Wall clock time and date at job start Sun Mar 29 2020 22:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.40364 * 126.64747 * 2 1 4 4 C 1.35132 * 107.11651 * 180.02562 * 3 2 1 5 5 C 1.50700 * 125.61475 * 180.02562 * 4 3 2 6 6 N 1.46902 * 109.47123 * 90.00153 * 5 4 3 7 7 O 1.33929 * 108.76684 * 359.73749 * 4 3 2 8 8 C 1.34907 * 109.38596 * 0.43560 * 7 4 3 9 9 C 1.46651 * 125.99064 * 179.82821 * 8 7 4 10 10 O 1.21703 * 120.00169 * 179.69280 * 9 8 7 11 11 N 1.34773 * 119.99951 * 359.96633 * 9 8 7 12 12 C 1.46505 * 120.00095 * 179.72488 * 11 9 8 13 13 C 1.50705 * 109.46839 * 180.02562 * 12 11 9 14 14 H 1.07991 * 120.00292 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99469 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00089 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99513 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47070 * 90.00337 * 17 15 13 19 19 H 1.48504 * 109.46932 * 210.00282 * 17 15 13 20 20 H 1.48502 * 109.47188 * 329.99897 * 17 15 13 21 21 H 1.09002 * 109.47126 * 269.97074 * 1 2 3 22 22 H 1.08997 * 109.47601 * 29.96938 * 1 2 3 23 23 H 1.08997 * 109.47521 * 149.97487 * 1 2 3 24 24 H 1.08006 * 126.44048 * 0.02562 * 3 2 1 25 25 H 1.09001 * 109.46945 * 210.00141 * 5 4 3 26 26 H 1.08998 * 109.47671 * 330.00157 * 5 4 3 27 27 H 1.00901 * 111.00311 * 179.97438 * 6 5 4 28 28 H 1.00906 * 110.99941 * 303.95697 * 6 5 4 29 29 H 0.97000 * 120.00112 * 359.72923 * 11 9 8 30 30 H 1.09003 * 109.47169 * 299.99748 * 12 11 9 31 31 H 1.08993 * 109.47199 * 60.00009 * 12 11 9 32 32 H 0.97004 * 119.99534 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3447 1.1262 0.0000 4 6 3.6183 0.6744 -0.0006 5 6 4.8550 1.5356 -0.0002 6 7 5.2571 1.8145 1.3849 7 8 3.6005 -0.6648 0.0049 8 6 2.3220 -1.0956 -0.0006 9 6 1.8843 -2.4952 -0.0009 10 8 0.6967 -2.7614 -0.0005 11 7 2.7971 -3.4868 0.0041 12 6 2.3598 -4.8850 0.0099 13 6 3.5660 -5.7885 0.0153 14 1 4.5588 -5.3637 0.0141 15 6 3.4017 -7.1575 0.0219 16 7 2.1926 -7.6748 0.0239 17 14 4.8968 -8.2774 0.0278 18 1 5.2924 -8.5675 1.4295 19 1 4.5663 -9.5480 -0.6663 20 1 6.0202 -7.6071 -0.6751 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3634 0.8902 -0.5133 23 1 -0.3634 -0.8897 -0.5142 24 1 2.0306 2.1595 0.0004 25 1 5.6616 1.0133 -0.5146 26 1 4.6445 2.4740 -0.5133 27 1 6.0851 2.3906 1.4121 28 1 4.5025 2.2407 1.9017 29 1 3.7436 -3.2746 0.0038 30 1 1.7604 -5.0745 0.9004 31 1 1.7616 -5.0823 -0.8795 32 1 2.0772 -8.6379 0.0281 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579597548.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:26 Heat of formation + Delta-G solvation = -60.318091 kcal Electronic energy + Delta-G solvation = -16353.237412 eV Core-core repulsion = 13506.878949 eV Total energy + Delta-G solvation = -2846.358463 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.76233 -40.37340 -36.40567 -35.97419 -35.06797 -34.35680 -31.34936 -29.74136 -28.35207 -26.52583 -24.67088 -22.44085 -22.19904 -20.82334 -19.55575 -18.11138 -17.69195 -17.18473 -17.09105 -16.29332 -16.05374 -15.58042 -15.24279 -14.87403 -14.61407 -14.21969 -14.10674 -14.02259 -13.90081 -13.64792 -13.25179 -12.95248 -12.73398 -12.46568 -12.25191 -11.53571 -11.13449 -10.84608 -10.67822 -10.08440 -9.75449 -9.44752 -8.31932 -6.48884 -0.01109 1.28677 1.41946 1.44823 1.55886 1.62749 2.12398 2.29255 2.50289 3.02891 3.47286 3.75820 3.80528 3.90925 4.32151 4.38398 4.47728 4.62717 4.73946 4.76996 5.01366 5.08007 5.17404 5.19388 5.34818 5.47317 5.58125 5.77902 5.92432 6.12839 6.57574 6.57976 6.72786 7.11330 7.27153 8.80349 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.028624 B = 0.005506 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.963998 B = 5084.310511 C = 5969.853488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.092 4.092 3 C -0.210 4.210 4 C 0.023 3.977 5 C 0.141 3.859 6 N -0.860 5.860 7 O -0.168 6.168 8 C -0.109 4.109 9 C 0.582 3.418 10 O -0.568 6.568 11 N -0.698 5.698 12 C 0.266 3.734 13 C -0.561 4.561 14 H 0.079 0.921 15 C 0.008 3.992 16 N -0.928 5.928 17 Si 0.986 3.014 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.258 1.258 21 H 0.077 0.923 22 H 0.098 0.902 23 H 0.058 0.942 24 H 0.192 0.808 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.366 0.634 28 H 0.352 0.648 29 H 0.406 0.594 30 H -0.004 1.004 31 H -0.003 1.003 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.924 21.910 -0.130 22.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.229 4.229 4 C -0.030 4.030 5 C 0.011 3.989 6 N -0.395 5.395 7 O -0.064 6.064 8 C -0.160 4.160 9 C 0.369 3.631 10 O -0.451 6.451 11 N -0.345 5.345 12 C 0.144 3.856 13 C -0.599 4.599 14 H 0.097 0.903 15 C -0.192 4.192 16 N -0.566 5.566 17 Si 0.809 3.191 18 H -0.195 1.195 19 H -0.205 1.205 20 H -0.182 1.182 21 H 0.095 0.905 22 H 0.117 0.883 23 H 0.077 0.923 24 H 0.209 0.791 25 H 0.113 0.887 26 H 0.118 0.882 27 H 0.183 0.817 28 H 0.166 0.834 29 H 0.242 0.758 30 H 0.014 0.986 31 H 0.015 0.985 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.372 20.523 -0.074 21.215 hybrid contribution 0.315 0.011 -0.185 0.365 sum 5.687 20.535 -0.259 21.309 Atomic orbital electron populations 1.20423 0.87628 1.03635 1.03146 1.20970 0.98333 0.91218 0.98951 1.21783 0.90569 1.00663 1.09886 1.23461 0.98588 0.80038 1.00943 1.20376 0.90792 0.95970 0.91802 1.58504 1.11462 1.57220 1.12331 1.84015 1.27843 1.23728 1.70854 1.21713 0.82375 0.94143 1.17818 1.17080 0.85728 0.83063 0.77218 1.90765 1.17113 1.83330 1.53874 1.46209 1.09791 1.07079 1.71467 1.18697 0.95749 0.76339 0.94842 1.21564 0.92879 0.91881 1.53575 0.90300 1.26038 0.99873 0.99721 0.93580 1.70123 1.23772 1.13125 1.49567 0.85136 0.78007 0.77248 0.78706 1.19474 1.20503 1.18208 0.90477 0.88301 0.92300 0.79088 0.88713 0.88185 0.81747 0.83442 0.75842 0.98583 0.98479 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.55 9.81 71.23 0.70 -1.85 16 2 C -0.09 -2.81 6.20 -19.74 -0.12 -2.93 16 3 C -0.21 -4.63 10.73 22.07 0.24 -4.39 16 4 C 0.02 0.53 6.82 24.97 0.17 0.70 16 5 C 0.14 1.98 7.31 85.56 0.63 2.61 16 6 N -0.86 -11.52 9.61 -190.00 -1.83 -13.34 16 7 O -0.17 -5.54 10.40 -4.96 -0.05 -5.59 16 8 C -0.11 -4.07 7.13 24.07 0.17 -3.90 16 9 C 0.58 27.01 7.79 86.44 0.67 27.68 16 10 O -0.57 -29.58 14.74 -4.36 -0.06 -29.64 16 11 N -0.70 -33.59 5.54 -470.83 -2.61 -36.20 16 12 C 0.27 15.31 5.43 85.63 0.46 15.78 16 13 C -0.56 -31.93 9.28 25.60 0.24 -31.69 16 14 H 0.08 4.15 7.60 -2.92 -0.02 4.13 16 15 C 0.01 0.45 5.46 84.66 0.46 0.91 16 16 N -0.93 -56.61 13.29 21.45 0.28 -56.32 16 17 Si 0.99 43.36 29.54 68.60 2.03 45.38 16 18 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 19 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 20 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 21 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 22 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.06 2.02 6.45 -2.39 -0.02 2.00 16 24 H 0.19 2.54 8.06 -2.91 -0.02 2.51 16 25 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.37 2.86 9.08 -89.69 -0.81 2.04 16 28 H 0.35 4.04 8.99 -89.69 -0.81 3.24 16 29 H 0.41 17.52 8.08 -92.71 -0.75 16.77 16 30 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 31 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 32 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -74.19 285.79 0.18 -74.01 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -1.20 Total: 18.79 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 3.62 Total: 2.92 kcal Atomic # 7 Polarization: -101.71 SS G_CDS: -4.15 Total: -105.86 kcal Atomic # 8 Polarization: -35.12 SS G_CDS: -0.12 Total: -35.24 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -74.19 0.18 -74.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579597548.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.690 kcal (2) G-P(sol) polarization free energy of solvation -74.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds