Wall clock time and date at job start Sun Mar 29 2020 22:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.40364 * 126.64747 * 2 1 4 4 C 1.35132 * 107.11651 * 180.02562 * 3 2 1 5 5 C 1.50700 * 125.61475 * 180.02562 * 4 3 2 6 6 N 1.46902 * 109.47123 * 90.00153 * 5 4 3 7 7 O 1.33929 * 108.76684 * 359.73749 * 4 3 2 8 8 C 1.34907 * 109.38596 * 0.43560 * 7 4 3 9 9 C 1.46651 * 125.99064 * 179.82821 * 8 7 4 10 10 O 1.21703 * 120.00169 * 179.69280 * 9 8 7 11 11 N 1.34773 * 119.99951 * 359.96633 * 9 8 7 12 12 C 1.46505 * 120.00095 * 179.72488 * 11 9 8 13 13 C 1.50705 * 109.46839 * 180.02562 * 12 11 9 14 14 H 1.07991 * 120.00292 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99469 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00089 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99513 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47070 * 90.00337 * 17 15 13 19 19 H 1.48504 * 109.46932 * 210.00282 * 17 15 13 20 20 H 1.48502 * 109.47188 * 329.99897 * 17 15 13 21 21 H 1.09002 * 109.47126 * 269.97074 * 1 2 3 22 22 H 1.08997 * 109.47601 * 29.96938 * 1 2 3 23 23 H 1.08997 * 109.47521 * 149.97487 * 1 2 3 24 24 H 1.08006 * 126.44048 * 0.02562 * 3 2 1 25 25 H 1.09001 * 109.46945 * 210.00141 * 5 4 3 26 26 H 1.08998 * 109.47671 * 330.00157 * 5 4 3 27 27 H 1.00901 * 111.00311 * 179.97438 * 6 5 4 28 28 H 1.00906 * 110.99941 * 303.95697 * 6 5 4 29 29 H 0.97000 * 120.00112 * 359.72923 * 11 9 8 30 30 H 1.09003 * 109.47169 * 299.99748 * 12 11 9 31 31 H 1.08993 * 109.47199 * 60.00009 * 12 11 9 32 32 H 0.97004 * 119.99534 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3447 1.1262 0.0000 4 6 3.6183 0.6744 -0.0006 5 6 4.8550 1.5356 -0.0002 6 7 5.2571 1.8145 1.3849 7 8 3.6005 -0.6648 0.0049 8 6 2.3220 -1.0956 -0.0006 9 6 1.8843 -2.4952 -0.0009 10 8 0.6967 -2.7614 -0.0005 11 7 2.7971 -3.4868 0.0041 12 6 2.3598 -4.8850 0.0099 13 6 3.5660 -5.7885 0.0153 14 1 4.5588 -5.3637 0.0141 15 6 3.4017 -7.1575 0.0219 16 7 2.1926 -7.6748 0.0239 17 14 4.8968 -8.2774 0.0278 18 1 5.2924 -8.5675 1.4295 19 1 4.5663 -9.5480 -0.6663 20 1 6.0202 -7.6071 -0.6751 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3634 0.8902 -0.5133 23 1 -0.3634 -0.8897 -0.5142 24 1 2.0306 2.1595 0.0004 25 1 5.6616 1.0133 -0.5146 26 1 4.6445 2.4740 -0.5133 27 1 6.0851 2.3906 1.4121 28 1 4.5025 2.2407 1.9017 29 1 3.7436 -3.2746 0.0038 30 1 1.7604 -5.0745 0.9004 31 1 1.7616 -5.0823 -0.8795 32 1 2.0772 -8.6379 0.0281 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579597548.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:26 Heat of formation + Delta-G solvation = -34.231013 kcal Electronic energy + Delta-G solvation = -16352.106192 eV Core-core repulsion = 13506.878949 eV Total energy + Delta-G solvation = -2845.227242 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.55906 -38.59056 -35.23080 -34.55536 -33.66796 -32.32037 -30.20720 -28.01095 -26.90408 -25.36036 -22.78059 -21.25244 -20.68268 -19.39052 -17.96088 -16.72688 -16.25602 -15.90012 -15.21789 -14.88397 -14.53175 -14.13775 -14.04129 -13.78224 -13.47729 -12.92400 -12.75061 -12.51712 -12.18643 -11.97422 -11.83427 -11.41247 -10.97739 -10.88027 -10.32050 -9.58273 -9.42294 -9.36205 -9.12243 -8.75623 -8.39665 -7.88058 -6.16181 -4.22914 1.31097 2.39493 2.82496 3.26420 3.32253 3.35220 3.76839 4.00709 4.31546 4.37629 4.59856 4.89828 4.94224 5.15315 5.20289 5.34810 5.51692 5.66258 5.89619 5.97151 6.14905 6.30231 6.57690 6.69115 6.99626 7.08060 7.26932 7.36747 7.48456 7.67210 7.95208 8.55172 8.72594 8.97183 9.43102 10.94098 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.028624 B = 0.005506 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.963998 B = 5084.310511 C = 5969.853488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.105 4.105 3 C -0.213 4.213 4 C 0.009 3.991 5 C 0.140 3.860 6 N -0.845 5.845 7 O -0.151 6.151 8 C -0.059 4.059 9 C 0.582 3.418 10 O -0.532 6.532 11 N -0.696 5.696 12 C 0.248 3.752 13 C -0.544 4.544 14 H 0.064 0.936 15 C 0.065 3.935 16 N -0.886 5.886 17 Si 0.905 3.095 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.272 1.272 21 H 0.070 0.930 22 H 0.061 0.939 23 H 0.088 0.912 24 H 0.149 0.851 25 H 0.093 0.907 26 H 0.062 0.938 27 H 0.349 0.651 28 H 0.346 0.654 29 H 0.396 0.604 30 H 0.032 0.968 31 H 0.032 0.968 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.856 19.459 -0.108 19.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C -0.234 4.234 4 C -0.045 4.045 5 C 0.010 3.990 6 N -0.378 5.378 7 O -0.046 6.046 8 C -0.112 4.112 9 C 0.366 3.634 10 O -0.413 6.413 11 N -0.343 5.343 12 C 0.128 3.872 13 C -0.582 4.582 14 H 0.082 0.918 15 C -0.139 4.139 16 N -0.523 5.523 17 Si 0.732 3.268 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 H 0.089 0.911 22 H 0.080 0.920 23 H 0.107 0.893 24 H 0.167 0.833 25 H 0.111 0.889 26 H 0.080 0.920 27 H 0.163 0.837 28 H 0.159 0.841 29 H 0.230 0.770 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.280 18.025 -0.055 18.321 hybrid contribution 0.976 0.587 -0.202 1.157 sum 4.256 18.612 -0.258 19.094 Atomic orbital electron populations 1.20368 0.88372 1.03306 1.02660 1.20524 0.97551 0.90838 1.01895 1.21387 0.91653 0.99752 1.10558 1.22398 0.96432 0.81261 1.04360 1.20136 0.92547 0.95376 0.90937 1.58574 1.10383 1.56182 1.12631 1.84046 1.28786 1.21591 1.70149 1.22470 0.80768 0.95748 1.12167 1.16653 0.86360 0.81581 0.78763 1.90803 1.15796 1.82103 1.52550 1.46472 1.09031 1.08416 1.70369 1.19231 0.96255 0.73649 0.98114 1.21218 0.92421 0.91263 1.53322 0.91766 1.24940 0.96391 0.97985 0.94603 1.69973 1.21011 1.12454 1.48873 0.86390 0.82277 0.79844 0.78273 1.20406 1.20981 1.19707 0.91139 0.92041 0.89290 0.83310 0.88869 0.92037 0.83656 0.84088 0.77029 0.95039 0.95042 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.30 9.81 36.00 0.35 -0.95 16 2 C -0.11 -1.68 6.20 -104.43 -0.65 -2.33 16 3 C -0.21 -2.74 10.73 -39.89 -0.43 -3.17 16 4 C 0.01 0.11 6.82 -35.41 -0.24 -0.13 16 5 C 0.14 1.26 7.31 -4.97 -0.04 1.23 16 6 N -0.85 -7.12 9.61 -11.41 -0.11 -7.23 16 7 O -0.15 -2.54 10.40 5.02 0.05 -2.48 16 8 C -0.06 -1.09 7.13 -36.80 -0.26 -1.35 16 9 C 0.58 12.81 7.79 -12.87 -0.10 12.71 16 10 O -0.53 -12.97 14.74 5.19 0.08 -12.90 16 11 N -0.70 -15.89 5.54 -62.80 -0.35 -16.23 16 12 C 0.25 6.71 5.43 -5.19 -0.03 6.68 16 13 C -0.54 -15.09 9.28 -34.44 -0.32 -15.41 16 14 H 0.06 1.69 7.60 -52.49 -0.40 1.29 16 15 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 16 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 17 Si 0.91 21.13 29.54 -169.99 -5.02 16.11 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.09 1.48 6.45 -51.93 -0.33 1.15 16 24 H 0.15 1.42 8.06 -52.48 -0.42 1.00 16 25 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.35 1.98 9.08 -39.29 -0.36 1.62 16 28 H 0.35 2.61 8.99 -39.29 -0.35 2.26 16 29 H 0.40 8.22 8.08 -40.82 -0.33 7.89 16 30 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 285.79 15.07 4.31 4.31 Total: -1.00 -32.47 285.79 -5.98 -38.45 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -3.87 Total: 6.45 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -1.81 Total: -0.99 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: 0.28 Total: -48.95 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: 0.13 Total: -15.38 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.47 -5.98 -38.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579597548.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.220 kcal (2) G-P(sol) polarization free energy of solvation -32.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds