Wall clock time and date at job start Sun Mar 29 2020 22:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86800 * 120.00143 * 2 1 4 4 H 1.48490 * 109.47168 * 270.00184 * 3 2 1 5 5 H 1.48502 * 109.46721 * 30.00295 * 3 2 1 6 6 H 1.48501 * 109.46726 * 150.00012 * 3 2 1 7 7 C 1.39947 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99621 * 197.85517 * 7 2 1 9 9 C 1.41394 * 119.99918 * 17.85498 * 7 2 1 10 10 C 1.40717 * 120.24724 * 24.38960 * 9 7 2 11 11 C 1.37618 * 119.74424 * 180.02562 * 10 9 7 12 12 C 1.38630 * 120.25104 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.75152 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.46626 * 90.00640 * 13 12 11 15 15 C 1.38241 * 120.00184 * 269.72933 * 14 13 12 16 16 C 1.38229 * 120.00171 * 179.76498 * 15 14 13 17 17 C 1.38241 * 119.99834 * 0.48917 * 16 15 14 18 18 C 1.38233 * 119.99891 * 359.78091 * 17 16 15 19 19 C 1.38234 * 120.00304 * 359.96976 * 18 17 16 20 20 C 1.38642 * 120.49917 * 0.25987 * 12 11 10 21 21 C 1.37615 * 120.24847 * 359.43737 * 20 12 11 22 22 H 0.97001 * 119.99727 * 359.97438 * 1 2 3 23 23 H 1.08000 * 120.12259 * 359.97438 * 10 9 7 24 24 H 1.08004 * 119.87167 * 180.02562 * 11 10 9 25 25 H 1.08994 * 109.47307 * 210.00558 * 13 12 11 26 26 H 1.09003 * 109.46914 * 330.01163 * 13 12 11 27 27 H 1.08000 * 119.99784 * 0.02562 * 15 14 13 28 28 H 1.07996 * 120.00427 * 180.24892 * 16 15 14 29 29 H 1.08003 * 119.99893 * 179.76706 * 17 16 15 30 30 H 1.08006 * 119.99528 * 179.97438 * 18 17 16 31 31 H 1.07994 * 120.00234 * 179.97438 * 19 18 17 32 32 H 1.08002 * 119.87383 * 179.69755 * 20 12 11 33 33 H 1.07992 * 120.12815 * 180.27482 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4398 2.6526 0.7001 6 1 3.5399 1.4400 0.7001 7 6 2.0080 -1.2120 -0.0005 8 1 3.0489 -1.2346 0.2862 9 6 1.3520 -2.4068 -0.3765 10 6 0.2208 -2.3616 -1.2122 11 6 -0.4100 -3.5309 -1.5713 12 6 0.0647 -4.7499 -1.1125 13 6 -0.6350 -6.0233 -1.5123 14 6 -0.0287 -6.5506 -2.7872 15 6 -0.5440 -6.1625 -4.0098 16 6 0.0152 -6.6424 -5.1793 17 6 1.0834 -7.5183 -5.1261 18 6 1.5951 -7.9107 -3.9034 19 6 1.0392 -7.4268 -2.7340 20 6 1.1749 -4.8059 -0.2839 21 6 1.8252 -3.6499 0.0829 22 1 -0.4850 0.8401 0.0004 23 1 -0.1514 -1.4129 -1.5698 24 1 -1.2781 -3.4986 -2.2130 25 1 -0.5202 -6.7646 -0.7216 26 1 -1.6945 -5.8215 -1.6701 27 1 -1.3809 -5.4811 -4.0514 28 1 -0.3848 -6.3361 -6.1346 29 1 1.5179 -7.8961 -6.0398 30 1 2.4294 -8.5953 -3.8619 31 1 1.4387 -7.7337 -1.7787 32 1 1.5332 -5.7607 0.0716 33 1 2.6924 -3.6961 0.7249 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002528067.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:58 Heat of formation + Delta-G solvation = 13.589673 kcal Electronic energy + Delta-G solvation = -15458.568280 eV Core-core repulsion = 13026.263961 eV Total energy + Delta-G solvation = -2432.304319 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.29323 -39.15360 -35.91471 -33.98557 -31.71918 -31.36079 -31.02551 -28.40977 -25.68273 -23.51078 -22.72933 -22.52624 -21.33657 -19.21810 -17.56913 -17.17775 -16.18201 -16.01833 -15.90791 -15.59115 -15.16259 -14.43986 -14.19398 -14.13990 -13.80278 -13.60262 -13.27225 -13.03048 -12.80005 -12.66625 -12.31811 -12.21513 -11.81480 -11.72522 -11.45231 -11.24493 -10.98535 -9.72847 -9.51359 -9.34545 -9.14307 -8.63191 -6.32346 0.54770 0.59463 0.99368 1.15237 1.36873 1.50202 1.52292 2.20430 2.71578 3.00186 3.71989 4.03855 4.15909 4.25692 4.36666 4.40075 4.44097 4.58869 4.65460 4.74734 4.88296 5.00390 5.06016 5.16004 5.23650 5.25858 5.39173 5.48261 5.66796 5.69000 5.71236 5.85304 5.99098 6.10988 6.23612 6.27135 6.40245 6.71335 6.94928 7.04970 8.33770 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.037991 B = 0.005267 C = 0.005191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.848849 B = 5314.393527 C = 5392.180489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.035 3.965 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.505 4.505 8 H 0.072 0.928 9 C 0.074 3.926 10 C -0.190 4.190 11 C -0.100 4.100 12 C -0.191 4.191 13 C -0.018 4.018 14 C -0.077 4.077 15 C -0.136 4.136 16 C -0.127 4.127 17 C -0.138 4.138 18 C -0.126 4.126 19 C -0.133 4.133 20 C -0.087 4.087 21 C -0.243 4.243 22 H 0.287 0.713 23 H 0.099 0.901 24 H 0.104 0.896 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.120 0.880 28 H 0.138 0.862 29 H 0.144 0.856 30 H 0.141 0.859 31 H 0.125 0.875 32 H 0.117 0.883 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.118 -9.967 -7.027 12.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.179 4.179 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.182 1.182 7 C -0.534 4.534 8 H 0.091 0.909 9 C 0.072 3.928 10 C -0.209 4.209 11 C -0.118 4.118 12 C -0.192 4.192 13 C -0.055 4.055 14 C -0.077 4.077 15 C -0.154 4.154 16 C -0.145 4.145 17 C -0.156 4.156 18 C -0.144 4.144 19 C -0.151 4.151 20 C -0.105 4.105 21 C -0.262 4.262 22 H 0.098 0.902 23 H 0.117 0.883 24 H 0.122 0.878 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.138 0.862 28 H 0.156 0.844 29 H 0.161 0.839 30 H 0.159 0.841 31 H 0.143 0.857 32 H 0.135 0.865 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.332 -9.819 -6.999 12.063 hybrid contribution 0.255 1.062 0.261 1.123 sum -0.077 -8.758 -6.738 11.050 Atomic orbital electron populations 1.69885 1.08999 1.30451 1.36024 1.26750 0.95494 1.04471 0.91221 0.85210 0.79088 0.75948 0.79488 1.18754 1.19079 1.18246 1.19826 0.98289 0.92717 1.42578 0.90933 1.17982 0.92114 0.93126 0.89546 1.21276 1.00236 0.97095 1.02311 1.20778 0.98915 0.92600 0.99536 1.19321 1.00437 0.93724 1.05767 1.19308 0.98146 0.93829 0.94192 1.20078 0.96464 0.95992 0.95140 1.21234 1.01161 1.00400 0.92588 1.21407 0.96973 0.97731 0.98417 1.21430 0.97050 0.98526 0.98575 1.21427 1.00232 1.00363 0.92373 1.21247 0.96360 0.98171 0.99318 1.20700 0.95361 0.96826 0.97652 1.21173 1.04278 0.93347 1.07450 0.90200 0.88330 0.87757 0.90243 0.90847 0.86238 0.84374 0.83855 0.84095 0.85672 0.86531 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.51 10.95 21.83 0.24 -44.27 16 2 C 0.04 1.82 5.14 85.26 0.44 2.26 16 3 Si 0.98 39.25 29.60 68.60 2.03 41.28 16 4 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 5 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 6 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 7 C -0.50 -28.26 9.05 23.46 0.21 -28.04 16 8 H 0.07 3.94 7.91 -2.91 -0.02 3.91 16 9 C 0.07 4.18 5.58 -21.29 -0.12 4.06 16 10 C -0.19 -10.33 8.70 22.73 0.20 -10.13 16 11 C -0.10 -4.71 9.67 22.22 0.21 -4.50 16 12 C -0.19 -8.14 5.14 -19.67 -0.10 -8.24 16 13 C -0.02 -0.58 5.47 29.10 0.16 -0.43 16 14 C -0.08 -2.42 5.12 -19.86 -0.10 -2.52 16 15 C -0.14 -4.03 9.70 22.27 0.22 -3.82 16 16 C -0.13 -3.24 10.05 22.27 0.22 -3.02 16 17 C -0.14 -3.23 10.05 22.27 0.22 -3.01 16 18 C -0.13 -3.11 10.05 22.27 0.22 -2.88 16 19 C -0.13 -3.81 9.70 22.27 0.22 -3.59 16 20 C -0.09 -3.87 9.67 22.22 0.21 -3.65 16 21 C -0.24 -12.34 9.80 22.73 0.22 -12.12 16 22 H 0.29 13.93 8.30 -92.71 -0.77 13.16 16 23 H 0.10 5.62 6.15 -2.91 -0.02 5.60 16 24 H 0.10 4.39 8.06 -2.91 -0.02 4.37 16 25 H 0.08 2.36 8.02 -2.39 -0.02 2.34 16 26 H 0.07 2.28 8.02 -2.39 -0.02 2.26 16 27 H 0.12 3.38 8.06 -2.91 -0.02 3.35 16 28 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 29 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 30 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 31 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 32 H 0.12 4.36 8.06 -2.91 -0.02 4.33 16 33 H 0.09 4.57 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -61.62 287.60 5.80 -55.82 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: 1.08 Total: 26.79 kcal Atomic # 6 Polarization: -82.07 SS G_CDS: 2.44 Total: -79.63 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 0.24 Total: -44.27 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 2.03 Total: 41.28 kcal Total: -61.62 5.80 -55.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002528067.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.413 kcal (2) G-P(sol) polarization free energy of solvation -61.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds