Wall clock time and date at job start Sun Mar 29 2020 22:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30154 * 125.48979 * 2 1 4 4 C 1.35803 * 108.86064 * 180.27621 * 3 2 1 5 5 C 1.47170 * 126.25004 * 179.77028 * 4 3 2 6 6 O 1.21541 * 119.99935 * 179.97438 * 5 4 3 7 7 O 1.34791 * 119.99977 * 359.97438 * 5 4 3 8 8 C 1.36506 * 107.50233 * 359.74856 * 4 3 2 9 9 N 1.35321 * 106.87092 * 359.97438 * 8 4 3 10 10 C 1.46500 * 126.12933 * 179.97438 * 9 8 4 11 11 C 1.52997 * 109.47473 * 265.02744 * 10 9 8 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00327 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99743 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46725 * 60.00093 * 17 15 13 19 19 H 1.48505 * 109.46988 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47116 * 300.00069 * 17 15 13 21 21 H 1.09000 * 109.47224 * 270.14936 * 1 2 3 22 22 H 1.08997 * 109.47221 * 30.15030 * 1 2 3 23 23 H 1.09000 * 109.46962 * 150.14938 * 1 2 3 24 24 H 0.96691 * 117.00070 * 180.02562 * 7 5 4 25 25 H 1.08003 * 126.55929 * 180.02562 * 8 4 3 26 26 H 1.09002 * 109.47129 * 145.02486 * 10 9 8 27 27 H 1.08998 * 109.46845 * 25.03293 * 10 9 8 28 28 H 1.09002 * 109.47153 * 59.99757 * 11 10 9 29 29 H 1.09001 * 109.46832 * 299.99948 * 11 10 9 30 30 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 31 31 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 32 32 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2626 1.0597 0.0000 4 6 3.5638 0.6711 -0.0062 5 6 4.7373 1.5593 -0.0131 6 8 5.8571 1.0867 -0.0178 7 8 4.5702 2.8968 -0.0141 8 6 3.5847 -0.6938 -0.0044 9 7 2.2959 -1.1062 0.0035 10 6 1.8338 -2.4964 0.0075 11 6 1.5460 -2.9425 -1.4275 12 6 1.0629 -4.3942 -1.4231 13 6 0.7800 -4.8336 -2.8366 14 1 0.9295 -4.1462 -3.6559 15 6 0.3304 -6.1135 -3.0837 16 7 0.1489 -6.9508 -2.0859 17 14 -0.0209 -6.6580 -4.8357 18 1 1.2194 -6.5508 -5.6454 19 1 -0.4886 -8.0675 -4.8316 20 1 -1.0721 -5.7889 -5.4228 21 1 -0.3634 0.0027 1.0277 22 1 -0.3633 0.8886 -0.5161 23 1 -0.3633 -0.8913 -0.5115 24 1 5.3706 3.4392 -0.0191 25 1 4.4619 -1.3238 -0.0077 26 1 0.9235 -2.5751 0.6019 27 1 2.6053 -3.1344 0.4385 28 1 2.4563 -2.8638 -2.0219 29 1 0.7744 -2.3044 -1.8584 30 1 1.8341 -5.0325 -0.9920 31 1 0.1526 -4.4724 -0.8288 32 1 -0.1670 -7.8513 -2.2598 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600685585.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:13 Heat of formation + Delta-G solvation = -54.427594 kcal Electronic energy + Delta-G solvation = -16159.214063 eV Core-core repulsion = 13313.111032 eV Total energy + Delta-G solvation = -2846.103032 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.25553 -39.72882 -36.00275 -35.52426 -33.24610 -31.90065 -31.14568 -27.45581 -27.19426 -24.44857 -23.18843 -20.81412 -20.55855 -19.83495 -17.96833 -17.32718 -16.40266 -15.96598 -15.64022 -15.02750 -14.56986 -14.52052 -13.93603 -13.58192 -13.05940 -12.99288 -12.49632 -12.29576 -12.15535 -11.79922 -11.52537 -11.11345 -10.96549 -10.81443 -10.73315 -10.22580 -10.02215 -9.93745 -9.50230 -9.23591 -8.50442 -8.49554 -6.14897 -4.18500 1.40839 2.28984 2.62601 3.21530 3.25435 3.30398 3.32966 3.37857 4.34416 4.34747 4.70351 4.89149 5.17173 5.21781 5.34982 5.39695 5.52732 5.59968 5.62400 5.85441 6.01563 6.27818 6.34655 6.44363 6.52943 6.72644 7.07897 7.42993 7.52299 7.74708 7.81917 8.08168 8.22434 8.87138 9.47036 10.96175 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.037837 B = 0.004445 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.847700 B = 6297.971143 C = 6547.926900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.213 3.787 3 N -0.450 5.450 4 C -0.068 4.068 5 C 0.578 3.422 6 O -0.526 6.526 7 O -0.501 6.501 8 C 0.054 3.946 9 N -0.439 5.439 10 C 0.093 3.907 11 C -0.125 4.125 12 C 0.025 3.975 13 C -0.526 4.526 14 H 0.055 0.945 15 C 0.060 3.940 16 N -0.894 5.894 17 Si 0.894 3.106 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 H 0.081 0.919 22 H 0.091 0.909 23 H 0.084 0.916 24 H 0.408 0.592 25 H 0.190 0.810 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.370 12.928 5.826 14.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.052 4.052 3 N -0.170 5.170 4 C -0.195 4.195 5 C 0.422 3.578 6 O -0.415 6.415 7 O -0.310 6.310 8 C -0.088 4.088 9 N -0.118 5.118 10 C -0.027 4.027 11 C -0.163 4.163 12 C -0.012 4.012 13 C -0.564 4.564 14 H 0.074 0.926 15 C -0.142 4.142 16 N -0.533 5.533 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.201 1.201 21 H 0.100 0.900 22 H 0.110 0.890 23 H 0.103 0.897 24 H 0.265 0.735 25 H 0.207 0.793 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.038 0.962 31 H 0.039 0.961 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.921 13.065 5.886 14.625 hybrid contribution 0.715 -0.932 -0.971 1.524 sum 3.636 12.133 4.915 13.586 Atomic orbital electron populations 1.20290 0.84227 1.04818 1.03734 1.23557 0.96116 0.80656 1.04835 1.70644 1.00246 1.27969 1.18144 1.19166 0.90891 0.90196 1.19240 1.19336 0.86742 0.80492 0.71204 1.90905 1.25482 1.76980 1.48143 1.84696 1.42263 1.18502 1.85573 1.22571 0.88349 0.95002 1.02886 1.45752 1.05692 1.09348 1.50994 1.22499 1.01794 0.76471 1.01985 1.22093 1.01488 1.01264 0.91453 1.19047 0.96542 0.87808 0.97816 1.21111 1.45023 0.97659 0.92615 0.92640 1.24999 0.95324 0.96663 0.97212 1.69931 1.46043 1.06369 1.30936 0.86624 0.78813 0.77675 0.84737 1.20168 1.21167 1.20128 0.90024 0.89048 0.89685 0.73469 0.79301 0.88520 0.88600 0.92332 0.92224 0.96195 0.96125 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.03 36.01 0.36 -0.43 16 2 C 0.21 3.08 7.89 -154.94 -1.22 1.86 16 3 N -0.45 -7.34 11.33 -7.24 -0.08 -7.43 16 4 C -0.07 -1.07 7.02 -83.11 -0.58 -1.65 16 5 C 0.58 8.53 8.33 34.36 0.29 8.82 16 6 O -0.53 -8.50 17.67 -19.30 -0.34 -8.85 16 7 O -0.50 -6.04 13.44 -40.74 -0.55 -6.59 16 8 C 0.05 0.78 11.25 -16.64 -0.19 0.59 16 9 N -0.44 -6.27 2.72 -113.70 -0.31 -6.58 16 10 C 0.09 1.30 5.64 -4.04 -0.02 1.27 16 11 C -0.12 -2.22 5.48 -26.73 -0.15 -2.37 16 12 C 0.03 0.59 4.97 -27.88 -0.14 0.45 16 13 C -0.53 -13.96 9.11 -34.44 -0.31 -14.28 16 14 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 17 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.08 0.92 7.28 -51.93 -0.38 0.55 16 24 H 0.41 2.62 9.11 45.56 0.42 3.04 16 25 H 0.19 2.31 8.06 -52.48 -0.42 1.89 16 26 H 0.10 1.21 7.91 -51.93 -0.41 0.80 16 27 H 0.10 1.23 8.13 -51.93 -0.42 0.81 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 1.06 7.61 -51.93 -0.40 0.67 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 289.35 15.07 4.36 4.36 Total: -1.00 -32.57 289.35 -6.54 -39.11 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -3.27 Total: -0.90 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -2.07 Total: -4.20 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.34 Total: -38.73 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.89 Total: -15.43 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.57 -6.54 -39.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600685585.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.321 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds