Wall clock time and date at job start Sun Mar 29 2020 22:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 H 1.08993 * 109.67784 * 315.68620 * 3 2 1 5 5 C 1.53294 * 109.68113 * 195.12970 * 3 2 1 6 6 O 1.43054 * 109.25454 * 292.58478 * 5 3 2 7 7 C 1.42956 * 114.10719 * 297.45527 * 6 5 3 8 8 C 1.53296 * 109.26429 * 62.55431 * 7 6 5 9 9 N 1.47150 * 109.68122 * 76.20520 * 3 2 1 10 10 C 1.34769 * 120.98354 * 249.16669 * 9 3 2 11 11 O 1.21589 * 120.00378 * 354.80402 * 10 9 3 12 12 N 1.34776 * 120.00199 * 174.80312 * 10 9 3 13 13 C 1.46505 * 120.00094 * 184.97373 * 12 10 9 14 14 C 1.50698 * 109.46988 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00466 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99763 * 179.97438 * 14 13 12 17 17 N 1.31521 * 120.00017 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00145 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47023 * 89.99781 * 18 16 14 20 20 H 1.48498 * 109.47139 * 209.99634 * 18 16 14 21 21 H 1.48495 * 109.46993 * 329.99706 * 18 16 14 22 22 H 4.19062 * 14.98830 * 359.97438 * 4 2 1 23 23 H 1.09002 * 109.51120 * 52.50212 * 5 3 2 24 24 H 1.09001 * 109.51306 * 172.65480 * 5 3 2 25 25 H 1.08997 * 109.51772 * 302.59765 * 7 6 5 26 26 H 1.09008 * 109.51154 * 182.49751 * 7 6 5 27 27 H 1.08999 * 109.68328 * 67.39158 * 8 7 6 28 28 H 1.09000 * 109.68117 * 187.94986 * 8 7 6 29 29 H 0.96998 * 120.00389 * 4.97903 * 12 10 9 30 30 H 1.08997 * 109.47416 * 300.00051 * 13 12 10 31 31 H 1.09000 * 109.46652 * 60.00243 * 13 12 10 32 32 H 0.96994 * 120.00045 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0133 -0.7335 0.7169 5 6 3.1616 1.3942 0.3767 6 8 2.8317 2.3170 -0.6655 7 6 3.4410 2.0187 -1.9238 8 6 2.9396 0.6572 -2.4185 9 7 3.1417 -0.3295 -1.3456 10 6 3.7628 -1.5007 -1.5881 11 8 4.0050 -2.2617 -0.6713 12 7 4.1155 -1.8285 -2.8469 13 6 4.6913 -3.1462 -3.1268 14 6 4.9950 -3.2594 -4.5985 15 1 4.7810 -2.4324 -5.2593 16 6 5.5471 -4.4185 -5.1013 17 7 5.8127 -4.5171 -6.3856 18 14 5.9180 -5.8487 -3.9583 19 1 4.7333 -6.7408 -3.8813 20 1 7.0793 -6.6121 -4.4815 21 1 6.2361 -5.3302 -2.6037 22 1 -1.0500 -0.0002 0.0009 23 1 2.6952 1.7155 1.3081 24 1 4.2437 1.3601 0.5034 25 1 4.5241 1.9869 -1.8056 26 1 3.1764 2.7892 -2.6482 27 1 1.8792 0.7228 -2.6620 28 1 3.5021 0.3581 -3.3029 29 1 3.9881 -1.1919 -3.5677 30 1 5.6110 -3.2698 -2.5551 31 1 3.9797 -3.9214 -2.8423 32 1 6.2007 -5.3326 -6.7394 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001564667670.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:46 Heat of formation + Delta-G solvation = -27.764105 kcal Electronic energy + Delta-G solvation = -16886.507864 eV Core-core repulsion = 14041.561048 eV Total energy + Delta-G solvation = -2844.946816 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.68274 -39.60359 -36.41133 -36.03584 -34.79433 -33.97034 -31.74613 -30.19756 -28.45532 -25.54171 -24.32164 -23.32981 -21.39824 -20.06365 -18.83185 -18.53534 -17.74791 -17.03765 -16.80038 -16.55734 -16.26437 -16.00756 -15.60864 -15.19939 -14.95372 -14.48593 -14.09902 -13.80795 -13.18695 -13.06976 -12.72944 -12.60233 -12.17999 -11.93659 -11.81646 -11.65677 -11.36593 -11.17759 -10.94326 -10.93110 -10.19327 -9.60379 -8.40988 -6.48180 1.16188 1.32891 1.35557 1.48105 1.83875 2.02464 2.16436 2.27902 2.82155 2.94408 2.99377 3.34386 3.67749 3.97175 4.02977 4.16651 4.34124 4.40770 4.56668 4.69481 4.79765 4.80446 5.01334 5.05742 5.19755 5.33328 5.45520 5.78316 6.03621 6.14034 6.52531 6.62931 6.96370 7.16041 7.48627 8.73603 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.037963 B = 0.005870 C = 0.005533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.389090 B = 4768.476327 C = 5059.585382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.233 4.233 3 C 0.227 3.773 4 H 0.111 0.889 5 C 0.068 3.932 6 O -0.383 6.383 7 C 0.051 3.949 8 C 0.071 3.929 9 N -0.626 5.626 10 C 0.701 3.299 11 O -0.635 6.635 12 N -0.719 5.719 13 C 0.251 3.749 14 C -0.547 4.547 15 H 0.060 0.940 16 C 0.030 3.970 17 N -0.929 5.929 18 Si 0.936 3.064 19 H -0.266 1.266 20 H -0.271 1.271 21 H -0.260 1.260 22 H 0.252 0.748 23 H 0.130 0.870 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.136 0.864 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.403 0.597 30 H 0.013 0.987 31 H 0.008 0.992 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.596 13.893 11.054 19.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.234 4.234 3 C 0.123 3.877 4 H 0.129 0.871 5 C -0.010 4.010 6 O -0.301 6.301 7 C -0.026 4.026 8 C -0.052 4.052 9 N -0.364 5.364 10 C 0.403 3.597 11 O -0.518 6.518 12 N -0.374 5.374 13 C 0.127 3.873 14 C -0.584 4.584 15 H 0.078 0.922 16 C -0.171 4.171 17 N -0.568 5.568 18 Si 0.760 3.240 19 H -0.191 1.191 20 H -0.196 1.196 21 H -0.185 1.185 22 H 0.268 0.732 23 H 0.148 0.852 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.154 0.846 27 H 0.098 0.902 28 H 0.115 0.885 29 H 0.241 0.759 30 H 0.031 0.969 31 H 0.026 0.974 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.426 13.358 11.542 19.152 hybrid contribution 0.200 -1.008 -0.397 1.101 sum -7.226 12.351 11.145 18.137 Atomic orbital electron populations 1.25749 0.96613 0.99200 0.96709 1.23371 0.94832 1.01910 1.03324 1.18637 0.84511 0.99935 0.84576 0.87094 1.23045 1.00645 0.85343 0.91960 1.87973 1.72361 1.50277 1.19479 1.23125 0.97579 0.95638 0.86297 1.22573 1.02938 0.89417 0.90233 1.47353 1.60825 1.16995 1.11189 1.16064 0.78572 0.81569 0.83500 1.90823 1.63195 1.53008 1.44729 1.45286 1.66369 1.18682 1.07080 1.18999 0.92683 0.80600 0.95044 1.21231 1.43142 1.02266 0.91802 0.92208 1.25549 0.94250 1.00901 0.96412 1.69971 1.43843 1.29113 1.13857 0.85877 0.78903 0.79515 0.79736 1.19056 1.19628 1.18478 0.73179 0.85245 0.90820 0.91899 0.84640 0.90228 0.88456 0.75880 0.96864 0.97375 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.59 19.25 74.32 1.43 -2.16 16 2 C -0.23 -6.18 12.33 31.13 0.38 -5.80 16 3 C 0.23 6.21 3.10 43.16 0.13 6.35 16 4 H 0.11 3.38 7.06 -2.39 -0.02 3.36 16 5 C 0.07 1.39 6.33 72.08 0.46 1.84 16 6 O -0.38 -8.23 10.55 -148.98 -1.57 -9.80 16 7 C 0.05 0.94 6.98 72.08 0.50 1.45 16 8 C 0.07 1.66 6.26 86.35 0.54 2.20 16 9 N -0.63 -19.39 2.69 -821.53 -2.21 -21.60 16 10 C 0.70 28.54 8.31 179.06 1.49 30.03 16 11 O -0.64 -30.57 15.82 -4.00 -0.06 -30.63 16 12 N -0.72 -30.24 5.46 -482.30 -2.63 -32.87 16 13 C 0.25 12.59 4.50 85.63 0.39 12.97 16 14 C -0.55 -30.29 9.83 25.60 0.25 -30.04 16 15 H 0.06 3.46 7.84 -2.91 -0.02 3.44 16 16 C 0.03 1.67 5.47 84.65 0.46 2.13 16 17 N -0.93 -55.25 13.96 21.45 0.30 -54.95 16 18 Si 0.94 44.16 27.47 68.60 1.88 46.04 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.26 -12.25 6.54 99.48 0.65 -11.60 16 22 H 0.25 3.21 7.80 -4.42 -0.03 3.17 16 23 H 0.13 2.04 8.13 -2.39 -0.02 2.02 16 24 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.14 1.73 8.14 -2.38 -0.02 1.71 16 27 H 0.08 1.81 8.08 -2.39 -0.02 1.79 16 28 H 0.10 2.19 5.78 -2.39 -0.01 2.18 16 29 H 0.40 14.86 5.88 -92.71 -0.54 14.31 16 30 H 0.01 0.71 7.20 -2.39 -0.02 0.69 16 31 H 0.01 0.43 7.57 -2.39 -0.02 0.42 16 32 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -71.69 277.13 2.27 -69.41 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.53 Total: 15.41 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: 6.04 Total: 18.98 kcal Atomic # 7 Polarization: -104.87 SS G_CDS: -4.54 Total: -109.41 kcal Atomic # 8 Polarization: -38.80 SS G_CDS: -1.63 Total: -40.44 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.88 Total: 46.04 kcal Total: -71.69 2.27 -69.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001564667670.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.649 kcal (2) G-P(sol) polarization free energy of solvation -71.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds