Wall clock time and date at job start Sun Mar 29 2020 22:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34618 * 126.10980 * 2 1 4 4 C 1.30952 * 108.62324 * 179.82839 * 3 2 1 5 5 N 1.38643 * 125.70221 * 180.16422 * 4 3 2 6 6 C 1.34777 * 120.00171 * 0.31664 * 5 4 3 7 7 O 1.21279 * 119.99471 * 0.02562 * 6 5 4 8 8 C 1.50692 * 120.00551 * 179.97438 * 6 5 4 9 9 C 1.53003 * 109.47645 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47422 * 180.02562 * 9 8 6 11 11 H 1.07994 * 120.00051 * 359.97438 * 10 9 8 12 12 C 1.37873 * 119.99644 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00413 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99935 * 179.97438 * 12 10 9 15 15 H 1.48510 * 109.46719 * 0.02562 * 14 12 10 16 16 H 1.48493 * 109.47066 * 119.99825 * 14 12 10 17 17 H 1.48502 * 109.47084 * 240.00433 * 14 12 10 18 18 O 1.34198 * 108.59902 * 0.44085 * 4 3 2 19 19 C 1.34179 * 126.10945 * 180.31691 * 2 1 3 20 20 C 1.50706 * 126.37461 * 0.02562 * 19 2 1 21 21 H 1.09001 * 109.46953 * 269.68676 * 1 2 3 22 22 H 1.09000 * 109.47318 * 29.68274 * 1 2 3 23 23 H 1.09000 * 109.47161 * 149.68904 * 1 2 3 24 24 H 0.97005 * 120.00799 * 180.32099 * 5 4 3 25 25 H 1.09001 * 109.47521 * 300.00727 * 8 6 5 26 26 H 1.09001 * 109.47185 * 60.00607 * 8 6 5 27 27 H 1.09009 * 109.46752 * 300.00398 * 9 8 6 28 28 H 1.09001 * 109.46689 * 59.99868 * 9 8 6 29 29 H 0.97005 * 120.00343 * 180.02562 * 13 12 10 30 30 H 1.08997 * 109.46482 * 90.00376 * 20 19 2 31 31 H 1.08997 * 109.47497 * 210.00422 * 20 19 2 32 32 H 1.09000 * 109.47038 * 330.00839 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3004 1.0876 0.0000 4 6 3.5494 0.6941 0.0037 5 7 4.6594 1.5248 0.0082 6 6 4.4996 2.8631 0.0154 7 8 3.3847 3.3405 0.0185 8 6 5.7060 3.7660 0.0208 9 6 5.2500 5.2265 0.0292 10 6 6.4565 6.1295 0.0340 11 1 7.4492 5.7043 0.0317 12 6 6.2928 7.4985 0.0413 13 7 5.0840 8.0163 0.0445 14 14 7.7883 8.6179 0.0479 15 1 9.0236 7.7936 0.0434 16 1 7.7656 9.4814 -1.1599 17 1 7.7646 9.4684 1.2651 18 8 3.5755 -0.6476 -0.0036 19 6 2.2978 -1.0840 -0.0060 20 6 1.8442 -2.5212 -0.0145 21 1 -0.3633 -0.0056 1.0277 22 1 -0.3634 0.8928 -0.5089 23 1 -0.3633 -0.8872 -0.5187 24 1 5.5511 1.1430 0.0060 25 1 6.3045 3.5675 0.9099 26 1 6.3051 3.5773 -0.8700 27 1 4.6512 5.4253 -0.8598 28 1 4.6511 5.4150 0.9202 29 1 4.9688 8.9794 0.0493 30 1 1.7354 -2.8616 -1.0442 31 1 2.5833 -3.1385 0.4961 32 1 0.8859 -2.6027 0.4984 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001633291559.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:07 Heat of formation + Delta-G solvation = -16.479405 kcal Electronic energy + Delta-G solvation = -16202.556427 eV Core-core repulsion = 13358.098952 eV Total energy + Delta-G solvation = -2844.457475 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.21933 -39.44253 -35.13764 -34.88467 -33.54349 -32.32706 -30.99291 -29.16458 -26.52905 -25.01737 -22.90391 -21.43175 -20.94781 -19.57794 -17.88326 -16.98590 -16.92707 -15.78765 -15.53042 -14.99478 -14.46447 -14.01077 -13.59651 -13.46563 -13.27672 -13.19106 -12.59531 -12.48278 -12.24570 -12.06485 -11.26295 -11.16114 -10.95950 -10.62118 -10.20031 -10.19734 -10.04825 -9.72180 -9.35636 -9.13579 -8.36585 -7.95961 -5.99554 -4.04769 1.46863 1.94141 2.66033 3.29091 3.31408 3.38465 3.41354 3.47177 4.42967 4.58842 4.77283 4.89646 5.13523 5.21749 5.28251 5.35732 5.51329 5.56627 5.70965 5.77967 6.03197 6.06481 6.08415 6.27823 6.61062 6.72574 7.18261 7.69426 7.77410 8.00872 8.06165 8.30140 8.49514 9.03046 9.59272 11.11312 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.066852 B = 0.004186 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.735296 B = 6688.035974 C = 7075.719362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.007 3.993 3 N -0.465 5.465 4 C 0.423 3.577 5 N -0.629 5.629 6 C 0.507 3.493 7 O -0.459 6.459 8 C -0.118 4.118 9 C 0.034 3.966 10 C -0.529 4.529 11 H 0.058 0.942 12 C 0.059 3.941 13 N -0.888 5.888 14 Si 0.894 3.106 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 O -0.220 6.220 19 C -0.085 4.085 20 C -0.056 4.056 21 H 0.074 0.926 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.420 0.580 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.261 0.739 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.771 -20.565 -0.093 20.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.113 4.113 3 N -0.202 5.202 4 C 0.126 3.874 5 N -0.289 5.289 6 C 0.295 3.705 7 O -0.324 6.324 8 C -0.158 4.158 9 C -0.003 4.003 10 C -0.567 4.567 11 H 0.076 0.924 12 C -0.144 4.144 13 N -0.526 5.526 14 Si 0.722 3.278 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 O -0.108 6.108 19 C -0.138 4.138 20 C -0.112 4.112 21 H 0.093 0.907 22 H 0.097 0.903 23 H 0.091 0.909 24 H 0.258 0.742 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.832 -19.337 -0.092 19.932 hybrid contribution 1.647 -0.284 0.003 1.672 sum -3.185 -19.621 -0.089 19.878 Atomic orbital electron populations 1.20105 0.86576 1.03258 1.02782 1.21575 0.98001 0.87494 1.04198 1.71141 0.97844 1.28868 1.22373 1.21830 0.89030 0.77410 0.99123 1.43357 1.05305 1.05462 1.74733 1.22180 0.93837 0.79245 0.75241 1.90829 1.26317 1.72860 1.42379 1.21951 0.92973 0.97562 1.03352 1.18985 0.96805 0.85468 0.99055 1.21193 0.92569 0.91174 1.51765 0.92370 1.25024 0.95808 0.98333 0.95186 1.70004 1.20869 1.11822 1.49896 0.86512 0.82927 0.80759 0.77616 1.19712 1.20994 1.20988 1.84301 1.31217 1.21943 1.73369 1.22771 0.79624 0.97941 1.13422 1.20137 1.01511 0.86355 1.03238 0.90733 0.90327 0.90906 0.74247 0.89349 0.89350 0.95477 0.95474 0.92900 0.90361 0.90759 0.89259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.04 36.01 0.36 -0.40 16 2 C 0.01 0.11 7.10 -82.80 -0.59 -0.48 16 3 N -0.47 -8.97 9.47 -10.57 -0.10 -9.07 16 4 C 0.42 7.27 8.98 -86.61 -0.78 6.50 16 5 N -0.63 -9.78 5.39 -13.06 -0.07 -9.85 16 6 C 0.51 9.92 7.79 -10.99 -0.09 9.83 16 7 O -0.46 -11.23 14.65 5.56 0.08 -11.15 16 8 C -0.12 -2.28 5.64 -27.89 -0.16 -2.44 16 9 C 0.03 0.90 4.26 -27.88 -0.12 0.79 16 10 C -0.53 -14.66 9.11 -34.44 -0.31 -14.97 16 11 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -27.12 13.29 55.43 0.74 -26.39 16 14 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 15 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 O -0.22 -3.25 10.80 4.00 0.04 -3.21 16 19 C -0.08 -1.09 7.38 -35.74 -0.26 -1.36 16 20 C -0.06 -0.42 10.03 36.01 0.36 -0.05 16 21 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.07 0.56 7.77 -51.93 -0.40 0.15 16 24 H 0.42 4.59 8.82 -40.82 -0.36 4.23 16 25 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 26 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 27 H 0.03 0.78 8.10 -51.92 -0.42 0.36 16 28 H 0.03 0.78 8.10 -51.93 -0.42 0.36 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.50 7.77 -51.93 -0.40 0.09 16 LS Contribution 285.70 15.07 4.31 4.31 Total: -1.00 -36.26 285.70 -5.79 -42.05 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -4.09 Total: -2.05 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -1.68 Total: -1.00 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.57 Total: -45.32 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.12 Total: -14.35 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -36.26 -5.79 -42.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633291559.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.569 kcal (2) G-P(sol) polarization free energy of solvation -36.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds