Wall clock time and date at job start Sun Mar 29 2020 22:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 O 1.45200 * 109.46937 * 64.99847 * 3 2 1 14 14 C 1.34874 * 117.00283 * 270.00130 * 13 3 2 15 15 O 1.21605 * 120.00323 * 0.02562 * 14 13 3 16 16 C 1.46589 * 120.00024 * 179.97438 * 14 13 3 17 17 N 1.38198 * 126.85533 * 359.69259 * 16 14 13 18 18 H 0.97001 * 126.47784 * 359.97438 * 17 16 14 19 19 C 1.34467 * 107.04897 * 179.84089 * 17 16 14 20 20 N 1.30877 * 109.18368 * 0.42841 * 19 17 16 21 21 C 1.33277 * 109.70533 * 359.72664 * 20 19 17 22 22 C 1.50693 * 126.11872 * 180.02562 * 21 20 19 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 27 27 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 28 28 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 29 29 H 1.08002 * 125.41051 * 180.12322 * 19 17 16 30 30 H 1.09005 * 109.47615 * 269.98389 * 22 21 20 31 31 H 1.09004 * 109.46942 * 29.97805 * 22 21 20 32 32 H 1.08999 * 109.47701 * 149.97759 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 8 1.6559 2.0916 1.2407 14 6 0.4670 2.7284 1.2561 15 8 -0.2295 2.7401 0.2593 16 6 0.0140 3.4056 2.4747 17 7 0.6833 3.4755 3.6818 18 1 1.5469 3.0837 3.8859 19 6 -0.0874 4.1919 4.5190 20 7 -1.1815 4.5497 3.8963 21 6 -1.1580 4.0893 2.6458 22 6 -2.2307 4.2870 1.6061 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.8292 -0.0609 -2.9500 29 1 0.1554 4.4296 5.5442 30 1 -2.9492 3.4694 1.6651 31 1 -2.7414 5.2330 1.7864 32 1 -1.7778 4.3018 0.6148 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525461980.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:02 Heat of formation + Delta-G solvation = -64.048814 kcal Electronic energy + Delta-G solvation = -17092.581227 eV Core-core repulsion = 14246.060988 eV Total energy + Delta-G solvation = -2846.520239 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.23718 -41.02907 -37.65349 -35.56624 -34.24396 -33.39698 -32.18190 -29.48140 -28.33764 -25.50398 -24.34391 -22.82383 -21.70887 -20.76394 -19.76850 -18.64327 -17.97718 -17.28395 -16.88984 -16.31889 -16.03712 -15.50696 -14.87383 -14.77724 -14.00972 -13.97355 -13.76805 -13.42543 -13.33810 -13.24229 -13.06157 -12.83307 -12.59023 -12.16976 -11.79122 -11.71728 -11.42252 -11.15816 -11.04662 -10.85918 -10.55228 -9.65464 -8.29275 -6.46654 0.10974 1.40489 1.43779 1.51762 1.75901 1.76780 2.08022 2.16689 2.42252 3.00585 3.49413 3.83849 4.15810 4.25513 4.35476 4.37907 4.53999 4.71932 4.78536 4.81697 4.94513 5.01782 5.07284 5.19068 5.31820 5.46259 5.51157 5.63971 5.92821 6.06673 6.34221 6.56754 6.78663 6.93329 7.24468 8.77337 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.034853 B = 0.006625 C = 0.006005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.189280 B = 4225.331559 C = 4661.611790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.129 4.129 3 C 0.229 3.771 4 H 0.010 0.990 5 C -0.552 4.552 6 H 0.066 0.934 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.980 3.020 10 H -0.263 1.263 11 H -0.277 1.277 12 H -0.270 1.270 13 O -0.364 6.364 14 C 0.525 3.475 15 O -0.524 6.524 16 C -0.102 4.102 17 N -0.537 5.537 18 H 0.441 0.559 19 C 0.250 3.750 20 N -0.529 5.529 21 C 0.095 3.905 22 C -0.077 4.077 23 H 0.033 0.967 24 H 0.061 0.939 25 H 0.039 0.961 26 H 0.045 0.955 27 H 0.088 0.912 28 H 0.271 0.729 29 H 0.273 0.727 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.303 4.504 11.977 13.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.167 4.167 3 C 0.176 3.824 4 H 0.027 0.973 5 C -0.590 4.590 6 H 0.084 0.916 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.803 3.197 10 H -0.188 1.188 11 H -0.202 1.202 12 H -0.195 1.195 13 O -0.280 6.280 14 C 0.371 3.629 15 O -0.415 6.415 16 C -0.216 4.216 17 N -0.142 5.142 18 H 0.283 0.717 19 C -0.034 4.034 20 N -0.249 5.249 21 C -0.040 4.040 22 C -0.135 4.135 23 H 0.052 0.948 24 H 0.080 0.920 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.106 0.894 28 H 0.081 0.919 29 H 0.289 0.711 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.079 4.812 11.781 13.702 hybrid contribution 1.859 -0.812 -0.807 2.183 sum -3.220 4.000 10.973 12.115 Atomic orbital electron populations 1.21711 0.96264 1.00605 1.00125 1.21874 0.94460 0.98028 1.02369 1.20401 0.94533 0.89214 0.78250 0.97261 1.21280 0.90382 1.40274 1.07051 0.91556 1.25781 1.04168 0.93826 0.94322 1.69996 1.37546 1.37691 1.09822 0.85278 0.77721 0.78725 0.77961 1.18809 1.20231 1.19503 1.86514 1.35112 1.63324 1.43097 1.19982 0.80106 0.76092 0.86729 1.90799 1.55972 1.59574 1.35105 1.19917 0.99142 1.14914 0.87625 1.43345 1.20463 1.41206 1.09148 0.71708 1.26278 0.86127 0.91761 0.99185 1.70190 1.23232 1.26361 1.05166 1.21354 0.93662 0.95010 0.93949 1.20311 0.94945 1.03451 0.94782 0.94772 0.92027 0.94225 0.93643 0.89396 0.91941 0.71121 0.89963 0.89172 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.69 8.56 71.98 0.62 -5.07 16 2 C -0.13 -6.44 5.49 30.59 0.17 -6.28 16 3 C 0.23 12.31 2.25 29.85 0.07 12.38 16 4 H 0.01 0.58 7.16 -2.39 -0.02 0.56 16 5 C -0.55 -30.76 8.90 25.60 0.23 -30.53 16 6 H 0.07 3.59 7.81 -2.91 -0.02 3.57 16 7 C 0.02 1.04 5.29 84.66 0.45 1.49 16 8 N -0.91 -51.59 11.29 21.45 0.24 -51.34 16 9 Si 0.98 42.07 29.54 68.60 2.03 44.10 16 10 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 11 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 12 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 13 O -0.36 -17.17 9.82 -57.88 -0.57 -17.74 16 14 C 0.53 22.66 6.38 70.00 0.45 23.10 16 15 O -0.52 -24.72 12.01 19.49 0.23 -24.48 16 16 C -0.10 -3.49 7.13 39.97 0.29 -3.21 16 17 N -0.54 -13.03 6.19 -188.10 -1.16 -14.20 16 18 H 0.44 8.75 8.96 -92.71 -0.83 7.92 16 19 C 0.25 4.81 13.00 180.33 2.35 7.15 16 20 N -0.53 -14.35 11.20 -187.56 -2.10 -16.45 16 21 C 0.10 3.02 7.15 41.99 0.30 3.32 16 22 C -0.08 -2.23 9.88 71.23 0.70 -1.53 16 23 H 0.03 1.45 6.06 -2.39 -0.01 1.44 16 24 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.04 1.83 7.79 -2.38 -0.02 1.81 16 26 H 0.04 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.09 4.78 5.95 -2.39 -0.01 4.77 16 28 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 29 H 0.27 1.69 8.06 -2.91 -0.02 1.66 16 30 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 31 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.07 2.33 6.48 -2.39 -0.02 2.32 16 Total: -1.00 -68.96 274.57 4.59 -64.37 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.32 Total: 14.92 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 5.61 Total: 0.83 kcal Atomic # 7 Polarization: -78.96 SS G_CDS: -3.02 Total: -81.99 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -0.33 Total: -42.22 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -68.96 4.59 -64.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525461980.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.318 kcal (2) G-P(sol) polarization free energy of solvation -68.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds