13.56 7.44 -92.71 -0.69 12.87 16 27 H 0.14 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -66.51 289.28 1.52 -64.99 By element: Atomic # 1 Polarization: 38.93 SS G_CDS: -0.27 Total: 38.67 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 3.77 Total: 12.01 kcal Atomic # 7 Polarization: -100.89 SS G_CDS: -3.92 Total: -104.81 kcal Atomic # 8 Polarization: -54.51 SS G_CDS: -0.10 Total: -54.60 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -66.51 1.52 -64.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525372809.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.259 kcal (2) G-P(sol) polarization free energy of solvation -66.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds