Wall clock time and date at job start Sun Mar 29 2020 22:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47184 * 2 1 4 4 H 1.09001 * 109.46988 * 304.99955 * 3 2 1 5 5 C 1.50701 * 109.47036 * 185.00353 * 3 2 1 6 6 H 1.08004 * 119.99873 * 239.99674 * 5 3 2 7 7 C 1.37880 * 120.00290 * 59.99934 * 5 3 2 8 8 N 1.31518 * 119.99618 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00182 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46722 * 90.00446 * 9 7 5 11 11 H 1.48498 * 109.46967 * 210.00327 * 9 7 5 12 12 H 1.48499 * 109.47056 * 330.00380 * 9 7 5 13 13 O 1.45193 * 109.47038 * 65.00236 * 3 2 1 14 14 C 1.34873 * 117.00124 * 269.99906 * 13 3 2 15 15 O 1.21602 * 119.99817 * 0.02562 * 14 13 3 16 16 C 1.46586 * 119.99858 * 180.02562 * 14 13 3 17 17 C 1.36761 * 126.85290 * 179.97438 * 16 14 13 18 18 N 1.33275 * 107.77268 * 180.02562 * 17 16 14 19 19 C 1.30879 * 109.70409 * 359.72658 * 18 17 16 20 20 N 1.34467 * 109.18363 * 0.44432 * 19 18 17 21 21 C 1.46499 * 126.47567 * 179.82378 * 20 19 18 22 22 H 1.08993 * 109.47135 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46804 * 299.99839 * 1 2 3 24 24 H 1.09002 * 109.47243 * 59.99732 * 1 2 3 25 25 H 1.09005 * 109.46804 * 240.00161 * 2 1 3 26 26 H 1.08999 * 109.47686 * 120.00002 * 2 1 3 27 27 H 0.97002 * 119.99993 * 180.02562 * 8 7 5 28 28 H 1.07997 * 126.11255 * 0.02562 * 17 16 14 29 29 H 1.07999 * 125.40672 * 180.30990 * 19 18 17 30 30 H 1.09002 * 109.47391 * 269.69025 * 21 20 19 31 31 H 1.09001 * 109.46813 * 149.69082 * 21 20 19 32 32 H 1.09004 * 109.47041 * 29.69209 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1433 0.8784 -1.2281 8 7 3.4061 0.3375 -2.1734 9 14 6.0049 0.8812 -1.3820 10 1 6.5548 -0.3503 -0.7605 11 1 6.3828 0.9225 -2.8175 12 1 6.5569 2.0738 -0.6904 13 8 1.6559 2.0917 1.2407 14 6 0.4671 2.7285 1.2561 15 8 -0.2293 2.7401 0.2593 16 6 0.0147 3.4066 2.4744 17 6 -1.1571 4.0908 2.6453 18 7 -1.1799 4.5526 3.8953 19 6 -0.0883 4.1900 4.5197 20 7 0.6872 3.4825 3.6793 21 6 1.9950 2.8974 3.9851 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 3.8291 -0.0610 -2.9501 28 1 -1.9263 4.2317 1.9005 29 1 0.1525 4.4239 5.5462 30 1 2.7790 3.6172 3.7498 31 1 2.1382 1.9963 3.3888 32 1 2.0408 2.6435 5.0441 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525462472.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:57 Heat of formation + Delta-G solvation = -50.596385 kcal Electronic energy + Delta-G solvation = -17227.615109 eV Core-core repulsion = 14381.678211 eV Total energy + Delta-G solvation = -2845.936898 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.22455 -41.05084 -37.65820 -35.63687 -34.96509 -33.38390 -31.20334 -29.30748 -27.98830 -25.73930 -24.50488 -22.44812 -22.03156 -21.10717 -19.08397 -18.52563 -17.96633 -17.40573 -16.89646 -16.35721 -16.27239 -15.16486 -14.99023 -14.75649 -14.53976 -14.16584 -13.75929 -13.63440 -13.36533 -13.20733 -13.09036 -12.83473 -12.54463 -12.15515 -11.84830 -11.73512 -11.41212 -11.20255 -10.85942 -10.73595 -10.54722 -9.78067 -8.28376 -6.45506 0.11377 1.41488 1.43400 1.53598 1.61349 1.73522 1.98454 2.13661 2.40639 3.01869 3.58843 3.77345 3.96464 4.20999 4.34284 4.36965 4.44512 4.46204 4.55841 4.80929 4.83406 5.04113 5.06478 5.18440 5.29961 5.36335 5.48854 5.63980 5.91644 6.05467 6.11354 6.57882 6.77667 6.91820 7.25524 8.78588 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.032783 B = 0.007141 C = 0.006312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.896338 B = 3920.328528 C = 4435.027659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.128 4.128 3 C 0.227 3.773 4 H 0.006 0.994 5 C -0.547 4.547 6 H 0.070 0.930 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.980 3.020 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.265 1.265 13 O -0.354 6.354 14 C 0.528 3.472 15 O -0.534 6.534 16 C -0.101 4.101 17 C 0.068 3.932 18 N -0.528 5.528 19 C 0.234 3.766 20 N -0.434 5.434 21 C 0.061 3.939 22 H 0.061 0.939 23 H 0.032 0.968 24 H 0.036 0.964 25 H 0.087 0.913 26 H 0.048 0.952 27 H 0.270 0.730 28 H 0.186 0.814 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.426 3.475 13.641 14.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.167 4.167 3 C 0.174 3.826 4 H 0.023 0.977 5 C -0.584 4.584 6 H 0.088 0.912 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.804 3.196 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.189 1.189 13 O -0.270 6.270 14 C 0.373 3.627 15 O -0.425 6.425 16 C -0.215 4.215 17 C -0.086 4.086 18 N -0.246 5.246 19 C -0.047 4.047 20 N -0.115 5.115 21 C -0.079 4.079 22 H 0.080 0.920 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.106 0.894 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.203 0.797 29 H 0.283 0.717 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.000 3.717 13.512 14.156 hybrid contribution 1.268 -0.603 -1.207 1.852 sum -0.731 3.115 12.305 12.715 Atomic orbital electron populations 1.21717 0.96526 1.00578 0.99973 1.21872 0.94218 0.98081 1.02482 1.20423 0.94679 0.89169 0.78344 0.97651 1.21292 0.90147 1.39987 1.07007 0.91226 1.25797 1.04139 0.93916 0.94362 1.70018 1.37476 1.37875 1.09899 0.85216 0.77756 0.79141 0.77516 1.19116 1.20627 1.18932 1.86543 1.34723 1.63113 1.42652 1.20015 0.80180 0.75913 0.86564 1.90825 1.56276 1.60131 1.35296 1.20239 0.99151 1.14523 0.87575 1.22766 0.95209 0.95599 0.95069 1.70271 1.22990 1.25670 1.05690 1.26191 0.86355 0.92917 0.99267 1.45690 1.17888 1.39077 1.08886 1.22546 0.79750 1.00233 1.05377 0.91963 0.94872 0.94499 0.89440 0.93351 0.92030 0.79715 0.71691 0.89272 0.90261 0.84588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.78 8.56 71.98 0.62 -5.16 16 2 C -0.13 -6.36 5.49 30.59 0.17 -6.19 16 3 C 0.23 12.08 2.25 29.85 0.07 12.15 16 4 H 0.01 0.35 7.16 -2.39 -0.02 0.33 16 5 C -0.55 -29.89 8.90 25.60 0.23 -29.66 16 6 H 0.07 3.67 7.81 -2.91 -0.02 3.64 16 7 C 0.02 0.95 5.29 84.65 0.45 1.40 16 8 N -0.91 -51.54 11.29 21.45 0.24 -51.30 16 9 Si 0.98 41.59 29.54 68.60 2.03 43.62 16 10 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 11 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 12 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 13 O -0.35 -16.41 7.46 -57.87 -0.43 -16.84 16 14 C 0.53 23.08 6.38 70.00 0.45 23.52 16 15 O -0.53 -26.18 14.09 19.50 0.27 -25.91 16 16 C -0.10 -3.53 6.91 39.97 0.28 -3.26 16 17 C 0.07 2.20 11.66 84.13 0.98 3.18 16 18 N -0.53 -14.76 11.20 -199.53 -2.23 -16.99 16 19 C 0.23 4.86 12.52 180.33 2.26 7.12 16 20 N -0.43 -11.26 3.17 -539.88 -1.71 -12.97 16 21 C 0.06 1.25 10.68 127.77 1.36 2.61 16 22 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 23 H 0.03 1.42 6.06 -2.38 -0.01 1.41 16 24 H 0.04 1.73 7.79 -2.39 -0.02 1.71 16 25 H 0.09 4.74 5.95 -2.38 -0.01 4.73 16 26 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 28 H 0.19 5.60 8.06 -2.91 -0.02 5.57 16 29 H 0.27 2.16 8.06 -2.91 -0.02 2.14 16 30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.08 2.16 6.33 -2.39 -0.02 2.14 16 32 H 0.14 1.40 8.14 -2.38 -0.02 1.38 16 Total: -1.00 -69.19 274.81 6.14 -63.05 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 1.12 Total: 11.63 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 6.85 Total: 5.71 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -3.71 Total: -81.26 kcal Atomic # 8 Polarization: -42.59 SS G_CDS: -0.16 Total: -42.75 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -69.19 6.14 -63.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525462472.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.451 kcal (2) G-P(sol) polarization free energy of solvation -69.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds