Wall clock time and date at job start Sun Mar 29 2020 22:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 H 1.08993 * 109.67784 * 315.68620 * 3 2 1 5 5 C 1.53294 * 109.68113 * 195.12970 * 3 2 1 6 6 O 1.43054 * 109.25454 * 292.58478 * 5 3 2 7 7 C 1.42956 * 114.10719 * 297.45527 * 6 5 3 8 8 C 1.53296 * 109.26429 * 62.55431 * 7 6 5 9 9 N 1.47150 * 109.68122 * 76.20520 * 3 2 1 10 10 C 1.34769 * 120.98354 * 249.16669 * 9 3 2 11 11 O 1.21589 * 120.00378 * 354.80402 * 10 9 3 12 12 N 1.34776 * 120.00199 * 174.80312 * 10 9 3 13 13 C 1.46505 * 120.00094 * 184.97373 * 12 10 9 14 14 C 1.50698 * 109.46988 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00466 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99763 * 179.97438 * 14 13 12 17 17 N 1.31521 * 120.00017 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00145 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47023 * 89.99781 * 18 16 14 20 20 H 1.48498 * 109.47139 * 209.99634 * 18 16 14 21 21 H 1.48495 * 109.46993 * 329.99706 * 18 16 14 22 22 H 4.19062 * 14.98830 * 359.97438 * 4 2 1 23 23 H 1.09002 * 109.51120 * 52.50212 * 5 3 2 24 24 H 1.09001 * 109.51306 * 172.65480 * 5 3 2 25 25 H 1.08997 * 109.51772 * 302.59765 * 7 6 5 26 26 H 1.09008 * 109.51154 * 182.49751 * 7 6 5 27 27 H 1.08999 * 109.68328 * 67.39158 * 8 7 6 28 28 H 1.09000 * 109.68117 * 187.94986 * 8 7 6 29 29 H 0.96998 * 120.00389 * 4.97903 * 12 10 9 30 30 H 1.08997 * 109.47416 * 300.00051 * 13 12 10 31 31 H 1.09000 * 109.46652 * 60.00243 * 13 12 10 32 32 H 0.96994 * 120.00045 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0133 -0.7335 0.7169 5 6 3.1616 1.3942 0.3767 6 8 2.8317 2.3170 -0.6655 7 6 3.4410 2.0187 -1.9238 8 6 2.9396 0.6572 -2.4185 9 7 3.1417 -0.3295 -1.3456 10 6 3.7628 -1.5007 -1.5881 11 8 4.0050 -2.2617 -0.6713 12 7 4.1155 -1.8285 -2.8469 13 6 4.6913 -3.1462 -3.1268 14 6 4.9950 -3.2594 -4.5985 15 1 4.7810 -2.4324 -5.2593 16 6 5.5471 -4.4185 -5.1013 17 7 5.8127 -4.5171 -6.3856 18 14 5.9180 -5.8487 -3.9583 19 1 4.7333 -6.7408 -3.8813 20 1 7.0793 -6.6121 -4.4815 21 1 6.2361 -5.3302 -2.6037 22 1 -1.0500 -0.0002 0.0009 23 1 2.6952 1.7155 1.3081 24 1 4.2437 1.3601 0.5034 25 1 4.5241 1.9869 -1.8056 26 1 3.1764 2.7892 -2.6482 27 1 1.8792 0.7228 -2.6620 28 1 3.5021 0.3581 -3.3029 29 1 3.9881 -1.1919 -3.5677 30 1 5.6110 -3.2698 -2.5551 31 1 3.9797 -3.9214 -2.8423 32 1 6.2007 -5.3326 -6.7394 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001564667670.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:47 Heat of formation + Delta-G solvation = -3.084903 kcal Electronic energy + Delta-G solvation = -16885.437694 eV Core-core repulsion = 14041.561048 eV Total energy + Delta-G solvation = -2843.876646 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.38179 -38.32446 -35.00122 -34.46851 -33.36055 -32.20801 -30.76543 -28.49636 -27.05264 -24.51493 -22.76568 -21.86455 -19.87880 -18.56057 -17.82716 -16.63308 -16.50215 -15.78162 -15.63201 -15.33729 -14.97411 -14.47710 -14.16916 -13.71315 -13.36633 -12.84308 -12.40091 -12.27663 -12.05706 -11.76976 -11.14796 -11.01200 -10.81636 -10.75391 -10.34773 -9.98606 -9.96087 -9.58923 -9.49339 -8.81415 -8.66691 -8.07560 -6.22984 -4.25306 2.36416 2.82889 3.26126 3.29603 3.34386 3.41991 3.60804 3.68846 4.27990 4.32165 4.43999 4.64168 4.93377 4.97100 5.09431 5.12794 5.26872 5.37024 5.45151 5.64080 5.73085 5.95063 6.42736 6.69697 6.90691 7.07744 7.15847 7.29395 7.42840 7.60418 8.20791 8.57567 8.75147 9.06558 9.37457 10.88899 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.037963 B = 0.005870 C = 0.005533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.389090 B = 4768.476327 C = 5059.585382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.186 4.186 3 C 0.233 3.767 4 H 0.129 0.871 5 C 0.061 3.939 6 O -0.376 6.376 7 C 0.048 3.952 8 C 0.076 3.924 9 N -0.633 5.633 10 C 0.703 3.297 11 O -0.596 6.596 12 N -0.719 5.719 13 C 0.237 3.763 14 C -0.543 4.543 15 H 0.079 0.921 16 C 0.079 3.921 17 N -0.892 5.892 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.260 1.260 22 H 0.217 0.783 23 H 0.107 0.893 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.106 0.894 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.392 0.608 30 H 0.025 0.975 31 H 0.019 0.981 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.715 12.926 10.230 17.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.187 4.187 3 C 0.129 3.871 4 H 0.147 0.853 5 C -0.017 4.017 6 O -0.294 6.294 7 C -0.030 4.030 8 C -0.047 4.047 9 N -0.372 5.372 10 C 0.404 3.596 11 O -0.475 6.475 12 N -0.373 5.373 13 C 0.115 3.885 14 C -0.581 4.581 15 H 0.097 0.903 16 C -0.125 4.125 17 N -0.529 5.529 18 Si 0.703 3.297 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.184 1.184 22 H 0.234 0.766 23 H 0.125 0.875 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.124 0.876 27 H 0.092 0.908 28 H 0.112 0.888 29 H 0.228 0.772 30 H 0.043 0.957 31 H 0.036 0.964 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.516 12.324 10.722 17.587 hybrid contribution 0.024 -0.801 -0.123 0.811 sum -6.493 11.523 10.598 16.949 Atomic orbital electron populations 1.24860 0.95762 1.01165 0.99007 1.23183 0.94329 0.99991 1.01234 1.18468 0.83847 0.98693 0.86135 0.85346 1.22988 1.00188 0.87176 0.91307 1.87978 1.72080 1.50323 1.19015 1.23003 0.97480 0.96319 0.86185 1.22312 1.02367 0.89114 0.90945 1.47334 1.62307 1.18132 1.09437 1.15975 0.78511 0.80609 0.84471 1.90860 1.61626 1.51257 1.43795 1.45562 1.66035 1.19611 1.06081 1.19409 0.93318 0.78832 0.96984 1.21065 1.43525 1.02732 0.90814 0.90327 1.24772 0.94370 0.98297 0.95095 1.69878 1.42801 1.28019 1.12246 0.86815 0.78543 0.82514 0.81831 1.19844 1.20867 1.18411 0.76596 0.87498 0.91400 0.92227 0.87572 0.90759 0.88760 0.77220 0.95672 0.96357 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.31 19.25 29.55 0.57 -1.74 16 2 C -0.19 -2.60 12.33 -37.12 -0.46 -3.06 16 3 C 0.23 3.27 3.10 -70.21 -0.22 3.05 16 4 H 0.13 1.92 7.06 -51.93 -0.37 1.55 16 5 C 0.06 0.68 6.33 37.31 0.24 0.92 16 6 O -0.38 -4.51 10.55 -35.23 -0.37 -4.88 16 7 C 0.05 0.50 6.98 37.31 0.26 0.76 16 8 C 0.08 0.95 6.26 -3.53 -0.02 0.93 16 9 N -0.63 -10.01 2.69 -173.64 -0.47 -10.48 16 10 C 0.70 14.27 8.31 -86.93 -0.72 13.55 16 11 O -0.60 -14.15 15.82 5.29 0.08 -14.07 16 12 N -0.72 -15.09 5.46 -66.41 -0.36 -15.45 16 13 C 0.24 5.92 4.50 -5.19 -0.02 5.89 16 14 C -0.54 -14.92 9.83 -34.44 -0.34 -15.26 16 15 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 16 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 17 N -0.89 -26.40 13.96 55.43 0.77 -25.63 16 18 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 22 H 0.22 1.79 7.80 -54.09 -0.42 1.37 16 23 H 0.11 0.96 8.13 -51.93 -0.42 0.54 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.11 0.86 8.14 -51.92 -0.42 0.43 16 27 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 28 H 0.09 1.12 5.78 -51.93 -0.30 0.82 16 29 H 0.39 7.24 5.88 -40.82 -0.24 7.00 16 30 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 31 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 32 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 277.13 15.07 4.18 4.18 Total: -1.00 -33.50 277.13 -5.43 -38.94 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -3.78 Total: 3.41 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: -0.81 Total: 7.17 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: -0.06 Total: -51.56 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.29 Total: -18.94 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -33.50 -5.43 -38.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001564667670.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.850 kcal (2) G-P(sol) polarization free energy of solvation -33.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds