Wall clock time and date at job start Sun Mar 29 2020 21:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00132 * 2 1 4 4 H 1.48508 * 109.46769 * 269.99687 * 3 2 1 5 5 H 1.48499 * 109.47459 * 29.98957 * 3 2 1 6 6 H 1.48498 * 109.47357 * 150.00078 * 3 2 1 7 7 C 1.37878 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00130 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00006 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46947 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.46847 * 180.02562 * 10 9 7 12 12 C 1.46902 * 110.99741 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47117 * 179.97438 * 12 11 10 14 14 C 1.35483 * 125.50963 * 264.69226 * 13 12 11 15 15 C 1.39791 * 107.84595 * 180.26334 * 14 13 12 16 16 C 1.37992 * 106.97000 * 359.97438 * 15 14 13 17 17 C 1.46492 * 126.26545 * 179.97438 * 16 15 14 18 18 O 1.21619 * 120.00253 * 0.02767 * 17 16 15 19 19 O 1.34894 * 120.00224 * 180.02562 * 17 16 15 20 20 N 1.34964 * 125.50684 * 84.99616 * 13 12 11 21 21 H 0.97000 * 125.63446 * 359.77163 * 20 13 12 22 22 H 0.97000 * 119.99879 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.46808 * 60.00278 * 9 7 2 24 24 H 1.09002 * 109.47166 * 300.00188 * 9 7 2 25 25 H 1.08991 * 109.47358 * 59.99740 * 10 9 7 26 26 H 1.09002 * 109.46995 * 299.99869 * 10 9 7 27 27 H 1.00900 * 110.99852 * 303.94653 * 11 10 9 28 28 H 1.08997 * 109.46971 * 59.99498 * 12 11 10 29 29 H 1.09001 * 109.46882 * 299.99446 * 12 11 10 30 30 H 1.07999 * 126.07657 * 0.21844 * 14 13 12 31 31 H 1.08004 * 126.51589 * 179.97438 * 15 14 13 32 32 H 0.96695 * 117.00169 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6528 0.6998 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5106 -4.9343 0.0012 12 6 2.4351 -6.0759 0.0018 13 6 1.6470 -7.3605 0.0018 14 6 1.3220 -8.0844 1.0999 15 6 0.5974 -9.2025 0.6770 16 6 0.5004 -9.1233 -0.6972 17 6 -0.1748 -10.0823 -1.5749 18 8 -0.7200 -11.0609 -1.1013 19 8 -0.1921 -9.8800 -2.9085 20 7 1.1558 -7.9787 -1.0928 21 1 1.2492 -7.6682 -2.0069 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6239 -2.5567 0.8903 25 1 2.8711 -3.6040 0.8922 26 1 2.8725 -3.6048 -0.8877 27 1 0.8734 -4.9843 0.7819 28 1 3.0624 -6.0349 0.8922 29 1 3.0636 -6.0349 -0.8878 30 1 1.5780 -7.8412 2.1206 31 1 0.1907 -9.9804 1.3062 32 1 -0.6502 -10.5399 -3.4467 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608181258.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:44 Heat of formation + Delta-G solvation = -85.011389 kcal Electronic energy + Delta-G solvation = -15729.019242 eV Core-core repulsion = 12881.589997 eV Total energy + Delta-G solvation = -2847.429245 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.45918 -40.67146 -37.48539 -37.12925 -35.06306 -32.39859 -32.14771 -30.21026 -27.28665 -25.36899 -23.79360 -22.44922 -21.62510 -21.02032 -19.62680 -18.59186 -18.45844 -17.04140 -16.85470 -16.44378 -15.87583 -15.67244 -14.96303 -14.67694 -14.60487 -14.32344 -14.04536 -13.91086 -13.66961 -13.20251 -12.82276 -12.67190 -12.51123 -12.40707 -11.98585 -11.89813 -11.40724 -11.27542 -10.55107 -10.04784 -9.44313 -9.19121 -8.18949 -6.30297 0.14090 1.42488 1.43565 1.54297 1.56298 1.87977 2.10418 2.29201 2.42200 3.15070 3.44370 3.85477 4.11186 4.29409 4.32215 4.53904 4.57214 4.67731 4.69999 4.96972 5.10170 5.20772 5.46470 5.46531 5.68684 5.73023 5.78992 5.88089 6.10781 6.25143 6.40862 6.49103 6.87996 6.91092 7.39355 8.93118 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.049854 B = 0.003597 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.510301 B = 7781.500784 C = 7995.746052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.029 3.971 10 C 0.085 3.915 11 N -0.697 5.697 12 C 0.118 3.882 13 C 0.080 3.920 14 C -0.212 4.212 15 C -0.100 4.100 16 C -0.072 4.072 17 C 0.562 3.438 18 O -0.543 6.543 19 O -0.513 6.513 20 N -0.506 5.506 21 H 0.430 0.570 22 H 0.263 0.737 23 H -0.008 1.008 24 H -0.009 1.009 25 H 0.028 0.972 26 H 0.064 0.936 27 H 0.342 0.658 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.163 0.837 31 H 0.159 0.841 32 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.262 -17.865 -2.164 18.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.009 4.009 10 C -0.044 4.044 11 N -0.329 5.329 12 C -0.011 4.011 13 C -0.042 4.042 14 C -0.236 4.236 15 C -0.126 4.126 16 C -0.183 4.183 17 C 0.409 3.591 18 O -0.434 6.434 19 O -0.327 6.327 20 N -0.101 5.101 21 H 0.270 0.730 22 H 0.072 0.928 23 H 0.011 0.989 24 H 0.009 0.991 25 H 0.046 0.954 26 H 0.082 0.918 27 H 0.160 0.840 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.181 0.819 31 H 0.176 0.824 32 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges 4.091 -17.729 -2.704 18.395 hybrid contribution -0.054 0.648 0.080 0.655 sum 4.037 -17.081 -2.624 17.747 Atomic orbital electron populations 1.70111 1.07884 1.27753 1.51576 1.25980 0.95725 1.03423 0.94733 0.85431 0.78693 0.78366 0.78443 1.19871 1.20976 1.18500 1.21639 0.93670 0.92164 1.50658 0.91810 1.18942 0.94436 0.92442 0.95049 1.21796 0.95521 0.87597 0.99478 1.60544 1.20075 1.01494 1.50772 1.20574 0.92689 0.84314 1.03481 1.20572 1.00846 0.96113 0.86622 1.21003 1.06543 0.96904 0.99161 1.21563 1.00013 0.99684 0.91348 1.19361 1.11975 0.93253 0.93674 1.19456 0.75987 0.82702 0.80942 1.90931 1.45135 1.30360 1.76994 1.84556 1.73585 1.56201 1.18399 1.41800 1.40345 1.17927 1.10078 0.73025 0.92825 0.98911 0.99058 0.95366 0.91758 0.83970 0.90896 0.89128 0.81911 0.82373 0.70135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.50 13.29 21.45 0.28 -56.21 16 2 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 3 Si 0.97 43.43 29.54 68.60 2.03 45.46 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 7 C -0.54 -30.12 9.11 25.60 0.23 -29.89 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.48 5.23 29.85 0.16 1.64 16 10 C 0.08 3.24 5.62 86.30 0.49 3.73 16 11 N -0.70 -22.04 6.49 -517.93 -3.36 -25.40 16 12 C 0.12 2.75 6.21 85.56 0.53 3.28 16 13 C 0.08 1.80 6.62 41.44 0.27 2.08 16 14 C -0.21 -4.60 10.71 22.01 0.24 -4.36 16 15 C -0.10 -2.28 10.66 22.59 0.24 -2.04 16 16 C -0.07 -1.69 7.10 40.32 0.29 -1.40 16 17 C 0.56 12.86 8.30 69.97 0.58 13.44 16 18 O -0.54 -15.19 17.67 19.45 0.34 -14.84 16 19 O -0.51 -8.20 13.44 -58.09 -0.78 -8.98 16 20 N -0.51 -11.05 6.07 -172.33 -1.05 -12.09 16 21 H 0.43 8.10 8.96 -92.71 -0.83 7.27 16 22 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 23 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 24 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 25 H 0.03 1.03 8.14 -2.39 -0.02 1.02 16 26 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.34 10.94 8.72 -89.69 -0.78 10.16 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 31 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 32 H 0.44 2.80 9.11 -74.06 -0.67 2.12 16 Total: -1.00 -69.49 290.67 -0.17 -69.66 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -1.12 Total: 15.53 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: 3.49 Total: -13.11 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -4.12 Total: -93.70 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.44 Total: -23.83 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -69.49 -0.17 -69.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181258.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.354 kcal (2) G-P(sol) polarization free energy of solvation -69.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds