Wall clock time and date at job start Sun Mar 29 2020 22:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 O 1.45200 * 109.46937 * 64.99847 * 3 2 1 14 14 C 1.34874 * 117.00283 * 270.00130 * 13 3 2 15 15 O 1.21605 * 120.00323 * 0.02562 * 14 13 3 16 16 C 1.46589 * 120.00024 * 179.97438 * 14 13 3 17 17 N 1.38198 * 126.85533 * 359.69259 * 16 14 13 18 18 H 0.97001 * 126.47784 * 359.97438 * 17 16 14 19 19 C 1.34467 * 107.04897 * 179.84089 * 17 16 14 20 20 N 1.30877 * 109.18368 * 0.42841 * 19 17 16 21 21 C 1.33277 * 109.70533 * 359.72664 * 20 19 17 22 22 C 1.50693 * 126.11872 * 180.02562 * 21 20 19 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 27 27 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 28 28 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 29 29 H 1.08002 * 125.41051 * 180.12322 * 19 17 16 30 30 H 1.09005 * 109.47615 * 269.98389 * 22 21 20 31 31 H 1.09004 * 109.46942 * 29.97805 * 22 21 20 32 32 H 1.08999 * 109.47701 * 149.97759 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 8 1.6559 2.0916 1.2407 14 6 0.4670 2.7284 1.2561 15 8 -0.2295 2.7401 0.2593 16 6 0.0140 3.4056 2.4747 17 7 0.6833 3.4755 3.6818 18 1 1.5469 3.0837 3.8859 19 6 -0.0874 4.1919 4.5190 20 7 -1.1815 4.5497 3.8963 21 6 -1.1580 4.0893 2.6458 22 6 -2.2307 4.2870 1.6061 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.8292 -0.0609 -2.9500 29 1 0.1554 4.4296 5.5442 30 1 -2.9492 3.4694 1.6651 31 1 -2.7414 5.2330 1.7864 32 1 -1.7778 4.3018 0.6148 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525461980.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:02 Heat of formation + Delta-G solvation = -45.110387 kcal Electronic energy + Delta-G solvation = -17091.759995 eV Core-core repulsion = 14246.060988 eV Total energy + Delta-G solvation = -2845.699007 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.07747 -39.31602 -35.86779 -33.67277 -33.02880 -31.49084 -30.92360 -27.67724 -26.90403 -23.73541 -22.80939 -21.49711 -19.91939 -19.43826 -18.34420 -16.69945 -16.34687 -15.73060 -15.23384 -14.72745 -14.55230 -14.35279 -13.09282 -12.91494 -12.82261 -12.64009 -12.18533 -11.99936 -11.54748 -11.42730 -11.25019 -11.01122 -10.73498 -10.36225 -10.32609 -9.94093 -9.84248 -9.68559 -9.44997 -8.89443 -8.53682 -8.41144 -6.24812 -4.32756 1.41423 2.90996 3.00440 3.20974 3.25187 3.26935 3.54738 3.63695 4.27792 4.49482 5.03243 5.07153 5.24166 5.63793 5.90492 5.95059 6.06610 6.19325 6.21255 6.26072 6.40721 6.65449 6.81701 6.90781 7.10943 7.15838 7.30881 7.53703 7.66477 7.85549 7.92610 8.07739 8.52892 8.78791 9.32559 10.81860 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.034853 B = 0.006625 C = 0.006005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.189280 B = 4225.331559 C = 4661.611790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.225 3.775 4 H 0.050 0.950 5 C -0.525 4.525 6 H 0.067 0.933 7 C 0.065 3.935 8 N -0.886 5.886 9 Si 0.912 3.088 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.275 1.275 13 O -0.360 6.360 14 C 0.529 3.471 15 O -0.498 6.498 16 C -0.062 4.062 17 N -0.541 5.541 18 H 0.431 0.569 19 C 0.211 3.789 20 N -0.503 5.503 21 C 0.090 3.910 22 C -0.077 4.077 23 H 0.031 0.969 24 H 0.033 0.967 25 H 0.055 0.945 26 H 0.040 0.960 27 H 0.110 0.890 28 H 0.268 0.732 29 H 0.215 0.785 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.815 4.120 9.805 11.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.173 3.827 4 H 0.067 0.933 5 C -0.563 4.563 6 H 0.085 0.915 7 C -0.138 4.138 8 N -0.523 5.523 9 Si 0.738 3.262 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.200 1.200 13 O -0.276 6.276 14 C 0.372 3.628 15 O -0.387 6.387 16 C -0.176 4.176 17 N -0.146 5.146 18 H 0.271 0.729 19 C -0.073 4.073 20 N -0.224 5.224 21 C -0.044 4.044 22 C -0.135 4.135 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.128 0.872 28 H 0.078 0.922 29 H 0.231 0.769 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.593 4.431 9.592 11.955 hybrid contribution 2.101 -0.780 -0.241 2.254 sum -3.493 3.650 9.351 10.628 Atomic orbital electron populations 1.21865 0.98226 0.99127 1.00852 1.22028 0.92763 0.99230 1.03365 1.20715 0.94999 0.88750 0.78284 0.93252 1.20971 0.89560 1.39398 1.06382 0.91512 1.24874 0.99268 0.94666 0.95002 1.69869 1.35544 1.37503 1.09430 0.86338 0.83781 0.78500 0.77547 1.19964 1.20921 1.19991 1.86543 1.33625 1.62732 1.44725 1.19439 0.81174 0.76615 0.85544 1.90822 1.55610 1.58560 1.33695 1.20339 0.97582 1.12454 0.87263 1.43343 1.19947 1.40947 1.10315 0.72920 1.25076 0.88327 0.95803 0.98063 1.70107 1.21416 1.25054 1.05784 1.21057 0.94063 0.96241 0.93051 1.20295 0.95056 1.02060 0.96058 0.94971 0.94748 0.92622 0.94082 0.87225 0.92210 0.76878 0.90786 0.91166 0.89132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.56 37.16 0.32 -2.79 16 2 C -0.14 -3.31 5.49 -26.73 -0.15 -3.46 16 3 C 0.22 5.82 2.25 -27.89 -0.06 5.76 16 4 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 5 C -0.53 -14.33 8.90 -34.44 -0.31 -14.63 16 6 H 0.07 1.78 7.81 -52.48 -0.41 1.37 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -24.54 11.29 55.43 0.63 -23.91 16 9 Si 0.91 20.60 29.54 -169.99 -5.02 15.58 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 O -0.36 -8.28 9.82 -40.97 -0.40 -8.68 16 14 C 0.53 11.12 6.38 34.10 0.22 11.34 16 15 O -0.50 -11.24 12.01 -19.35 -0.23 -11.47 16 16 C -0.06 -1.07 7.13 -82.16 -0.59 -1.66 16 17 N -0.54 -7.19 6.19 -10.81 -0.07 -7.26 16 18 H 0.43 4.75 8.96 -40.82 -0.37 4.38 16 19 C 0.21 2.45 13.00 -90.58 -1.18 1.27 16 20 N -0.50 -7.54 11.20 -10.63 -0.12 -7.66 16 21 C 0.09 1.48 7.15 -82.50 -0.59 0.89 16 22 C -0.08 -1.13 9.88 36.00 0.36 -0.77 16 23 H 0.03 0.68 6.06 -51.93 -0.31 0.36 16 24 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 1.25 7.79 -51.93 -0.40 0.85 16 26 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.11 2.89 5.95 -51.93 -0.31 2.59 16 28 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.21 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.09 1.44 6.48 -51.93 -0.34 1.11 16 LS Contribution 274.57 15.07 4.14 4.14 Total: -1.00 -30.98 274.57 -6.91 -37.89 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -3.76 Total: 3.78 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -2.07 Total: -2.41 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.44 Total: -38.83 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.63 Total: -20.15 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.98 -6.91 -37.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525461980.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.218 kcal (2) G-P(sol) polarization free energy of solvation -30.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds