Wall clock time and date at job start Sun Mar 29 2020 22:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47031 * 2 1 4 4 C 1.50706 * 109.46914 * 179.97438 * 3 2 1 5 5 C 1.35287 * 126.65205 * 90.28153 * 4 3 2 6 6 C 1.42333 * 103.92439 * 180.11409 * 5 4 3 7 7 C 1.48159 * 126.94772 * 179.88414 * 6 5 4 8 8 O 1.21548 * 119.99967 * 353.72447 * 7 6 5 9 9 N 1.34775 * 120.00000 * 173.72625 * 7 6 5 10 10 C 1.46506 * 120.00097 * 3.80131 * 9 7 6 11 11 C 1.36780 * 120.00161 * 183.80578 * 9 7 6 12 12 H 1.07997 * 120.00408 * 33.43232 * 11 9 7 13 13 C 1.39119 * 119.99615 * 213.43689 * 11 9 7 14 14 N 1.31309 * 120.00404 * 5.75211 * 13 11 9 15 15 Si 1.86807 * 119.99648 * 185.75135 * 13 11 9 16 16 H 1.48498 * 109.46975 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.46993 * 120.00212 * 15 13 11 18 18 H 1.48499 * 109.46749 * 240.00320 * 15 13 11 19 19 N 1.31075 * 106.09870 * 359.62725 * 6 5 4 20 20 O 1.20898 * 111.42046 * 0.23664 * 19 6 5 21 21 H 1.09003 * 109.47037 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47134 * 299.99787 * 1 2 3 23 23 H 1.08998 * 109.47376 * 60.00093 * 1 2 3 24 24 H 1.09000 * 109.47134 * 240.00213 * 2 1 3 25 25 H 1.09003 * 109.47284 * 120.00381 * 2 1 3 26 26 H 1.08998 * 109.47289 * 60.00835 * 3 2 1 27 27 H 1.08996 * 109.47791 * 299.99770 * 3 2 1 28 28 H 1.08001 * 128.03694 * 359.97438 * 5 4 3 29 29 H 1.08991 * 109.46966 * 84.52208 * 10 9 7 30 30 H 1.08995 * 109.47001 * 204.52603 * 10 9 7 31 31 H 1.09003 * 109.46675 * 324.52207 * 10 9 7 32 32 H 0.97001 * 120.00366 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3550 1.4476 -1.0844 6 6 5.6676 1.4422 -0.5339 7 6 6.9468 1.4422 -1.2815 8 8 6.9433 1.3321 -2.4919 9 7 8.1143 1.5643 -0.6193 10 6 8.1243 1.6131 0.8450 11 6 9.2898 1.6426 -1.3142 12 1 9.3164 2.1308 -2.2771 13 6 10.4512 1.0932 -0.7805 14 7 10.3983 0.4020 0.3347 15 14 12.0859 1.3389 -1.6505 16 1 11.8767 2.1481 -2.8779 17 1 13.0271 2.0458 -0.7452 18 1 12.6533 0.0173 -2.0203 19 7 5.5158 1.4429 0.7680 20 8 4.3467 1.4431 1.0762 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9564 -0.8899 28 1 4.0703 1.4522 -2.1262 29 1 8.1166 0.5983 1.2424 30 1 9.0217 2.1298 1.1851 31 1 7.2419 2.1478 1.1966 32 1 11.2081 0.0192 0.7070 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598387127.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:42 Heat of formation + Delta-G solvation = 27.246528 kcal Electronic energy + Delta-G solvation = -16691.049085 eV Core-core repulsion = 13848.487709 eV Total energy + Delta-G solvation = -2842.561376 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.46090 -38.29111 -35.69979 -34.71883 -33.26420 -31.82950 -31.13141 -26.99357 -26.34317 -25.19062 -23.14017 -22.25357 -21.44675 -18.92282 -17.21474 -17.02614 -16.67639 -15.91829 -15.28161 -14.87736 -14.09665 -13.93921 -13.80060 -13.47786 -13.20415 -12.56779 -12.48612 -11.82912 -11.71188 -11.60899 -11.48761 -11.28757 -11.06851 -10.86099 -10.60555 -10.37153 -10.17584 -9.69037 -9.05480 -8.99500 -8.72525 -7.64282 -6.40226 -4.02859 1.75758 2.29617 3.15707 3.22266 3.29045 3.39149 4.03223 4.27965 4.49794 4.65972 4.84412 4.85723 5.05306 5.10935 5.23267 5.45188 5.52424 5.59191 5.61573 5.78183 5.86540 6.02688 6.05811 6.11533 6.38050 6.70042 6.93484 7.27779 7.46791 8.10226 8.38947 8.68333 9.08195 9.28096 9.88975 10.63713 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.060622 B = 0.005191 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.768093 B = 5392.377034 C = 5630.292681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.033 4.033 4 C -0.052 4.052 5 C -0.187 4.187 6 C 0.008 3.992 7 C 0.506 3.494 8 O -0.578 6.578 9 N -0.415 5.415 10 C 0.103 3.897 11 C -0.309 4.309 12 H 0.099 0.901 13 C 0.037 3.963 14 N -0.868 5.868 15 Si 0.932 3.068 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.279 1.279 19 N -0.339 5.339 20 O 0.096 5.904 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.171 0.829 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.763 1.222 2.755 15.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.071 4.071 4 C -0.115 4.115 5 C -0.210 4.210 6 C -0.151 4.151 7 C 0.293 3.707 8 O -0.462 6.462 9 N -0.132 5.132 10 C -0.041 4.041 11 C -0.438 4.438 12 H 0.116 0.884 13 C -0.169 4.169 14 N -0.506 5.506 15 Si 0.758 3.242 16 H -0.189 1.189 17 H -0.205 1.205 18 H -0.204 1.204 19 N -0.046 5.046 20 O 0.028 5.972 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.104 0.896 27 H 0.112 0.888 28 H 0.189 0.811 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.728 1.073 3.322 14.165 hybrid contribution 0.601 -0.055 -0.937 1.114 sum -13.127 1.018 2.386 13.381 Atomic orbital electron populations 1.21763 0.95179 1.01958 1.01945 1.21569 0.95950 0.95470 1.03246 1.20127 0.84104 0.98550 1.04353 1.24305 0.95744 1.05164 0.86323 1.22370 0.90446 1.07265 1.00876 1.24056 0.97638 1.03982 0.89442 1.16910 0.81478 0.85595 0.86736 1.90608 1.85972 1.56667 1.12992 1.43422 1.04705 1.58782 1.06284 1.21818 1.00121 1.01628 0.80504 1.19689 0.84038 1.35328 1.04705 0.88370 1.25577 1.00446 0.94487 0.96356 1.69928 1.29544 1.31700 1.19404 0.85779 0.80632 0.78364 0.79455 1.18948 1.20467 1.20430 1.74459 0.95517 1.18490 1.16137 1.84772 1.11831 1.67055 1.33499 0.92464 0.92520 0.92532 0.91262 0.91314 0.89618 0.88812 0.81111 0.92646 0.91446 0.92929 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.15 0.37 -0.67 16 2 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 3 C -0.03 -0.32 5.78 -27.88 -0.16 -0.48 16 4 C -0.05 -0.77 6.73 -35.36 -0.24 -1.01 16 5 C -0.19 -3.35 10.93 -39.06 -0.43 -3.78 16 6 C 0.01 0.18 6.87 -82.54 -0.57 -0.39 16 7 C 0.51 13.73 7.64 -12.19 -0.09 13.63 16 8 O -0.58 -17.06 16.80 5.32 0.09 -16.97 16 9 N -0.41 -11.56 2.97 -123.17 -0.37 -11.92 16 10 C 0.10 2.58 7.96 59.85 0.48 3.06 16 11 C -0.31 -8.93 9.01 -15.02 -0.14 -9.06 16 12 H 0.10 2.89 7.64 -52.49 -0.40 2.49 16 13 C 0.04 1.01 5.16 -17.45 -0.09 0.92 16 14 N -0.87 -23.99 11.07 55.50 0.61 -23.37 16 15 Si 0.93 20.92 29.56 -169.99 -5.02 15.90 16 16 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 17 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 N -0.34 -7.05 8.69 33.29 0.29 -6.76 16 20 O 0.10 1.67 11.18 17.21 0.19 1.86 16 21 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 22 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.17 2.76 8.06 -52.49 -0.42 2.34 16 29 H 0.05 1.45 7.77 -51.93 -0.40 1.04 16 30 H 0.07 1.71 7.17 -51.93 -0.37 1.34 16 31 H 0.05 1.21 5.31 -51.93 -0.28 0.94 16 32 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 278.75 15.07 4.20 4.20 Total: -1.00 -32.45 278.75 -5.00 -37.44 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -3.97 Total: -1.33 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -1.02 Total: 0.95 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 0.54 Total: -42.06 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: 0.28 Total: -15.11 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.45 -5.00 -37.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598387127.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.691 kcal (2) G-P(sol) polarization free energy of solvation -32.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds