Wall clock time and date at job start Sun Mar 29 2020 22:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46987 * 2 1 4 4 C 1.50693 * 109.47512 * 239.99374 * 2 1 3 5 5 O 1.21282 * 120.00041 * 275.05400 * 4 2 1 6 6 N 1.34777 * 119.99912 * 95.05009 * 4 2 1 7 7 C 1.46499 * 119.99898 * 184.10598 * 6 4 2 8 8 C 1.46500 * 120.00021 * 4.10601 * 6 4 2 9 9 C 1.50695 * 109.47117 * 274.57852 * 8 6 4 10 10 H 1.07996 * 120.00137 * 0.02562 * 9 8 6 11 11 C 1.37879 * 119.99818 * 179.97438 * 9 8 6 12 12 N 1.31515 * 119.99925 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00089 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47193 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.46874 * 120.00060 * 13 11 9 16 16 H 1.48497 * 109.47237 * 240.00156 * 13 11 9 17 17 N 1.46504 * 109.46773 * 119.99271 * 2 1 3 18 18 C 1.34431 * 126.82141 * 34.71178 * 17 2 1 19 19 N 1.30835 * 108.07564 * 179.89114 * 18 17 2 20 20 C 1.33242 * 109.82690 * 0.37949 * 19 18 17 21 21 N 1.30714 * 108.95120 * 359.76606 * 20 19 18 22 22 H 1.09002 * 109.46809 * 65.90574 * 1 2 3 23 23 H 1.08993 * 109.47416 * 185.90554 * 1 2 3 24 24 H 1.08997 * 109.47362 * 305.91100 * 1 2 3 25 25 H 1.09008 * 109.47522 * 93.22663 * 7 6 4 26 26 H 1.08997 * 109.47214 * 333.22843 * 7 6 4 27 27 H 1.08998 * 109.47346 * 213.22593 * 7 6 4 28 28 H 1.09001 * 109.46764 * 34.58655 * 8 6 4 29 29 H 1.09001 * 109.46721 * 154.57977 * 8 6 4 30 30 H 0.97001 * 120.00260 * 179.97438 * 12 11 9 31 31 H 1.08000 * 125.95976 * 0.03947 * 18 17 2 32 32 H 1.08005 * 125.52746 * 179.80044 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.1474 -1.9179 -1.2289 6 7 2.3539 -0.0042 -2.3322 7 6 2.7562 -0.7004 -3.5569 8 6 2.3011 1.4596 -2.3054 9 6 0.8977 1.9172 -2.6086 10 1 0.1226 1.1905 -2.8016 11 6 0.6031 3.2639 -2.6386 12 7 1.5470 4.1489 -2.4031 13 14 -1.1366 3.8312 -3.0138 14 1 -2.0052 2.6482 -3.2397 15 1 -1.6592 4.6166 -1.8669 16 1 -1.1285 4.6799 -4.2323 17 7 2.0183 -0.6905 1.1963 18 6 1.4527 -1.7483 1.8032 19 7 2.1928 -2.0688 2.8335 20 6 3.2300 -1.2370 2.9210 21 7 3.1669 -0.3750 1.9404 22 1 -0.3633 0.4195 -0.9382 23 1 -0.3634 -1.0221 0.1057 24 1 -0.3634 0.6027 0.8323 25 1 1.8835 -0.8519 -4.1922 26 1 3.1905 -1.6664 -3.2997 27 1 3.4940 -0.1007 -4.0901 28 1 2.5941 1.8156 -1.3177 29 1 2.9841 1.8615 -3.0538 30 1 1.3399 5.0963 -2.4246 31 1 0.5470 -2.2481 1.4929 32 1 3.9987 -1.2700 3.6790 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071861512.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:04 Heat of formation + Delta-G solvation = 42.126966 kcal Electronic energy + Delta-G solvation = -17286.850063 eV Core-core repulsion = 14477.226702 eV Total energy + Delta-G solvation = -2809.623361 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -43.11349 -40.92203 -36.91656 -35.96767 -34.55135 -32.36768 -31.11783 -29.66557 -28.06129 -25.66937 -25.01928 -22.99777 -22.65096 -20.34789 -18.66539 -18.40534 -18.26243 -17.01137 -16.49401 -16.31968 -15.87200 -15.71682 -15.16824 -14.68840 -14.45666 -13.99106 -13.65609 -13.46902 -13.40891 -13.26500 -13.13729 -12.76044 -12.67999 -12.31127 -11.98951 -11.68134 -11.48389 -11.05094 -10.79937 -10.66825 -10.40002 -9.61456 -8.21670 -6.36709 0.62443 1.07830 1.43649 1.47556 1.55794 1.59752 2.00070 2.25700 2.43002 3.10482 3.40543 3.45461 3.52692 3.89964 3.99990 4.32290 4.40317 4.60094 4.62248 4.67713 4.79401 4.85398 5.08474 5.14628 5.22684 5.49866 5.57153 5.72792 5.82549 5.98866 6.35644 6.74746 7.03190 7.10250 7.35981 8.85069 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.027345 B = 0.007758 C = 0.006994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.713635 B = 3608.132113 C = 4002.682113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.146 3.854 3 H 0.116 0.884 4 C 0.507 3.493 5 O -0.583 6.583 6 N -0.595 5.595 7 C 0.088 3.912 8 C 0.244 3.756 9 C -0.541 4.541 10 H 0.068 0.932 11 C 0.024 3.976 12 N -0.921 5.921 13 Si 0.955 3.045 14 H -0.260 1.260 15 H -0.280 1.280 16 H -0.285 1.285 17 N -0.369 5.369 18 C 0.274 3.726 19 N -0.570 5.570 20 C 0.196 3.804 21 N -0.361 5.361 22 H 0.095 0.905 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.023 0.977 29 H 0.028 0.972 30 H 0.268 0.732 31 H 0.244 0.756 32 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.449 -6.441 3.991 7.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.040 3.960 3 H 0.134 0.866 4 C 0.294 3.706 5 O -0.465 6.465 6 N -0.325 5.325 7 C -0.054 4.054 8 C 0.124 3.876 9 C -0.579 4.579 10 H 0.086 0.914 11 C -0.177 4.177 12 N -0.560 5.560 13 Si 0.781 3.219 14 H -0.184 1.184 15 H -0.206 1.206 16 H -0.211 1.211 17 N -0.159 5.159 18 C -0.023 4.023 19 N -0.298 5.298 20 C -0.106 4.106 21 N -0.189 5.189 22 H 0.113 0.887 23 H 0.105 0.895 24 H 0.109 0.891 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.041 0.959 29 H 0.046 0.954 30 H 0.077 0.923 31 H 0.260 0.740 32 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -1.889 -6.505 3.988 7.861 hybrid contribution -0.594 0.770 -0.606 1.146 sum -2.483 -5.735 3.382 7.106 Atomic orbital electron populations 1.22108 0.87665 1.04650 1.06109 1.21309 0.98594 0.96917 0.79190 0.86602 1.20646 0.77589 0.87052 0.85333 1.90613 1.56501 1.14967 1.84423 1.48151 1.63671 1.09147 1.11524 1.21673 1.00611 0.97460 0.85692 1.19299 0.97494 0.73455 0.97367 1.21638 0.95032 0.92064 1.49174 0.91358 1.25659 1.00874 0.96683 0.94498 1.70029 1.34553 1.02188 1.49233 0.85537 0.80057 0.78625 0.77722 1.18411 1.20559 1.21059 1.50328 1.18760 1.25031 1.21799 1.26530 0.99667 0.87190 0.88863 1.70603 1.07869 1.29584 1.21732 1.26697 0.97699 0.89126 0.97103 1.78035 1.04581 1.26820 1.09448 0.88676 0.89466 0.89118 0.92012 0.91381 0.90164 0.95878 0.95389 0.92329 0.73993 0.73364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.26 8.95 71.98 0.64 -3.62 16 2 C 0.15 5.26 3.18 44.24 0.14 5.40 16 3 H 0.12 4.70 5.73 -2.39 -0.01 4.69 16 4 C 0.51 20.36 6.76 87.65 0.59 20.95 16 5 O -0.58 -25.20 16.03 -3.04 -0.05 -25.25 16 6 N -0.60 -23.99 2.87 -851.14 -2.44 -26.43 16 7 C 0.09 3.00 10.54 127.77 1.35 4.35 16 8 C 0.24 11.02 4.90 85.63 0.42 11.44 16 9 C -0.54 -25.28 8.18 25.60 0.21 -25.07 16 10 H 0.07 3.12 6.99 -2.91 -0.02 3.10 16 11 C 0.02 1.15 5.46 84.65 0.46 1.61 16 12 N -0.92 -48.37 13.29 21.45 0.28 -48.08 16 13 Si 0.96 38.47 29.54 68.60 2.03 40.49 16 14 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 15 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 16 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 17 N -0.37 -12.98 3.35 -335.02 -1.12 -14.10 16 18 C 0.27 8.33 11.47 180.36 2.07 10.40 16 19 N -0.57 -17.96 11.19 -203.99 -2.28 -20.24 16 20 C 0.20 5.95 13.03 180.76 2.36 8.30 16 21 N -0.36 -13.22 12.70 -61.24 -0.78 -13.99 16 22 H 0.09 3.06 6.17 -2.39 -0.01 3.04 16 23 H 0.09 2.07 6.92 -2.39 -0.02 2.06 16 24 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 26 H 0.07 2.29 7.28 -2.39 -0.02 2.27 16 27 H 0.08 2.48 7.91 -2.39 -0.02 2.46 16 28 H 0.02 1.13 6.09 -2.39 -0.01 1.11 16 29 H 0.03 1.34 7.87 -2.39 -0.02 1.32 16 30 H 0.27 13.39 8.31 -92.71 -0.77 12.62 16 31 H 0.24 5.43 7.16 -2.91 -0.02 5.41 16 32 H 0.25 5.12 8.06 -2.91 -0.02 5.10 16 Total: -1.00 -61.99 277.53 5.01 -56.98 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 1.13 Total: 16.87 kcal Atomic # 6 Polarization: 25.53 SS G_CDS: 8.24 Total: 33.77 kcal Atomic # 7 Polarization: -116.51 SS G_CDS: -6.34 Total: -122.85 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.05 Total: -25.25 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.49 kcal Total: -61.99 5.01 -56.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071861512.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.102 kcal (2) G-P(sol) polarization free energy of solvation -61.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds