Wall clock time and date at job start Sun Mar 29 2020 22:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30154 * 125.48979 * 2 1 4 4 C 1.35803 * 108.86064 * 180.27621 * 3 2 1 5 5 C 1.47170 * 126.25004 * 179.77028 * 4 3 2 6 6 O 1.21541 * 119.99935 * 179.97438 * 5 4 3 7 7 O 1.34791 * 119.99977 * 359.97438 * 5 4 3 8 8 C 1.36506 * 107.50233 * 359.74856 * 4 3 2 9 9 N 1.35321 * 106.87092 * 359.97438 * 8 4 3 10 10 C 1.46500 * 126.12933 * 179.97438 * 9 8 4 11 11 C 1.52997 * 109.47473 * 265.02744 * 10 9 8 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00327 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99743 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46725 * 60.00093 * 17 15 13 19 19 H 1.48505 * 109.46988 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47116 * 300.00069 * 17 15 13 21 21 H 1.09000 * 109.47224 * 270.14936 * 1 2 3 22 22 H 1.08997 * 109.47221 * 30.15030 * 1 2 3 23 23 H 1.09000 * 109.46962 * 150.14938 * 1 2 3 24 24 H 0.96691 * 117.00070 * 180.02562 * 7 5 4 25 25 H 1.08003 * 126.55929 * 180.02562 * 8 4 3 26 26 H 1.09002 * 109.47129 * 145.02486 * 10 9 8 27 27 H 1.08998 * 109.46845 * 25.03293 * 10 9 8 28 28 H 1.09002 * 109.47153 * 59.99757 * 11 10 9 29 29 H 1.09001 * 109.46832 * 299.99948 * 11 10 9 30 30 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 31 31 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 32 32 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2626 1.0597 0.0000 4 6 3.5638 0.6711 -0.0062 5 6 4.7373 1.5593 -0.0131 6 8 5.8571 1.0867 -0.0178 7 8 4.5702 2.8968 -0.0141 8 6 3.5847 -0.6938 -0.0044 9 7 2.2959 -1.1062 0.0035 10 6 1.8338 -2.4964 0.0075 11 6 1.5460 -2.9425 -1.4275 12 6 1.0629 -4.3942 -1.4231 13 6 0.7800 -4.8336 -2.8366 14 1 0.9295 -4.1462 -3.6559 15 6 0.3304 -6.1135 -3.0837 16 7 0.1489 -6.9508 -2.0859 17 14 -0.0209 -6.6580 -4.8357 18 1 1.2194 -6.5508 -5.6454 19 1 -0.4886 -8.0675 -4.8316 20 1 -1.0721 -5.7889 -5.4228 21 1 -0.3634 0.0027 1.0277 22 1 -0.3633 0.8886 -0.5161 23 1 -0.3633 -0.8913 -0.5115 24 1 5.3706 3.4392 -0.0191 25 1 4.4619 -1.3238 -0.0077 26 1 0.9235 -2.5751 0.6019 27 1 2.6053 -3.1344 0.4385 28 1 2.4563 -2.8638 -2.0219 29 1 0.7744 -2.3044 -1.8584 30 1 1.8341 -5.0325 -0.9920 31 1 0.1526 -4.4724 -0.8288 32 1 -0.1670 -7.8513 -2.2598 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600685585.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:13 Heat of formation + Delta-G solvation = -75.118945 kcal Electronic energy + Delta-G solvation = -16160.111308 eV Core-core repulsion = 13313.111032 eV Total energy + Delta-G solvation = -2847.000276 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.36714 -40.81769 -37.05928 -36.93510 -35.00770 -32.96095 -32.70922 -28.80529 -28.46138 -25.90909 -24.54939 -22.38133 -21.70098 -20.94205 -19.12192 -18.56558 -18.16858 -17.10339 -16.83565 -16.48667 -16.09728 -15.86130 -15.07634 -14.69382 -14.40977 -14.08684 -14.03774 -13.50133 -13.31960 -13.19280 -12.76786 -12.70433 -12.56517 -12.52161 -11.94863 -11.71624 -11.62721 -11.35525 -11.26516 -10.71803 -10.54993 -9.61427 -8.21420 -6.31083 0.28327 1.18566 1.41755 1.42404 1.50124 1.54433 2.21036 2.25041 2.40961 3.13324 3.32790 3.65083 3.79134 4.08171 4.14337 4.39732 4.41662 4.60974 4.69690 4.74308 4.84451 5.03692 5.08811 5.13572 5.36777 5.49929 5.51900 5.68748 5.82607 5.99050 6.23205 6.69491 6.84682 7.07994 7.38364 8.89449 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.037837 B = 0.004445 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.847700 B = 6297.971143 C = 6547.926900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.210 3.790 3 N -0.476 5.476 4 C -0.091 4.091 5 C 0.581 3.419 6 O -0.546 6.546 7 O -0.499 6.499 8 C 0.054 3.946 9 N -0.440 5.440 10 C 0.104 3.896 11 C -0.109 4.109 12 C 0.029 3.971 13 C -0.545 4.545 14 H 0.055 0.945 15 C 0.007 3.993 16 N -0.928 5.928 17 Si 0.955 3.045 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.268 1.268 21 H 0.102 0.898 22 H 0.099 0.901 23 H 0.086 0.914 24 H 0.431 0.569 25 H 0.207 0.793 26 H 0.115 0.885 27 H 0.109 0.891 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.002 0.998 31 H 0.009 0.991 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.100 13.528 5.624 14.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.054 4.054 3 N -0.196 5.196 4 C -0.218 4.218 5 C 0.427 3.573 6 O -0.438 6.438 7 O -0.312 6.312 8 C -0.088 4.088 9 N -0.120 5.120 10 C -0.016 4.016 11 C -0.147 4.147 12 C -0.009 4.009 13 C -0.583 4.583 14 H 0.073 0.927 15 C -0.191 4.191 16 N -0.568 5.568 17 Si 0.781 3.219 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.193 1.193 21 H 0.121 0.879 22 H 0.117 0.883 23 H 0.105 0.895 24 H 0.292 0.708 25 H 0.224 0.776 26 H 0.133 0.867 27 H 0.128 0.872 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.021 0.979 31 H 0.027 0.973 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.666 13.710 5.682 15.078 hybrid contribution 0.799 -1.053 -0.897 1.597 sum 3.465 12.657 4.785 13.968 Atomic orbital electron populations 1.20445 0.82006 1.05267 1.05267 1.24214 0.97367 0.80303 1.03506 1.70633 1.00693 1.28925 1.19392 1.19487 0.91187 0.91051 1.20041 1.19256 0.86186 0.81150 0.70753 1.90890 1.26038 1.77514 1.49331 1.84643 1.44033 1.17602 1.84903 1.22918 0.88958 0.95000 1.01935 1.45737 1.05714 1.09267 1.51248 1.22324 1.03268 0.76546 0.99470 1.21783 1.00791 0.98005 0.94150 1.18914 0.95515 0.90720 0.95740 1.21599 1.44509 0.97876 0.94338 0.92717 1.25815 0.95311 0.96937 1.01053 1.70036 1.47123 1.06703 1.32907 0.85644 0.78836 0.77318 0.80134 1.19679 1.20867 1.19292 0.87909 0.88262 0.89493 0.70759 0.77592 0.86656 0.87239 0.93195 0.92175 0.97942 0.97293 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.42 10.03 71.24 0.71 -0.70 16 2 C 0.21 5.74 7.89 137.96 1.09 6.83 16 3 N -0.48 -14.96 11.33 -176.83 -2.00 -16.97 16 4 C -0.09 -2.79 7.02 40.47 0.28 -2.51 16 5 C 0.58 16.65 8.33 70.17 0.58 17.24 16 6 O -0.55 -17.25 17.67 19.70 0.35 -16.90 16 7 O -0.50 -11.39 13.44 -57.02 -0.77 -12.15 16 8 C 0.05 1.48 11.25 83.75 0.94 2.43 16 9 N -0.44 -11.80 2.72 -513.63 -1.40 -13.20 16 10 C 0.10 2.71 5.64 86.38 0.49 3.20 16 11 C -0.11 -3.76 5.48 30.59 0.17 -3.60 16 12 C 0.03 1.32 4.97 29.85 0.15 1.47 16 13 C -0.55 -28.83 9.11 25.60 0.23 -28.60 16 14 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 15 C 0.01 0.40 5.46 84.66 0.46 0.86 16 16 N -0.93 -53.03 13.29 21.45 0.28 -52.74 16 17 Si 0.96 42.33 29.54 68.60 2.03 44.36 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 21 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 23 H 0.09 1.69 7.28 -2.39 -0.02 1.68 16 24 H 0.43 4.83 9.11 -74.06 -0.67 4.16 16 25 H 0.21 4.74 8.06 -2.91 -0.02 4.72 16 26 H 0.12 2.61 7.91 -2.39 -0.02 2.59 16 27 H 0.11 2.59 8.13 -2.39 -0.02 2.57 16 28 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.06 2.06 7.61 -2.39 -0.02 2.04 16 30 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -68.70 289.35 4.06 -64.64 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 0.46 Total: 6.36 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 5.11 Total: -3.38 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -3.12 Total: -82.91 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.42 Total: -29.06 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -68.70 4.06 -64.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600685585.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.484 kcal (2) G-P(sol) polarization free energy of solvation -68.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds