Wall clock time and date at job start Sun Mar 29 2020 22:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34618 * 126.10980 * 2 1 4 4 C 1.30952 * 108.62324 * 179.82839 * 3 2 1 5 5 N 1.38643 * 125.70221 * 180.16422 * 4 3 2 6 6 C 1.34777 * 120.00171 * 0.31664 * 5 4 3 7 7 O 1.21279 * 119.99471 * 0.02562 * 6 5 4 8 8 C 1.50692 * 120.00551 * 179.97438 * 6 5 4 9 9 C 1.53003 * 109.47645 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47422 * 180.02562 * 9 8 6 11 11 H 1.07994 * 120.00051 * 359.97438 * 10 9 8 12 12 C 1.37873 * 119.99644 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00413 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99935 * 179.97438 * 12 10 9 15 15 H 1.48510 * 109.46719 * 0.02562 * 14 12 10 16 16 H 1.48493 * 109.47066 * 119.99825 * 14 12 10 17 17 H 1.48502 * 109.47084 * 240.00433 * 14 12 10 18 18 O 1.34198 * 108.59902 * 0.44085 * 4 3 2 19 19 C 1.34179 * 126.10945 * 180.31691 * 2 1 3 20 20 C 1.50706 * 126.37461 * 0.02562 * 19 2 1 21 21 H 1.09001 * 109.46953 * 269.68676 * 1 2 3 22 22 H 1.09000 * 109.47318 * 29.68274 * 1 2 3 23 23 H 1.09000 * 109.47161 * 149.68904 * 1 2 3 24 24 H 0.97005 * 120.00799 * 180.32099 * 5 4 3 25 25 H 1.09001 * 109.47521 * 300.00727 * 8 6 5 26 26 H 1.09001 * 109.47185 * 60.00607 * 8 6 5 27 27 H 1.09009 * 109.46752 * 300.00398 * 9 8 6 28 28 H 1.09001 * 109.46689 * 59.99868 * 9 8 6 29 29 H 0.97005 * 120.00343 * 180.02562 * 13 12 10 30 30 H 1.08997 * 109.46482 * 90.00376 * 20 19 2 31 31 H 1.08997 * 109.47497 * 210.00422 * 20 19 2 32 32 H 1.09000 * 109.47038 * 330.00839 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3004 1.0876 0.0000 4 6 3.5494 0.6941 0.0037 5 7 4.6594 1.5248 0.0082 6 6 4.4996 2.8631 0.0154 7 8 3.3847 3.3405 0.0185 8 6 5.7060 3.7660 0.0208 9 6 5.2500 5.2265 0.0292 10 6 6.4565 6.1295 0.0340 11 1 7.4492 5.7043 0.0317 12 6 6.2928 7.4985 0.0413 13 7 5.0840 8.0163 0.0445 14 14 7.7883 8.6179 0.0479 15 1 9.0236 7.7936 0.0434 16 1 7.7656 9.4814 -1.1599 17 1 7.7646 9.4684 1.2651 18 8 3.5755 -0.6476 -0.0036 19 6 2.2978 -1.0840 -0.0060 20 6 1.8442 -2.5212 -0.0145 21 1 -0.3633 -0.0056 1.0277 22 1 -0.3634 0.8928 -0.5089 23 1 -0.3633 -0.8872 -0.5187 24 1 5.5511 1.1430 0.0060 25 1 6.3045 3.5675 0.9099 26 1 6.3051 3.5773 -0.8700 27 1 4.6512 5.4253 -0.8598 28 1 4.6511 5.4150 0.9202 29 1 4.9688 8.9794 0.0493 30 1 1.7354 -2.8616 -1.0442 31 1 2.5833 -3.1385 0.4961 32 1 0.8859 -2.6027 0.4984 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001633291559.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:07 Heat of formation + Delta-G solvation = -44.557887 kcal Electronic energy + Delta-G solvation = -16203.774001 eV Core-core repulsion = 13358.098952 eV Total energy + Delta-G solvation = -2845.675049 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.38480 -40.98956 -36.36437 -36.23883 -35.57563 -33.51488 -32.78907 -30.01410 -28.27988 -26.35108 -24.40078 -23.01202 -22.17604 -21.06896 -19.14933 -18.82042 -18.18083 -17.53885 -16.69823 -16.55215 -16.44829 -15.22990 -14.93186 -14.52659 -14.27498 -14.19949 -14.17583 -13.78946 -13.29289 -13.12793 -13.00350 -12.86219 -12.47194 -12.44866 -11.95217 -11.68577 -11.48128 -11.44865 -11.25544 -10.93212 -10.56948 -9.09485 -8.17329 -6.31354 0.29842 0.69817 1.35319 1.44628 1.45611 1.58878 1.90757 2.37918 2.45830 3.16625 3.35545 3.78747 3.89382 4.12758 4.36272 4.43869 4.51036 4.70056 4.71235 4.76938 4.81584 5.01209 5.02509 5.10966 5.29951 5.44627 5.51691 5.60185 5.84844 5.94355 6.15577 6.79064 6.87678 7.10306 7.39184 8.95647 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.066852 B = 0.004186 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.735296 B = 6688.035974 C = 7075.719362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.032 4.032 3 N -0.515 5.515 4 C 0.397 3.603 5 N -0.607 5.607 6 C 0.515 3.485 7 O -0.520 6.520 8 C -0.103 4.103 9 C 0.038 3.962 10 C -0.539 4.539 11 H 0.082 0.918 12 C -0.008 4.008 13 N -0.938 5.938 14 Si 0.975 3.025 15 H -0.250 1.250 16 H -0.283 1.283 17 H -0.283 1.283 18 O -0.214 6.214 19 C -0.063 4.063 20 C -0.056 4.056 21 H 0.084 0.916 22 H 0.058 0.942 23 H 0.110 0.890 24 H 0.443 0.557 25 H 0.121 0.879 26 H 0.121 0.879 27 H -0.015 1.015 28 H -0.015 1.015 29 H 0.262 0.738 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.028 -23.111 -0.107 23.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.151 4.151 3 N -0.253 5.253 4 C 0.100 3.900 5 N -0.268 5.268 6 C 0.304 3.696 7 O -0.390 6.390 8 C -0.143 4.143 9 C 0.000 4.000 10 C -0.577 4.577 11 H 0.100 0.900 12 C -0.205 4.205 13 N -0.578 5.578 14 Si 0.799 3.201 15 H -0.173 1.173 16 H -0.209 1.209 17 H -0.208 1.208 18 O -0.102 6.102 19 C -0.115 4.115 20 C -0.112 4.112 21 H 0.103 0.897 22 H 0.077 0.923 23 H 0.129 0.871 24 H 0.285 0.715 25 H 0.139 0.861 26 H 0.139 0.861 27 H 0.003 0.997 28 H 0.003 0.997 29 H 0.071 0.929 30 H 0.118 0.882 31 H 0.107 0.893 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.038 -21.968 -0.107 22.177 hybrid contribution 1.005 0.356 0.005 1.066 sum -2.032 -21.611 -0.103 21.707 Atomic orbital electron populations 1.20227 0.84270 1.04117 1.03721 1.22227 0.99716 0.87134 1.06056 1.71054 0.99538 1.31807 1.22934 1.21739 0.88839 0.78428 1.00983 1.42738 1.06273 1.04215 1.73583 1.22063 0.92866 0.80447 0.74219 1.90815 1.28350 1.74360 1.45503 1.21703 0.93113 0.93011 1.06453 1.18770 0.95704 0.90410 0.95126 1.21712 0.93725 0.91671 1.50623 0.89991 1.26142 0.99136 1.00570 0.94701 1.70189 1.23899 1.12234 1.51522 0.85258 0.79197 0.78302 0.77378 1.17315 1.20855 1.20848 1.84325 1.32321 1.20544 1.73004 1.23891 0.78420 0.99839 1.09394 1.20494 1.02935 0.82578 1.05184 0.89744 0.92291 0.87147 0.71549 0.86078 0.86081 0.99666 0.99657 0.92906 0.88202 0.89250 0.86716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.38 10.04 71.24 0.71 -0.67 16 2 C -0.03 -0.95 7.10 41.21 0.29 -0.65 16 3 N -0.52 -20.41 9.47 -301.68 -2.86 -23.27 16 4 C 0.40 13.63 8.98 178.95 1.61 15.24 16 5 N -0.61 -18.56 5.39 -423.81 -2.28 -20.84 16 6 C 0.51 20.50 7.79 87.65 0.68 21.18 16 7 O -0.52 -26.96 14.65 -3.03 -0.04 -27.01 16 8 C -0.10 -3.91 5.64 29.85 0.17 -3.74 16 9 C 0.04 2.05 4.26 29.85 0.13 2.18 16 10 C -0.54 -29.90 9.11 25.60 0.23 -29.67 16 11 H 0.08 4.06 7.74 -2.91 -0.02 4.04 16 12 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 13 N -0.94 -59.41 13.29 21.44 0.28 -59.13 16 14 Si 0.97 43.81 29.54 68.60 2.03 45.84 16 15 H -0.25 -10.23 7.11 99.48 0.71 -9.53 16 16 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 O -0.21 -6.01 10.80 -8.61 -0.09 -6.10 16 19 C -0.06 -1.49 7.38 24.76 0.18 -1.30 16 20 C -0.06 -0.60 10.03 71.24 0.71 0.11 16 21 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.11 1.37 7.77 -2.39 -0.02 1.35 16 24 H 0.44 8.81 8.82 -92.70 -0.82 8.00 16 25 H 0.12 3.82 8.14 -2.39 -0.02 3.80 16 26 H 0.12 3.82 8.14 -2.39 -0.02 3.80 16 27 H -0.02 -0.94 8.10 -2.38 -0.02 -0.96 16 28 H -0.02 -0.93 8.10 -2.39 -0.02 -0.95 16 29 H 0.26 15.55 8.31 -92.70 -0.77 14.78 16 30 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.11 0.73 7.77 -2.39 -0.02 0.71 16 Total: -1.00 -84.57 285.70 2.54 -82.03 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: 0.32 Total: 5.80 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 5.19 Total: 2.68 kcal Atomic # 7 Polarization: -98.38 SS G_CDS: -4.86 Total: -103.24 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -0.14 Total: -33.11 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -84.57 2.54 -82.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633291559.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.472 kcal (2) G-P(sol) polarization free energy of solvation -84.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds