Wall clock time and date at job start Sun Mar 29 2020 22:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47184 * 2 1 4 4 H 1.09001 * 109.46988 * 304.99955 * 3 2 1 5 5 C 1.50701 * 109.47036 * 185.00353 * 3 2 1 6 6 H 1.08004 * 119.99873 * 239.99674 * 5 3 2 7 7 C 1.37880 * 120.00290 * 59.99934 * 5 3 2 8 8 N 1.31518 * 119.99618 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00182 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46722 * 90.00446 * 9 7 5 11 11 H 1.48498 * 109.46967 * 210.00327 * 9 7 5 12 12 H 1.48499 * 109.47056 * 330.00380 * 9 7 5 13 13 O 1.45193 * 109.47038 * 65.00236 * 3 2 1 14 14 C 1.34873 * 117.00124 * 269.99906 * 13 3 2 15 15 O 1.21602 * 119.99817 * 0.02562 * 14 13 3 16 16 C 1.46586 * 119.99858 * 180.02562 * 14 13 3 17 17 C 1.36761 * 126.85290 * 179.97438 * 16 14 13 18 18 N 1.33275 * 107.77268 * 180.02562 * 17 16 14 19 19 C 1.30879 * 109.70409 * 359.72658 * 18 17 16 20 20 N 1.34467 * 109.18363 * 0.44432 * 19 18 17 21 21 C 1.46499 * 126.47567 * 179.82378 * 20 19 18 22 22 H 1.08993 * 109.47135 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46804 * 299.99839 * 1 2 3 24 24 H 1.09002 * 109.47243 * 59.99732 * 1 2 3 25 25 H 1.09005 * 109.46804 * 240.00161 * 2 1 3 26 26 H 1.08999 * 109.47686 * 120.00002 * 2 1 3 27 27 H 0.97002 * 119.99993 * 180.02562 * 8 7 5 28 28 H 1.07997 * 126.11255 * 0.02562 * 17 16 14 29 29 H 1.07999 * 125.40672 * 180.30990 * 19 18 17 30 30 H 1.09002 * 109.47391 * 269.69025 * 21 20 19 31 31 H 1.09001 * 109.46813 * 149.69082 * 21 20 19 32 32 H 1.09004 * 109.47041 * 29.69209 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1433 0.8784 -1.2281 8 7 3.4061 0.3375 -2.1734 9 14 6.0049 0.8812 -1.3820 10 1 6.5548 -0.3503 -0.7605 11 1 6.3828 0.9225 -2.8175 12 1 6.5569 2.0738 -0.6904 13 8 1.6559 2.0917 1.2407 14 6 0.4671 2.7285 1.2561 15 8 -0.2293 2.7401 0.2593 16 6 0.0147 3.4066 2.4744 17 6 -1.1571 4.0908 2.6453 18 7 -1.1799 4.5526 3.8953 19 6 -0.0883 4.1900 4.5197 20 7 0.6872 3.4825 3.6793 21 6 1.9950 2.8974 3.9851 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 3.8291 -0.0610 -2.9501 28 1 -1.9263 4.2317 1.9005 29 1 0.1525 4.4239 5.5462 30 1 2.7790 3.6172 3.7498 31 1 2.1382 1.9963 3.3888 32 1 2.0408 2.6435 5.0441 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525462472.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:57 Heat of formation + Delta-G solvation = -32.948468 kcal Electronic energy + Delta-G solvation = -17226.849838 eV Core-core repulsion = 14381.678211 eV Total energy + Delta-G solvation = -2845.171627 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.04402 -39.31982 -35.85335 -34.10924 -33.44209 -31.44659 -29.89471 -27.35153 -26.99604 -23.99895 -22.79056 -21.31933 -20.31007 -19.47769 -17.58855 -16.66559 -16.40900 -15.97855 -15.25574 -14.90003 -14.53909 -14.00899 -13.50583 -13.16790 -12.89836 -12.88830 -12.60407 -12.06715 -11.54506 -11.39068 -11.25957 -11.04342 -10.71269 -10.36059 -10.28421 -9.88371 -9.74307 -9.62849 -9.46058 -8.89914 -8.57415 -8.49339 -6.25788 -4.33772 1.44493 2.72453 2.95305 3.18433 3.24278 3.27252 3.57011 3.59590 4.26420 4.60864 4.85404 4.94376 5.06421 5.30945 5.55019 5.58399 5.94795 6.14483 6.18796 6.25496 6.39985 6.59346 6.79899 6.89770 7.09012 7.10308 7.16898 7.52774 7.65607 7.84656 7.94548 8.06655 8.52279 8.77970 9.31670 10.80937 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.032783 B = 0.007141 C = 0.006312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.896338 B = 3920.328528 C = 4435.027659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.135 4.135 3 C 0.223 3.777 4 H 0.049 0.951 5 C -0.524 4.524 6 H 0.067 0.933 7 C 0.064 3.936 8 N -0.886 5.886 9 Si 0.911 3.089 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.272 1.272 13 O -0.357 6.357 14 C 0.530 3.470 15 O -0.501 6.501 16 C -0.062 4.062 17 C 0.059 3.941 18 N -0.504 5.504 19 C 0.200 3.800 20 N -0.433 5.433 21 C 0.064 3.936 22 H 0.034 0.966 23 H 0.031 0.969 24 H 0.054 0.946 25 H 0.110 0.890 26 H 0.040 0.960 27 H 0.267 0.733 28 H 0.183 0.817 29 H 0.211 0.789 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.343 3.147 11.097 11.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C 0.171 3.829 4 H 0.067 0.933 5 C -0.561 4.561 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.523 5.523 9 Si 0.738 3.262 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.197 1.197 13 O -0.274 6.274 14 C 0.373 3.627 15 O -0.390 6.390 16 C -0.176 4.176 17 C -0.094 4.094 18 N -0.222 5.222 19 C -0.082 4.082 20 N -0.115 5.115 21 C -0.077 4.077 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.073 0.927 25 H 0.128 0.872 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.200 0.800 29 H 0.227 0.773 30 H 0.102 0.898 31 H 0.128 0.872 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.922 3.392 10.946 11.827 hybrid contribution 1.619 -0.576 -0.524 1.797 sum -1.303 2.816 10.422 10.874 Atomic orbital electron populations 1.21868 0.98263 0.99132 1.00857 1.22029 0.92727 0.99230 1.03357 1.20731 0.95032 0.88751 0.78424 0.93320 1.20993 0.89482 1.39291 1.06379 0.91434 1.24882 0.99241 0.94712 0.95017 1.69886 1.35439 1.37539 1.09447 0.86287 0.83824 0.78622 0.77486 1.20335 1.20891 1.19681 1.86539 1.33636 1.62763 1.44448 1.19459 0.81161 0.76534 0.85520 1.90853 1.55674 1.58795 1.33671 1.20631 0.97595 1.12185 0.87203 1.22589 0.95747 0.96777 0.94314 1.70199 1.21293 1.24495 1.06236 1.25055 0.88415 0.96599 0.98111 1.45502 1.17089 1.38878 1.09995 1.22360 0.80868 1.01570 1.02941 0.94726 0.94991 0.92656 0.87239 0.94074 0.92271 0.79960 0.77282 0.89792 0.87216 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.56 37.16 0.32 -2.80 16 2 C -0.14 -3.26 5.49 -26.73 -0.15 -3.41 16 3 C 0.22 5.70 2.25 -27.88 -0.06 5.64 16 4 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 5 C -0.52 -14.01 8.90 -34.44 -0.31 -14.32 16 6 H 0.07 1.76 7.81 -52.48 -0.41 1.35 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -24.39 11.29 55.43 0.63 -23.76 16 9 Si 0.91 20.36 29.54 -169.99 -5.02 15.34 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 O -0.36 -8.03 7.46 -40.97 -0.31 -8.34 16 14 C 0.53 11.23 6.38 34.10 0.22 11.45 16 15 O -0.50 -11.69 14.09 -19.34 -0.27 -11.96 16 16 C -0.06 -1.09 6.91 -82.16 -0.57 -1.66 16 17 C 0.06 0.97 11.66 -17.46 -0.20 0.77 16 18 N -0.50 -7.69 11.20 -14.42 -0.16 -7.85 16 19 C 0.20 2.48 12.52 -90.58 -1.13 1.35 16 20 N -0.43 -6.13 3.17 -122.00 -0.39 -6.52 16 21 C 0.06 0.74 10.68 59.85 0.64 1.37 16 22 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.03 0.67 6.06 -51.93 -0.31 0.36 16 24 H 0.05 1.26 7.79 -51.93 -0.40 0.85 16 25 H 0.11 2.87 5.95 -51.93 -0.31 2.56 16 26 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.18 2.73 8.06 -52.49 -0.42 2.31 16 29 H 0.21 1.55 8.06 -52.49 -0.42 1.12 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.11 1.54 6.33 -51.93 -0.33 1.21 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 274.81 15.07 4.14 4.14 Total: -1.00 -30.70 274.81 -6.53 -37.24 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -3.81 Total: 1.71 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -1.34 Total: 0.00 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.08 Total: -38.13 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.58 Total: -20.30 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.70 -6.53 -37.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525462472.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.288 kcal (2) G-P(sol) polarization free energy of solvation -30.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds