Wall clock time and date at job start Sun Mar 29 2020 22:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47031 * 2 1 4 4 C 1.50706 * 109.46914 * 179.97438 * 3 2 1 5 5 C 1.35287 * 126.65205 * 90.28153 * 4 3 2 6 6 C 1.42333 * 103.92439 * 180.11409 * 5 4 3 7 7 C 1.48159 * 126.94772 * 179.88414 * 6 5 4 8 8 O 1.21548 * 119.99967 * 353.72447 * 7 6 5 9 9 N 1.34775 * 120.00000 * 173.72625 * 7 6 5 10 10 C 1.46506 * 120.00097 * 3.80131 * 9 7 6 11 11 C 1.36780 * 120.00161 * 183.80578 * 9 7 6 12 12 H 1.07997 * 120.00408 * 33.43232 * 11 9 7 13 13 C 1.39119 * 119.99615 * 213.43689 * 11 9 7 14 14 N 1.31309 * 120.00404 * 5.75211 * 13 11 9 15 15 Si 1.86807 * 119.99648 * 185.75135 * 13 11 9 16 16 H 1.48498 * 109.46975 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.46993 * 120.00212 * 15 13 11 18 18 H 1.48499 * 109.46749 * 240.00320 * 15 13 11 19 19 N 1.31075 * 106.09870 * 359.62725 * 6 5 4 20 20 O 1.20898 * 111.42046 * 0.23664 * 19 6 5 21 21 H 1.09003 * 109.47037 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47134 * 299.99787 * 1 2 3 23 23 H 1.08998 * 109.47376 * 60.00093 * 1 2 3 24 24 H 1.09000 * 109.47134 * 240.00213 * 2 1 3 25 25 H 1.09003 * 109.47284 * 120.00381 * 2 1 3 26 26 H 1.08998 * 109.47289 * 60.00835 * 3 2 1 27 27 H 1.08996 * 109.47791 * 299.99770 * 3 2 1 28 28 H 1.08001 * 128.03694 * 359.97438 * 5 4 3 29 29 H 1.08991 * 109.46966 * 84.52208 * 10 9 7 30 30 H 1.08995 * 109.47001 * 204.52603 * 10 9 7 31 31 H 1.09003 * 109.46675 * 324.52207 * 10 9 7 32 32 H 0.97001 * 120.00366 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3550 1.4476 -1.0844 6 6 5.6676 1.4422 -0.5339 7 6 6.9468 1.4422 -1.2815 8 8 6.9433 1.3321 -2.4919 9 7 8.1143 1.5643 -0.6193 10 6 8.1243 1.6131 0.8450 11 6 9.2898 1.6426 -1.3142 12 1 9.3164 2.1308 -2.2771 13 6 10.4512 1.0932 -0.7805 14 7 10.3983 0.4020 0.3347 15 14 12.0859 1.3389 -1.6505 16 1 11.8767 2.1481 -2.8779 17 1 13.0271 2.0458 -0.7452 18 1 12.6533 0.0173 -2.0203 19 7 5.5158 1.4429 0.7680 20 8 4.3467 1.4431 1.0762 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9564 -0.8899 28 1 4.0703 1.4522 -2.1262 29 1 8.1166 0.5983 1.2424 30 1 9.0217 2.1298 1.1851 31 1 7.2419 2.1478 1.1966 32 1 11.2081 0.0192 0.7070 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598387127.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:41 Heat of formation + Delta-G solvation = 6.517816 kcal Electronic energy + Delta-G solvation = -16691.947950 eV Core-core repulsion = 13848.487709 eV Total energy + Delta-G solvation = -2843.460240 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -46.02812 -40.37805 -36.90682 -36.50852 -34.91773 -33.71926 -32.49143 -28.50292 -27.86241 -27.17084 -24.94791 -23.53292 -22.49450 -20.63878 -19.07691 -18.76676 -18.29237 -17.73346 -16.88495 -16.11490 -15.94137 -15.83794 -15.24870 -14.57235 -14.49693 -14.09973 -13.90639 -13.63685 -13.33840 -13.05830 -12.81886 -12.67715 -12.47960 -12.13781 -12.12490 -11.96185 -11.49425 -11.33470 -11.11405 -10.87834 -10.34236 -9.79094 -8.48166 -6.23033 0.23959 0.77004 1.36972 1.39096 1.53412 2.08589 2.20026 2.28008 2.68311 2.99603 3.19030 3.64062 4.00686 4.14918 4.16375 4.21946 4.35421 4.63400 4.72831 4.82893 4.86290 4.91956 5.01511 5.03253 5.17927 5.29960 5.32454 5.36260 5.52420 5.96799 6.29073 6.93474 7.14199 7.23270 7.77520 8.56194 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.060622 B = 0.005191 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.768093 B = 5392.377034 C = 5630.292681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C -0.031 4.031 4 C -0.016 4.016 5 C -0.200 4.200 6 C -0.031 4.031 7 C 0.497 3.503 8 O -0.615 6.615 9 N -0.433 5.433 10 C 0.122 3.878 11 C -0.353 4.353 12 H 0.079 0.921 13 C 0.001 3.999 14 N -0.891 5.891 15 Si 1.004 2.996 16 H -0.267 1.267 17 H -0.260 1.260 18 H -0.272 1.272 19 N -0.354 5.354 20 O 0.118 5.882 21 H 0.058 0.942 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.113 0.887 27 H 0.119 0.881 28 H 0.185 0.815 29 H 0.039 0.961 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.400 1.479 3.386 16.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.162 4.162 3 C -0.068 4.068 4 C -0.079 4.079 5 C -0.223 4.223 6 C -0.188 4.188 7 C 0.285 3.715 8 O -0.501 6.501 9 N -0.150 5.150 10 C -0.021 4.021 11 C -0.481 4.481 12 H 0.097 0.903 13 C -0.202 4.202 14 N -0.528 5.528 15 Si 0.825 3.175 16 H -0.191 1.191 17 H -0.185 1.185 18 H -0.197 1.197 19 N -0.057 5.057 20 O 0.045 5.955 21 H 0.077 0.923 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.131 0.869 27 H 0.137 0.863 28 H 0.202 0.798 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.337 1.329 3.977 15.900 hybrid contribution 0.907 -0.169 -1.065 1.410 sum -14.430 1.160 2.912 14.766 Atomic orbital electron populations 1.21731 0.93216 1.02486 1.02980 1.21567 0.97579 0.94639 1.02465 1.20500 0.79751 0.99626 1.06972 1.25132 0.97500 1.01195 0.84104 1.22560 0.88839 1.08405 1.02501 1.23645 0.97190 1.07507 0.90432 1.17513 0.82853 0.84331 0.86772 1.90545 1.87028 1.57949 1.14623 1.43671 1.04961 1.59260 1.07131 1.21634 1.00491 1.00659 0.79286 1.19775 0.85592 1.37702 1.05040 0.90267 1.26483 1.03568 0.93321 0.96871 1.70001 1.31007 1.31592 1.20199 0.84743 0.75829 0.78550 0.78370 1.19092 1.18489 1.19690 1.74380 0.97356 1.18512 1.15454 1.84731 1.11046 1.65568 1.34187 0.92292 0.91394 0.91599 0.92302 0.92043 0.86912 0.86274 0.79795 0.94245 0.92395 0.91018 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 71.98 0.71 -0.77 16 2 C -0.12 -1.83 5.92 30.59 0.18 -1.65 16 3 C -0.03 -0.46 5.78 29.85 0.17 -0.29 16 4 C -0.02 -0.42 6.73 25.01 0.17 -0.26 16 5 C -0.20 -6.96 10.93 22.61 0.25 -6.71 16 6 C -0.03 -1.40 6.87 42.91 0.29 -1.11 16 7 C 0.50 28.02 7.64 86.88 0.66 28.69 16 8 O -0.61 -37.87 16.80 -3.87 -0.06 -37.94 16 9 N -0.43 -25.11 2.97 -661.88 -1.97 -27.07 16 10 C 0.12 6.32 7.96 127.77 1.02 7.34 16 11 C -0.35 -21.22 9.01 84.13 0.76 -20.46 16 12 H 0.08 4.92 7.64 -2.91 -0.02 4.90 16 13 C 0.00 0.06 5.16 84.98 0.44 0.50 16 14 N -0.89 -49.86 11.07 21.69 0.24 -49.62 16 15 Si 1.00 43.20 29.56 68.60 2.03 45.23 16 16 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 17 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 18 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 19 N -0.35 -14.58 8.69 -49.48 -0.43 -15.01 16 20 O 0.12 3.84 11.18 71.77 0.80 4.64 16 21 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 22 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 23 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.18 5.77 8.06 -2.91 -0.02 5.75 16 29 H 0.04 2.12 7.77 -2.39 -0.02 2.10 16 30 H 0.06 3.03 7.17 -2.39 -0.02 3.01 16 31 H 0.07 3.37 5.31 -2.39 -0.01 3.36 16 32 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -73.13 278.75 6.38 -66.75 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 1.12 Total: 7.74 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 4.66 Total: 5.29 kcal Atomic # 7 Polarization: -89.55 SS G_CDS: -2.16 Total: -91.71 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: 0.74 Total: -33.30 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -73.13 6.38 -66.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598387127.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.269 kcal (2) G-P(sol) polarization free energy of solvation -73.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds